Alignment Contig 1365

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF024B20+ GTTAGACACCATACTGTGCTGGTTAAATATTCCACAAATTTAACAAACATGAAGGTAAAA
____________________________________________________________
consensus GTTAGACACCATACTGTGCTGGTTAAATATTCCACAAATTTAACAAACATGAAGGTAAAA

. : . : . : . : . : . :
rJMSF024B20+ TGTTACATTGTCATCCTTGCTACAAATAGGAGCTTAATCTTTTGATCATTTCATTCCACA
rJMSF034G20+ TGTTACATTGTCATCCTTGCTACAAATAGGAGCTTAATCTTTTGATCATTTCATTCCACA
rJMSF016D06+ TGTTACATTGTCATCCTTGCTACAAATAGGAGCTTAATCTTTTGATCATTTCATTCCACA
rJMSF033G20+ GTCATCCTTGCTACAAATAGGAGCTTAATCTTTTGATCATTTCATTCCACA
rJMSF027N15+ TGTTACATTGTCATCCTTGCTACAAATAGGAGCTTAATCTTTTGATCATTTCATTCCACA
____________________________________________________________
consensus TGTTACATTGTCATCCTTGCTACAAATAGGAGCTTAATCTTTTGATCATTTCATTCCACA

. : . : . : . : . : . :
rJMSF024B20+ TTTATACTTTCCCATTACAGCATGTATTTCCTTGGAGCATCTCCATTCTCTCCCCTTCGG
rJMSF034G20+ TTTATACTTTCCCATTACAGCATGTATTTCCTTGGAGCATCTCCATTCTCTCCCCTTCGG
rJMSF016D06+ TTTATACTTTCCCATTACAGCATGTATTTCCTTGGAGCATCTCCATTCTCTCCCCTTCGG
rJMSF033G20+ TTTATACTTTCCCATTACAGCATGTATTTCCTTGGAGCATCTCCATTCTCTCCCCTTCGG
rJMSF027N15+ TTTATACTTTCCCATTACAGCATGTATTTCCTTGGAGCATCTCCATTCTCTCCCCTTCGG
____________________________________________________________
consensus TTTATACTTTCCCATTACAGCATGTATTTCCTTGGAGCATCTCCATTCTCTCCCCTTCGG

. : . : . : . : . : . :
rJMSF024B20+ GTCGGTCTATCAATTTATTCGTCGCTCCACTTACCGTTTAGTAATTTACACGAAGCATGA
rJMSF034G20+ GTCGGTCTATCAATTTATTCGTCGCTCCACTTACCGTTTAGTAATTTACACGAAGCATGA
rJMSF016D06+ GTCGGTCTATCAATTTATTCGTCGCTCCACTTACCGTTTAGTAATTTACACGAAGCATGA
rJMSF033G20+ GTCGGTCTATCAATTTATTCGTCGCTCCACTTACCGTTTAGTAATTTACACGAAGCATGA
rJMSF027N15+ GTCGGTCTATCAATTTATTCGTCGCTCCACTTACCGTTTAGTAATTTACACGAAGCATGA
____________________________________________________________
consensus GTCGGTCTATCAATTTATTCGTCGCTCCACTTACCGTTTAGTAATTTACACGAAGCATGA

. : . : . : . : . : . :
rJMSF024B20+ TGTAAAATACAGCTTGGGTACAAACTAATCCCGCAAATAGAGACAACCTTTCACATTGAC
rJMSF034G20+ TGTAAAATACAGCTTGGGTACAAACTAATCCCGCAAATAGAGACAACCTTTCACATTGAC
rJMSF016D06+ TGTAAAATACAGCTTGGGTACAAACTAATCCCGCAAATAGAGACAACCTTTCACATTGAC
rJMSF033G20+ TGTAAAATACAGCTTGGGTACAAACTAATCCCGCAAATAGAGACAACCTTTCACATTGAC
rJMSF027N15+ TGTAAAATACAGCTTGGGTACAAACTAATCCCGCAAATAGAGACAACCTTTCACATTGAC
____________________________________________________________
consensus TGTAAAATACAGCTTGGGTACAAACTAATCCCGCAAATAGAGACAACCTTTCACATTGAC

