Alignment Contig 13668

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF014O14+ TTATTTCTTTTTGTAACATTCAAGCGTGGGGGTACTAGTTAGAAAATATCACAGAGTTAC
rJMSF009L10+ AGCGTGGGGGTACTAGTTAGAAAATATCACAGAGTTAC
rJMSF009E09+ AGCGTGGGGGTACTAGTTAGAAAATATCACAGAGTTAC
rJMSF027F19+ AGCGTGGGGGTACTAGTTAGAAAATATCACAGAGTTAC
____________________________________________________________
consensus TTATTTCTTTTTGTAACATTCAAGCGTGGGGGTACTAGTTAGAAAATATCACAGAGTTAC

. : . : . : . : . : . :
rJMFF014O14+ AATATAACAAGG-TAATGGAAATACCTATCACTTATTTCCAAGTCATTTACAAAGAGATA
rJMSF009L10+ AATATAACAAGGGTAATGGAAATACCTATCACTTATTTCCAAGTCATTTACAAAGAGATA
rJMSF009E09+ AATATAACAAGG-TAATGGAAATACCTATCACTTATTTCCAAGTCATTTACAAAGAGATA
rJMSF027F19+ AATATAACAAGG-TAATGGAAATACCTATCACTTATTTCCAAGTCATTTACAAAGAGATA
____________________________________________________________
consensus AATATAACAAGG-TAATGGAAATACCTATCACTTATTTCCAAGTCATTTACAAAGAGATA

. : . : . : . : . : . :
rJMFF014O14+ TTTCTTACGTTGGTCCCTCGTAAGGACAGACGAAAATCTTCACTCAAGAACCTGAGTTGG
rJMSF009L10+ TTTCTTACGTTGGTCCCTCGTAAGGACAGACGAAAATCTTCACTCAAGAACCTGAGTTGG
rJMSF009E09+ TTTCTTACGTTGGTCCCTCGTAAGGACAGACGAAAATCTTCACTCAAGAACCTGAGTTGG
rJMSF027F19+ TTTCTTACGTTGGTCCCTCGTAAGGACAGACGAAAATCTTCACTCAAGAACCTGAGTTGG
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consensus TTTCTTACGTTGGTCCCTCGTAAGGACAGACGAAAATCTTCACTCAAGAACCTGAGTTGG

. : . : . : . : . : . :
rJMFF014O14+ TCTCTTTCTTGCCAAGCTGACTGTTAAGGAACTCGAGCACCGACAATCTCCGCTGTTCAA
rJMSF009L10+ TCTCTTTCTTGCCAAGCTGACTGTTAAGGAACTCGAGCACCGACAATCTCCGCTGTTCAA
rJMSF009E09+ TCTCTTTCTTGCCAAGCTGACTGTTAAGGAACTCGAGCACCGACAATCTCCGCTGTTCAA
rJMSF027F19+ TCTCTTTCTTGCCAAGCTGACTGTTAAGGAACTCGAGCACCGACAATCTCCGCTGTTCAA
____________________________________________________________
consensus TCTCTTTCTTGCCAAGCTGACTGTTAAGGAACTCGAGCACCGACAATCTCCGCTGTTCAA

. : . : . : . : . : . :
rJMFF014O14+ GGCCAACTTCTTCAGGATTTAGTTTCAGACATTGCAGCATTTCTATGGCTTCTTGAAATC
rJMSF009L10+ GGCCAACTTCTTCAGGATTTAGTTTCAGACATTGCAGCATTTCTATGGCTTCTTGAAATC
rJMSF009E09+ GGCCAACTTCTTCAGGATTTAGTTTCAGACATTGCAGCATTTCTATGGCTTCTTGAAATC
rJMSF027F19+ GGCCAACTTCTTCAGGATTTAGTTTCAGACATTGCAGCATTTCTATGGCTTCTTGAAATC
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consensus GGCCAACTTCTTCAGGATTTAGTTTCAGACATTGCAGCATTTCTATGGCTTCTTGAAATC

. : . : . : . : . : . :
rJMFF014O14+ CATCTACTGCAGTTTTCTCATTCCCAATATTTCTGTCCACATCAGCTACTTTTGCAAGTG
rJMSF009L10+ CATCTACTGCAGTTTTCTCATTCCCAATATTTCTGTCCACATCAGCTACTTTTGCAAGTG
rJMSF009E09+ CATCTACTGCAGTTTTCTCATTCCCAATATTTCTGTCCACATCAGCTACTTTTGCAAGTG
rJMSF027F19+ CATCTACTGCAGTTTTCTCATTCCCAATATTTCTGTCCACATCAGCTACTTTTGCAAGTG
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consensus CATCTACTGCAGTTTTCTCATTCCCAATATTTCTGTCCACATCAGCTACTTTTGCAAGTG

. : . : . : . : . : . :
rJMFF014O14+ ATACGGCCACATCTATGGTCTGAGATGGTTGAGAATGCTGCTTGATGGCATTGCGGCGAA
rJMSF009L10+ ATACGGCCACATCTATGGTCTGAGATGGTTGAGAATGCTGCTTGATGGCATTGCGGCGAA
rJMSF009E09+ ATACGGCCACATCTATGGTCTGAGATGGTTGAGAATGCTGCTTGATGGCATTGCGGCGAA
rJMSF027F19+ ATACGGCCACATCTATGGTCTGAGATGGTTGAGAATGCTGCTTGATGGCATTGCGGCGAA
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consensus ATACGGCCACATCTATGGTCTGAGATGGTTGAGAATGCTGCTTGATGGCATTGCGGCGAA

