Alignment Contig 13605

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF004F15+ GATTTGATTCACAACAATAGTGTTCATGTCCACAATACACAAATCACACCAATACAAACC
rJMSF005K04+ ATACACAAATCACACCAATACAAACC
rJMFF012G02+ ACCAATACAAACC
rJMSF038N22+ ATACACAAATCACACCAATACAAACC
rJMSF015F08+ ATACACAAATCACACCANTACAAACC
____________________________________________________________
consensus GATTTGATTCACAACAATAGTGTTCATGTCCACAATACACAAATCACACCAATACAAACC

. : . : . : . : . : . :
rJMFF004F15+ TACAAGTTT-GCAAACTGCAATGGATGGGCACAAGAAAAGCTAATGGGATCAAGAATAAG
rJMSF005K04+ TACAAGTTTTGCAAACTGCAATGGATGGGCACAAGAAAAGCTAATGGGATCAAGAATAAG
rJMFF012G02+ TACAAGTTT-GCAAACTGCAATGGATGGGCACAAGAAAAGCTAATGGGATCAAGAATAAG
rJMSF038N22+ TACAAGTTT-GCAAACTGCAATGGATGGGCACAAGAAAAGCTAATGGGATCAAGAATAAG
rJMSF015F08+ TACNAGTTT-GCANACTGCANTGGATGGGCACAAGAAAAGCTAATGGGATCAAGAATAAG
____________________________________________________________
consensus TACAAGTTT-GCAAACTGCAATGGATGGGCACAAGAAAAGCTAATGGGATCAAGAATAAG

. : . : . : . : . : . :
rJMFF004F15+ CCTAAACTGATTCACATTTGATACATACCAATTCATTTCAACTAAAAAAGAGTAAAACTA
rJMSF005K04+ CCTAAACTGATTCACATTTGATACATACCAATTCATTTCAACTAAAAAAGAGTAAAACTA
rJMFF012G02+ CCTAAACTGATTCACATTTGATACATACCAATTCATTTCAACTAAAAAAGAGTAAAACTA
rJMSF038N22+ CCTAAACTGATTCACATTTGATACATACCAATTCATTTCAACTAAAAAAGAGTAAAACTA
rJMSF015F08+ CCTAAACTGATTCACATTTGATACATACCAATTCATTTCAACTAAAAAAGAGTAAAACTA
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consensus CCTAAACTGATTCACATTTGATACATACCAATTCATTTCAACTAAAAAAGAGTAAAACTA

. : . : . : . : . : . :
rJMFF004F15+ GAAGCAGACAATCTAAATTCATCCTGCAAAGCAAGAACCTTGAATCCACACCTGAGATTC
rJMSF005K04+ GAAGCAGACAATCTAAATTCATCCTGCANAGCAAGAACCTTGAATCCACACCTGAGATTC
rJMFF012G02+ GAAGCAGACAATCTAAATTCATCCTGCAAAGCAAGAACCTTGAATCCACACCTGAGATTC
rJMSF038N22+ GAAGCAGACAATCTAAATTCATCCTGCAAAGCAAGAACCTTGAATCCACACCTGAGATTC
rJMSF015F08+ GAAGCAGACNATCTAANTTCATCCTGCAAAGCAAGAACCTTGAATCCACACCTGAGATTC
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consensus GAAGCAGACAATCTAAATTCATCCTGCAAAGCAAGAACCTTGAATCCACACCTGAGATTC

. : . : . : . : . : . :
rJMFF004F15+ GGAGCCATAACTAGTATTTACTCAAGTAGAGGGAGAGGTCCAAACGATGTCCTTAAGCGC
rJMSF005K04+ GGAGCCATAACCAGTATTTACTCAAGTAGAGGGAGAGGTCCAAACGATGTCCTTAAGCGC
rJMFF012G02+ GGAGCCATAACTAGTATTTACTCAAGTAGAGGGAGAGGTCCAAACGATGTCCTTAAGCGC
rJMSF038N22+ GGAGCCATAACTAGTATTTACTCAAGTAGAGGGAGAGGTCCAAACGATGTCCTTAAGCGC
rJMSF015F08+ GGAGCCATAACTAGTATTTACTCAAGTAGAGGGAGAGGTCCAAACGATGTCCTTAAGCGC
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consensus GGAGCCATAACTAGTATTTACTCAAGTAGAGGGAGAGGTCCAAACGATGTCCTTAAGCGC

