Alignment Contig 13683

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF018D07+ TTAAGCTATCATTCCTCAATGTTCAACGTACTCGAATCCCCACCCAATAATTGAAAAGAA
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consensus TTAAGCTATCATTCCTCAATGTTCAACGTACTCGAATCCCCACCCAATAATTGAAAAGAA

. : . : . : . : . : . :
rJMFF018D07+ AGAATAAAATCTATTCCCAAATAATGTAATGAATATCACATATCATTCAAGTTTCAAAAA
rJMSF032G07+ AAAA
rJMFF008L01+ AAAA
rJMFF008C10+ AAAA
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consensus AGAATAAAATCTATTCCCAAATAATGTAATGAATATCACATATCATTCAAGTTTCAAAAA

. : . : . : . : . : . :
rJMFF018D07+ TATCAATAAAAAATAACAACATTTCAAACTGAAGCTAATAACAGAGCCTAATACGTGTTG
rJMSF032G07+ TATCAATAAAAAATAACAACATTTCAAACTGAAGCTAATAACAGAGCCTAATACGTGTTG
rJMFF008L01+ TATCAATAAAAAATAACAACATTTCAAACTGAAGCTAATAACAGAGCCTAATACGTGTTG
rJMFF008C10+ TATCAATAAAAAATAACAACATTTCAAACTGAAGCTAATAACAGAGCCTAATACGTGTTG
rJMFF039C07+ AACTGAAGCTAATAACAGAGCCTAATACGTGTTG
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consensus TATCAATAAAAAATAACAACATTTCAAACTGAAGCTAATAACAGAGCCTAATACGTGTTG

. : . : . : . : . : . :
rJMFF018D07+ TTTATCTTTACAGTTTTCAACCCTCCCCTGAGAATTGGGTAGGGCAGGAAATACAAACAC
rJMSF032G07+ TTTATCTTTACAGTTTTCAACCCTCCCCTGAGAATTGGGTAGGGCAGGAAATACAAACAC
rJMFF008L01+ TTTATCTTTACAGTTTTCAACCCTCCCCTGAGAATTGGGTAGGGCAGGAAATACAAACAC
rJMFF008C10+ TTTATCTTTACAGTTTTCAACCCTCCCCTGAGAATTGGGTAGGGCAGGAAATACAAACAC
rJMFF039C07+ TTTATCTTTACAGTTTTCAACCCTCCCCTGAGAATTGGGTAGGGCAGGAAATACAAACAC
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consensus TTTATCTTTACAGTTTTCAACCCTCCCCTGAGAATTGGGTAGGGCAGGAAATACAAACAC

. : . : . : . : . : . :
rJMFF018D07+ AGATCCAGCTTCAAAGAAGTTGCCAGTCCATCTTCTTGTTTACCGTTCTCCGAATCACCA
rJMSF032G07+ AGATCCAGCTTCAAAGAAGTTGCCAGTC-ATCTTCTTGTTTACCGTTCTCCGAATCACCA
rJMFF008L01+ AGATCCAGCTTCAAAGAAGTTGCCAGTC-ATCTTCTTGTTTACCGTTCTCCGAATCACCA
rJMFF008C10+ AGATCCAGCTTCAAAGAAGTTGCCAGTC-ATCTTCTTGTTTACCGTTCTCCGAATCACCA
rJMFF039C07+ AGATCCAGCTTCAAAGAAGTTGCCAGTC-ATCTTCTTGTTTACCGTTCTCCGAATCACCA
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consensus AGATCCAGCTTCAAAGAAGTTGCCAGTC-ATCTTCTTGTTTACCGTTCTCCGAATCACCA

. : . : . : . : . : . :
rJMFF018D07+ ATGGAGGTTGCATCGAATGACTTGAATCCTTCTGCACTCGCCTCGCCCTGCATATCTTGA
rJMSF032G07+ ATGGAGGTTGCATCGAATGACTTGAATCCTTCTGCACTCGCCTCGCCCTGCATATCTTGA
rJMFF008L01+ ATGGAGGTTGCATCGAATGACTTGAATCCTTCTGCACTCGCCTCGCCCTGCATATCTTGA
rJMFF008C10+ ATGGAGGTTGCATCGAATGACTTGAATCCTTCTGCACTCGCCTCGCCCTGCATATCTTGA
rJMFF039C07+ ATGGAGGTTGCATCGAATGACTTGAATCCTTCTGCACTCGCCTCGCCCTGCATATCTTGA
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consensus ATGGAGGTTGCATCGAATGACTTGAATCCTTCTGCACTCGCCTCGCCCTGCATATCTTGA

. : . : . : . : . : . :
rJMFF018D07+ TATTGGACTGGCATGGAGACATTCCGAGTCTCGGTTATGGTGAACAGTGGAGCACCACCT
rJMSF032G07+ TATTGGACTGGCATGGAGACATTCCGAGTCTCGGTTATGGTGAACAGTGGAGCACCACCT
rJMFF008L01+ TATTGGACTGGCATGGAGACATTCCGAGTCTCGGTTATGGTGAACAGTGGAGCACCACCT
rJMFF008C10+ TATTGGACTGGCATGGAGACATTCCGAGTCTCGGTTATGGTGAACAGTGGAGCACCACCT
rJMFF039C07+ TATTGGACTGGCATGGAGACATTCCGAGTCTCGGTTATGGTGAACAGTGGAGCACCACCT
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consensus TATTGGACTGGCATGGAGACATTCCGAGTCTCGGTTATGGTGAACAGTGGAGCACCACCT