. : . : . : . : . : . :
rJMFF014O14+ TATCCAATGCTTGAAAATAATATGATCTTGCAGCTTGCAAATCTTCATCATAGTATTTAA
rJMSF009L10+ TATCCAATGCTTGAAAATAATATGATCTTGCAGCTTGCAAATCTTCATCATAGTATTTAA
rJMSF009E09+ TATCCAATGCTTGAAAATAATATGATCTTGCAGCTTGCAAATCTTCATCATAGTATTTAA
rJMSF027F19+ TATCCAATGCTTGAAAATAATATGATCTTGCAGCTTGCAAATCTTCATCATAGTATTTAA
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consensus TATCCAATGCTTGAAAATAATATGATCTTGCAGCTTGCAAATCTTCATCATAGTATTTAA

. : . : . : . : . : . :
rJMFF014O14+ GGTCTCCAATTTTATTTAGAGAGACAGAAAGAGTGTGTGTTATCTCTAAATCATCTTTAG
rJMSF009L10+ GGTCTCCAATTTTATTTAGAGAGACAGAAAGAGTGTGTGTTATCTCTAAATCATCTTTAG
rJMSF009E09+ GGTCTCCAATTTTATTTAGAGAGACAGAAAGAGTGTGTGTTATCTCTAAATCATCTTTAG
rJMSF027F19+ GGTCTCCAATTTTATTTAGAGAGACAGAAAGAGTGTGTGTTATCTCTAAATCATCTTTAG
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consensus GGTCTCCAATTTTATTTAGAGAGACAGAAAGAGTGTGTGTTATCTCTAAATCATCTTTAG

. : . : . : . : . : . :
rJMFF014O14+ GCACTTTTAAAAGAAAATTGACACTCTCTTCAAAATATTTGACTGCAGAAGCGGCATCTC
rJMSF009L10+ GCACTTTTAAAAGAAAATTGACACTCTCTTCAAAATATTTGACTGCAGAAGCGGCATCTC
rJMSF009E09+ GCACTTTTAAAAGAAAATTGACACTCTCTTCAAAATATTTGACTGCAGAAGCGGCATCTC
rJMSF027F19+ GCACTTTTAAAAGAAAATTGACACTCTCTTCAAAATATTTGACTGCAGAAGCGGCATCTC
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consensus GCACTTTTAAAAGAAAATTGACACTCTCTTCAAAATATTTGACTGCAGAAGCGGCATCTC

. : . : . : . : . : . :
rJMFF014O14+ CTGTAGCTCGGCAGCAATCACCAAGCATACCCAGAACTGCTCCAAGTTGTGAGCACAGTT
rJMSF009L10+ CTGTAGCTCGGCAGCAATCACCAAGCATACCCAGAACTGCTCCAAGTTGTGAGCACAGTT
rJMSF009E09+ CTGTAGCTCGGCAGCAATCACCAAGCATACCCAGAACTGCTCCAAGTTGTGAGCACAGTT
rJMSF027F19+ CTGTAGCTCGGCAGCAATCACCAAGCATACCCAGAACTGCTCCAAGTTGTGAGCACAGTT
____________________________________________________________
consensus CTGTAGCTCGGCAGCAATCACCAAGCATACCCAGAACTGCTCCAAGTTGTGAGCACAGTT

. : . : . : . : . : . :
rJMFF014O14+ CTGATGTATTTCCCATTCTTTCTACTTGTTCTCGAATATCTTCTGCACATATGCTAAGTC
rJMSF009L10+ CTGATGTATTTCCCATTCTTTCTACTTGTTCTCGAATATCTTCTGCACATATGCTAAGTC
rJMSF009E09+ CTGATGTATTTCCCATTCTTTCTACTTGTTCTCGAATATCTTCTGCACATATGCTAAGTC
rJMSF027F19+ CTGATGTATTTCCCATTCTTTCTACTTGTTCTCGAATATCTTCTGCACATATGCTAAGTC
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consensus CTGATGTATTTCCCATTCTTTCTACTTGTTCTCGAATATCTTCTGCACATATGCTAAGTC

. : . : . : . : . : . :
rJMFF014O14+ TTGATTTTGCACTTTCAACATTATTTGCACGAAATGCTCGCATGGCATGATGCA
rJMSF009L10+ TTGATTTTGCACTTTCAACATTATTTGCACGAA-TGCTCGCATGGCATGATGCA
rJMSF009E09+ TTGATTTTGCACTTTCAACATTATTTGCACGAAATGCTCGCATGGCATGATGCACCAGGA
rJMSF027F19+ TTGATTTTGCACTTTCACCATTATTTGCACGAAATGCTCGCATGGCATGATGCA
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consensus TTGATTTTGCACTTTCAACATTATTTGCACGAAATGCTCGCATGGCATGATGCACCAGGA

. : . : . : . : . : . :
rJMSF009E09+ AGAGCCTCNTTCCAAGACACATCCTCATATAT
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consensus AGAGCCTCNTTCCAAGACACATCCTCATATAT