Alignment Contig 13662

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF014A10+ TCCATACAGGAGAGGCTAAAACTTTGATATGTTATGTAAGAATGAACAATGTAATACTGG
rJMSF044N06+ GATATGTTATGTAAGAATGAACAATGTAATACTGG
rJMSF029F09+ G
rJMSF016A22+ G
____________________________________________________________
consensus TCCATACAGGAGAGGCTAAAACTTTGATATGTTATGTAAGAATGAACAATGTAATACTGG

. : . : . : . : . : . :
rJMFF014A10+ GGGGGGGGG-TATTGTTTTACCTCATTGATCACTATTCNCTAATATGCCTAAAANCCAAA
rJMSF044N06+ GGGGGGGGGGTATTGTTTTNCCNCATTGATCNCTATTCNCTAATATGCCTAAAAGCCAAA
rJMSF029F09+ GGGGGGGGGGTATTGTTTTACCTCATTGATCACTATTCACTAATANGCCTAAAAGCCAAA
rJMSF016A22+ GGGGGGGGGGTATNGTTTTACCNCATTGATCACTATTCACTAATANGCCTAAAAGCCAAA
____________________________________________________________
consensus GGGGGGGGGGTATTGTTTTACCTCATTGATCACTATTCACTAATATGCCTAAAAGCCAAA

. : . : . : . : . : . :
rJMFF014A10+ TCCANCANCCTTGTCNTTTGGCCTGCTTGGAAATCAAATAATGCAAACTCNACAAAATGC
rJMSF044N06+ TCCAGCANCCTTGTCNTTTGGCCGGCTNGGAAATCAAANAANGCAAACNCGACAAAANGC
rJMSF029F09+ TCCAGCAGCCTTGTCATTTGGCCNGCTTGGAAATCANATAANGCAAACTCGACAAAANGC
rJMSF016A22+ TCCNGCANCCTTGTCATTTGGCCNGCTNGGAAATCANATAANGCAAACNCGACAAAANGC
____________________________________________________________
consensus TCCAGCAGCCTTGTCATTTGGCCGGCTTGGAAATCAAATAATGCAAACTCGACAAAATGC

. : . : . : . : . : . :
rJMFF014A10+ AATTGTAAATGTAACNAAATGAAACNATAAATCTTAATGTCGTTCCTCAATTAAAAACCT
rJMSF044N06+ AATTGTAAANGTAACGAAATGAAACGATANATCTTAANGNCGTNCCNCAATTAAAAACCN
rJMSF029F09+ AATTGTAAANGTAACGAAATGAAACGATAGATCTTAANGTCGTTCCNCAATTAAAAACCN
rJMSF016A22+ AATTGTAAANGTAACGAAANGAAACGATANATCTTAANGNCGTTCCNCAATTAAAA-CCN
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consensus AATTGTAAATGTAACGAAATGAAACGATAAATCTTAATGTCGTTCCTCAATTAAAAACCT

. : . : . : . : . : . :
rJMFF014A10+ CGNAAAATTTCTCNATGACAAGTACCCCCNAGTCNATGGACTCCAATGGATCTTTACGGA
rJMSF044N06+ CGNAAAATTTCNCGATGACAAGTANCCCCNAGNCNATGGACNCCAANGGATCTTTACGGA
rJMSF029F09+ CGTAAAATTTCTCGATGACAAGTANCCCCGAGTCGATGGACTCCAANGGATCTTTACGGA
rJMSF016A22+ CGNAAAATTTCNCGATGACAAGTANCCCCNAGNCNANGGACNCCAAGGGATCTTTACGGA
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consensus CGTAAAATTTCTCGATGACAAGTACCCCCGAGTCGATGGACTCCAAGGGATCTTTACGGA

. : . : . : . : . : . :
rJMFF014A10+ GTCTGNGTCTCAANCAGTTAGGGATTACCGTTGCNATATCCTCANCAGTTACTTCGTTTC
rJMSF044N06+ GNCNGNGTCNCAAGCANTTAGGGATTACCGTTGCNATANCCNCANCAGTTACTTCGTTTC
rJMSF029F09+ GTCTGNGTCTCAAGCAGTTAGGGATTACCGTTGCGATATCCTCAGCAGTTACTTCGTTTC
rJMSF016A22+ GTCNGNGTCNCAAGCAGTTAGGGATTACCGTTGCNANATCCNCAGCAGTTACTTCGTTTC
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consensus GTCTGNGTCTCAAGCAGTTAGGGATTACCGTTGCGATATCCTCAGCAGTTACTTCGTTTC