. : . : . : . : . : . :
rJMSF024B20+ CTCAAGGAGACATAACAAAGATGGCACAGCCAGTCTCCCTAATCGGAGAGCAGACTCTCT
rJMSF034G20+ CTCAAGGAGACATAACAAAGATGGCACAGCCAGTCTCCCTAATCGGAGAGCAGACTCTCT
rJMSF016D06+ CTCAAGGAGACATAACAAAGATGGCACAGCCAGTCTCCCTAATCGGAGAGCAGACTCTCT
rJMSF033G20+ CTCAAGGAGACATAACAAAGATGGCACAGCCAGTCTCCCTAATCGGAGAGCAGACTCTCT
rJMSF027N15+ CTCAAGGAGACATAACAAAGATGGCACAGCCAGTCTCCCTAATCGGAGAGCAGACTCTCT
____________________________________________________________
consensus CTCAAGGAGACATAACAAAGATGGCACAGCCAGTCTCCCTAATCGGAGAGCAGACTCTCT

. : . : . : . : . : . :
rJMSF024B20+ CCCACAGCTTCAGGTCTTTGCGTTAGGGGAAGTCAAAATATTGATAGGACCTTTTCCAAG
rJMSF034G20+ CCCACAGCTTCAGGTCTTTGCGTTAGGGGAAGTCAAAATATTGATAGGACCTTTTCCAAG
rJMSF016D06+ CCCACAGCTTCAGGTCTTTGCGTTAGGGGAAGTCAAAATATTGATAGGACCTTTTCCAAG
rJMSF033G20+ CCCACAGCTTCAGGTCTTTGCGTTAGGGGAAGTCAAAATATTGATAGGACCTTTTCCAAG
rJMSF027N15+ CCCACAGCTTCAGGTCTTTGCGTTAGGGGAAGTCAAAATATTGATAGGACCTTTTCCAAG
____________________________________________________________
consensus CCCACAGCTTCAGGTCTTTGCGTTAGGGGAAGTCAAAATATTGATAGGACCTTTTCCAAG

. : . : . : . : . : . :
rJMSF024B20+ TGGTGTCGTCTTTGAATTCCCACCTTGTCCAACAGCGCTCTTTGTATTGGTCGTCTTTAC
rJMSF034G20+ TGGTGTCGTCTTTGAATTCCCACCTTGTCCAACAGCGCTCTTTGTATTGGTTGTCTTTAC
rJMSF016D06+ TGGTGTCGTCTTTGAATTCCCACCTTGTCCAACAGCGCTCTTTGTATTGGTTGTCTTTAC
rJMSF033G20+ TGGTGTCGTCTTTGAATTCCCACCTTGTCCAACAGCGCTCTTTGTATTGGTTGTCTTTAC
rJMSF027N15+ TGGTGTCGTCTTTGAATTCCCACCTTGTCCAACAGCGCTCTTTGTATTGGTTGTCTTTAC
____________________________________________________________
consensus TGGTGTCGTCTTTGAATTCCCACCTTGTCCAACAGCGCTCTTTGTATTGGTTGTCTTTAC

. : . : . : . : . : . :
rJMSF024B20+ AGCAACAGACGATCTCTTGATTGCAGCCAGCCGTTCTCTATGAATGTCACTTGTAAGAGG
rJMSF034G20+ AGCAACAGACGATCTCTTGATTGCAGCCAGCCGTTCTCTATGAATGTCACTTGTAAGAGG
rJMSF016D06+ AGCAACAGACGATCTCTTGATTGCAGCCAGCCGTTCTCTATGAATGTCACTTGTAAGAGG
rJMSF033G20+ AGCAACAGACGATCTCTTGATTGCAGCCAGCCGTTCTCTATGAATGTCACTTGTAAGAGG
rJMSF027N15+ AGCAACAGACGATCTCTTGATTGCAGCCAGCCGTTCTCTATGAATGTCACTTGTAAGAGG
____________________________________________________________
consensus AGCAACAGACGATCTCTTGATTGCAGCCAGCCGTTCTCTATGAATGTCACTTGTAAGAGG