. : . : . : . : . : . :
rJMFF018D07+ GATTGATCAACCAGCTCCGATGCTCGTGCACAAAAATCATCAAAATCGCTCTTGTCTTTG
rJMSF032G07+ GATTGATCAACCAGCTCCGATGCTCGTGCACAAAAATCATCAAAATCGCTCTTGTCTTTG
rJMFF008L01+ GATTGATCAACCAGCTCCGATGCTCGTGCACAAAAATCATCAAAATCGCTCTTGTCTTTG
rJMFF008C10+ GATTGATCAACCAGCTCCGATGCTCGTGCACAAAAATCATCAAAATCGCTCTTGTCTTTG
rJMFF039C07+ GATTGATCAACCAGCTCCGATGCTCGTGCACAAAAATCATCAAAATCGCTCTTGTCTTTG
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consensus GATTGATCAACCAGCTCCGATGCTCGTGCACAAAAATCATCAAAATCGCTCTTGTCTTTG

. : . : . : . : . : . :
rJMFF018D07+ CAGTAAAACCCGATAGCCAA
rJMSF032G07+ CAGTAAAACCCGATAGCCAAGGATGGATCAATGGAATCAAGTGGGAGCTGCCGCACAACA
rJMFF008L01+ CAGTAAAACCCGATAGCCAAGGATGGATCAATGGAATCAAGTGGGAGCTGCCGCACAACA
rJMFF008C10+ CAGTAAAACCCGATAGCCAAGGATGGATCAATGGAATCAAGTGGGAGCTGCCGCACAACA
rJMFF039C07+ CAGTAAAACCCGATAGCCAAGGATGGATCAATGGAATCAAGTGGGAGCTGCCGCACAACA
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consensus CAGTAAAACCCGATAGCCAAGGATGGATCAATGGAATCAAGTGGGAGCTGCCGCACAACA

. : . : . : . : . : . :
rJMSF032G07+ TCGCAGTGGTAGGATGAAGTGTCGATATCTAAATTATCCCTCCCAAGATCAACAACTTGT
rJMFF008L01+ TCGCAGTGGTAGGATGAAGTGTCGATATCTAAATTATCCCTCCCAAGATCAACAACTTGT
rJMFF008C10+ TCGCAGTGGTAGGATGAAGTGTCGATATCTAAATTATCCCTCCCAAGATCAACAACTTGT
rJMFF039C07+ TCGCAGTGGTAGGATGAAGTGTCGATATCTAAATTATCCCTCCCAAGATCAACAACTTGT
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consensus TCGCAGTGGTAGGATGAAGTGTCGATATCTAAATTATCCCTCCCAAGATCAACAACTTGT

. : . : . : . : . : . :
rJMSF032G07+ TGAACTTCATGTGGATCAAGATAAAATGCCTGATCATCCTGCACACCAACAATGTATGTT
rJMFF008L01+ TGAACTTCATGTGGATCAAGATAAAATGCCTGATCATCCTGCACACCAACAATGTATGTT
rJMFF008C10+ TGAACTTCATGTGGATCAAGATAAAATGCCTGATCATCCTGCACACCAACAATGTATGTT
rJMFF039C07+ TGAACTTCATGTGGATCAAGATAAAATGCCTGATCATCCTGCACACCAACAATGTATGTT
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consensus TGAACTTCATGTGGATCAAGATAAAATGCCTGATCATCCTGCACACCAACAATGTATGTT

. : . : . : . : . : . :
rJMSF032G07+ GAGACTCCAGGTCTACCACCAAGGATTCCCAGGCTTTGGGGGAAGCTGAATGTAGCTTTT
rJMFF008L01+ GAGACTCCAGGTCTACCACCAAGGATTCCCAGGCTTTGGGGGAAGCTGAATGTAGCTTTT
rJMFF008C10+ GAGACTCCAGGTCTACCACCAAGGATTCCCAGGCTTTGGGGGAAGCTGAATGTAGCTTTT
rJMFF039C07+ GAGACTCCAGGTCTACCACCAAGGATTCCCAGGCTTTGGGGGAAGCTGAATGTAGCTTTT
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consensus GAGACTCCAGGTCTACCACCAAGGATTCCCAGGCTTTGGGGGAAGCTGAATGTAGCTTTT

. : . : . : . : . : . :
rJMSF032G07+ AACAAGGGAATATACCTTGGGTTAACCTTGTCGAGTCCTAAGACCAAGGGAACCAACAAA
rJMFF008L01+ AACAAGGGAATATACCTTGGGTTAACCTTGTCGAGTCCTAAGACCA
rJMFF008C10+ AACAAGGGAATATACCTTGGGTTAACCTTGTCGAGTCCTAAGACCAAGGGAACCAACAAA
rJMFF039C07+ AACAAGGGAATATACCTTGGGTTAACCTTGTCGAGTCCTAAGACCAAGGGAACCAACAAA
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consensus AACAAGGGAATATACCTTGGGTTAACCTTGTCGAGTCCTAAGACCAAGGGAACCAACAAA

. : . : . : . : . : . :
rJMSF032G07+ ATTATAGGAGCCCAACCAACTTGGCCTTTTGACAACTCGAGGCATCGCCTTGAGATATCA
rJMFF008C10+ ATTATAGGAGCCCAATCAACTTGGCCTTTTGACAACTCGAGGCATCGCCTTGAGATATCA
rJMFF039C07+ ATTATAGGAGCCCAATCAACTTGGCCTTTTGACAACTCGAG
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consensus ATTATAGGAGCCCAATCAACTTGGCCTTTTGACAACTCGAGGCATCGCCTTGAGATATCA

. : . : . : . : . : . :
rJMSF032G07+ TCAATGC
rJMFF008C10+ TCAATGCAAAGGGCTGGTGCACCGCCCCTTTCTCCATCTTCATCCCCAG
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consensus TCAATGCAAAGGGCTGGTGCACCGCCCCTTTCTCCATCTTCATCCCCAG