. : . : . : . : . : . :
rJMFF014A10+ TTCCTTTCANCNAANCCAATGCTCTTGCANCCCGGTTCGTGACTATATCNCCCCTCAACC
rJMSF044N06+ TTCCTTTCANCNAANCCAANGCNCTTGCANCCCGGTTCGNGACTATNTCNCCCCTCAACC
rJMSF029F09+ TTCCTTTCAGCGAAGCCAANGCTCTTGCAGCCCGGTTCGNGACTATNTCGCCCCTCAACC
rJMSF016A22+ TTCCTTTCAGCGAANCCAANGCTCTTGCANCCCGGTTCGNGACTATNTCNCCCCTCAACC
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consensus TTCCTTTCAGCGAAGCCAATGCTCTTGCAGCCCGGTTCGTGACTATATCGCCCCTCAACC

. : . : . : . : . : . :
rJMFF014A10+ CGTCAACGTTCAATTCAGCGCAAACCTTAAAAATTTTGACACGGAAATCATGGNCAATCG
rJMSF044N06+ CGTCAACGTTCANTTCANCGCAAACCTTAAANATTTTGACNCGGAAATCANGGNCAANCG
rJMSF029F09+ CGTCAACGTTCAATTCAGCGCAAACCTTAAANATTTTGACACGGANATCANGGTCAATCG
rJMSF016A22+ CGTCAACGTTCAATTCAGCGCAAACCTTAAANATTTTGACNCGGAAATCANGGTCAATCG
____________________________________________________________
consensus CGTCAACGTTCAATTCAGCGCAAACCTTAAAAATTTTGACACGGAAATCATGGTCAATCG

. : . : . : . : . : . :
rJMFF014A10+ NAACGGAAAAAAGGGAGTTCCTANCCNAGGCNATTTGGNCCTGGANCTTCTCTTGCTCGG
rJMSF044N06+ TAACGNAAAAAAGGGAGTTCCTANCCAAGGCNATTTGGNCCNGGAGCTTCNCTTGCNCGG
rJMSF029F09+ TAACGGAANAAAGGGAGTTCCTAGCCNAGGCGATTTGGNCCNGGAGCTTCNCTTGCTCGG
rJMSF016A22+ NAACGGAANAAAGGGAGTTCCTANCCNAGGCNATTTGGNCCNGGAGCTTCNCTTGCTCGG
____________________________________________________________
consensus TAACGGAAAAAAGGGAGTTCCTAGCCAAGGCGATTTGGNCCTGGAGCTTCTCTTGCTCGG

. : . : . : . : . : . :
rJMFF014A10+ CCTTGNAAAATTCCCGGAATTCCTTGGNATTCCTATCGAACCNAGCTC
rJMSF044N06+ CCTTGTAAAATTCCCGGAATTCCTNGGGATTCCTAT
rJMSF029F09+ CCTTGTAANATTCCCGGAATTCCTTGGGATTCCTATCGAACCGAGCTCTCNCCTCGACNA
rJMSF016A22+ CCTTGTAAAATTCCCGGAATTCCTNGGGATTCCTATCNAACCNAGCTCTCNCCNCNACNA
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consensus CCTTGTAAAATTCCCGGAATTCCTTGGGATTCCTATCGAACCGAGCTCTCNCCTCGACNA

. : . : . : . : . : . :
rJMSF029F09+ TCTTTACTCGCAGTTCTGCATCCCGAACCGTTCCCACTTGNGCATGCATTCCAAACCTAT
rJMSF016A22+ TCTTTACNCNCAGTTCTGCATCCCNAACCGTTCCCACTTGGGCANGCATTCCAAACCTAT
____________________________________________________________
consensus TCTTTACTCGCAGTTCTGCATCCCGAACCGTTCCCACTTGGGCATGCATTCCAAACCTAT

. : . : . : . : . : . :
rJMSF029F09+ CGAGAAGCTGCGGCCTAAGCTCCCCTTCCTCGGGGTTTCCAGAGCCAATAAGGATAAACC
rJMSF016A22+ CGAGAAGCTGNGGCCTAAGCTCCCCTTCCTCGGGGTTTCCAGAGCCAATAA
____________________________________________________________
consensus CGAGAAGCTGCGGCCTAAGCTCCCCTTCCTCGGGGTTTCCAGAGCCAATAAGGATAAACC

. : . : . : . : . : . :
rJMSF029F09+ GAGCGGGAT
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consensus GAGCGGGAT