. : . : . : . : . : . :
rJMSF024B20+ TTTCTTGTAGGTCCTAATCTCATCCCCACTAAATACAGGAAGAGTAATGTTCCAGTGCCT
rJMSF034G20+ TTTCTTGTAGGTCCTAATCTCATCCCCACTAAATACAGGAAGAGTAATGTTCCAGTGCCT
rJMSF016D06+ TTTCTTGTAGGTCCTAATCTCATCCCCACTAAATACAGGAAGAGTAATGTTCCAGTGCCT
rJMSF033G20+ TTTCTTGTAGGTCCTAATCTCATCCCCACTAAATACAGGAAGAGTAATGTTCCAGTGCCT
rJMSF027N15+ TTTCTTGTAGGTCCTAATCTCATCCCCACTAAATACAGGAAGAGTAATGTTCCAGTGCCT
____________________________________________________________
consensus TTTCTTGTAGGTCCTAATCTCATCCCCACTAAATACAGGAAGAGTAATGTTCCAGTGCCT

. : . : . : . : . : . :
rJMSF024B20+ TTCAGCATGTAGAAGGATGTCCTTTGCTTCCAGTGTTGAGGACTTACGATGTTTGGCCAA
rJMSF034G20+ TTCAGCATGTAGAAGGATGTCCTTTGCTTCCAGTGTTGAGGACTTACGATGTTTGGCCAA
rJMSF016D06+ TTCAGCATGTAGAAGGATGTCCTTTGCTTCCAGTGTTGAGGACTTACGATGTTTGGCCAA
rJMSF033G20+ TTCAGCATGTAGAAGGATGTCCTTTGCTTCCAGTGTTGAGGACTTACGATGTTTGGCCAA
rJMSF027N15+ TTCAGCATGTAGAAGGATGTCCTTTGCTTCCAGTGTTGAGGACTTACGATGTTTGGCCAA
____________________________________________________________
consensus TTCAGCATGTAGAAGGATGTCCTTTGCTTCCAGTGTTGAGGACTTACGATGTTTGGCCAA

. : . : . : . : . : . :
rJMSF024B20+ TGAGCAACCAAAGGTTGTAAGAGATTCCACAAATTCATCTGCAATATCCACAAGGATGTC
rJMSF034G20+ TGAGCAACCAAAGGTTGTAAGAGATTCCACAAATTCATCTGCAATATCCACAAGGATGTC
rJMSF016D06+ TGAGCAACCAAAGGTTGTAAGAGATTCCACAAATTCATCTGCAATATCCACAAGGATGTC
rJMSF033G20+ TGAGCAACCAAAGGTTGTAAGAGATTCCACAAATTCATCTGCAATATCCACAAGGATGTC
rJMSF027N15+ TGAGCAACCAAAGGTTGTAAGAGATTCCACAAATTCATCTGCAATATCCACAAGGATGTC
____________________________________________________________
consensus TGAGCAACCAAAGGTTGTAAGAGATTCCACAAATTCATCTGCAATATCCACAAGGATGTC

. : . : . : . : . : . :
rJMSF024B20+ TTCAACCTCAGCATCCAACTTCCCTGGTGGGTCAATCTGGGTA
rJMSF034G20+ TTCAACCTCAGCATCCAACTTCCCTG
rJMSF016D06+ TTCAACCTCAGCATCCAACTTCCCTGTTGGGTCAATCTGGGTAACTAGCTCCTGGATGCT
rJMSF033G20+ TTCAACCTCAGCATCCAACTTCCCTGTTGGGTCAATCTGGGTANCTAGCTCCNGGATGCT
rJMSF027N15+ TTCAACCTCAGCATCCAACTTCCCTGGTGGGTCAATCTGGGTAACTAGCTCCTGGATGCT
____________________________________________________________
consensus TTCAACCTCAGCATCCAACTTCCCTGGTGGGTCAATCTGGGTAACTAGCTCCTGGATGCT

. : . : . : . : . : . :
rJMSF016D06+ TCTCTTGCTCAGAATCCTATTACAAGGCTCCTCAGTCTCTGCAGCAGAAGTCTTATTAA
rJMSF033G20+ NCTCTTGCTC
rJMSF027N15+ NCTCTNGCTC
____________________________________________________________
consensus TCTCTTGCTCAGAATCCTATTACAAGGCTCCTCAGTCTCTGCAGCAGAAGTCTTATTAA