. : . : . : . : . : . :
rJMFF004F15+ TGGTCTAAGCTCTTTGCTGCAGAACTGATTGTATTCGAGAGTATCGCCACTAGCCTTCTT
rJMSF005K04+ TGGTCTAAGCTCTTTGCTGCAGAACTGATTGTATTCGAGAGTATCGCCACTAGCCTTCTT
rJMFF012G02+ TGGTCTAAGCTCTTTGCTGCAGAACTGATTGTATTCGAGAGTATCGCCACTAGCCTTCTT
rJMSF038N22+ TGGTCTAAGCTCTTTGCTGCAGAACTGATTGTATTCGAGAGTATCGCCACTAGCCTTCTT
rJMSF015F08+ TGGTCTAAGCTCTTTGCTGCAGAACTGATTGTATTCGAGAGTATCGCCNCTAGCCTTCTT
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consensus TGGTCTAAGCTCTTTGCTGCAGAACTGATTGTATTCGAGAGTATCGCCACTAGCCTTCTT

. : . : . : . : . : . :
rJMFF004F15+ CACCTCCACAACTAAGAATGAAGGAGAGAAGGCAAATAAATCTGCAGAAATTCCAAGCTT
rJMSF005K04+ CACCTCCACAACTAAGAATGANGGAGAGAAGGCAAATAAATCTGCAGAAATTCCAAGCTT
rJMFF012G02+ CACCTCCACAACTAAGAATGAAGGAGAGAAGGCAAATAAATCTGCAGAAATTCCAAGCTT
rJMSF038N22+ CACCTCCACAACTAAGAATGAAGGAGAGAAGGCAAATAAATCTGCAGAAATTCCAAGCTT
rJMSF015F08+ CACCTCCACAACTAAGAATGAAGGAGAGAAGGCAAATANATCTGCAGAAATTCCAAGCTT
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consensus CACCTCCACAACTAAGAATGAAGGAGAGAAGGCAAATAAATCTGCAGAAATTCCAAGCTT

. : . : . : . : . : . :
rJMFF004F15+ CCCTTTCCTCCCACTCTCTTGACCCTGCAACCTAACACTAGAATCACTCTTCTTTATGCT
rJMSF005K04+ CCCTTT
rJMFF012G02+ CCCTTTCCTCCCACTCTCTTGACCCTGCAACCTAACACTAGAATCACTCTTCTTTATGCT
rJMSF038N22+ CCCTTTCCTCCCACTCTCTTGACCCTGCAACCTAACACTAGAATCACTCTTCTTTATGCT
rJMSF015F08+ CCCTTTCCTCCCACTCTCTTGACCCTGCAACCTAACACTAGAATCACTCTTCTTTATGCT
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consensus CCCTTTCCTCCCACTCTCTTGACCCTGCAACCTAACACTAGAATCACTCTTCTTTATGCT

. : . : . : . : . : . :
rJMFF004F15+ AAAATTACTTGTTTTTGCCAGTTCTTCAAGCCTGGAAATCACACTGCTAGCGGGCTTAGT
rJMFF012G02+ AAAATTACTTGTTTTTGCCAGTTCTTCAAGCCTGGAAATCACACTGCTAGCGGGCTTAGT
rJMSF038N22+ AAAATTACTTGTTTT-GCCAGTTCTTCAAGCCTGGAAATCACACTGCTAGCGGGCTTAGT
rJMSF015F08+ AAAATTACTTGTTTTTGCCAGTTCTTCAAGCCTGGAAATCACACTGCTAGCGGGCTTAGT
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consensus AAAATTACTTGTTTTTGCCAGTTCTTCAAGCCTGGAAATCACACTGCTAGCGGGCTTAGT

. : . : . : . : . : . :
rJMFF004F15+ AGTGGCGAATCTTAGATCCTCCTTCTCCATCTTCTTCTTCTTCTCCTCAAACAGCGGGCT
rJMFF012G02+ AGTGGCGAATCTTAGATCCTCCTTCTCCATCTTCTTCTTCTTCTCCTCAAACAGCGGGCT
rJMSF038N22+ AGTGGCGAATCTTAGATCCTCCTTCTCCATCTTCTTCTTCTTCTCCTCAAACAGCGGGCT
rJMSF015F08+ AGTGGCGAATCTTAGATCCTCCTTCTCCATCTTCTTCTTCTTCTCCTCAAACAGCGGGCT
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consensus AGTGGCGAATCTTAGATCCTCCTTCTCCATCTTCTTCTTCTTCTCCTCAAACAGCGGGCT

. : . : . : . : . : . :
rJMFF004F15+ CAGATCGAACCCCTGAGACAAGGAGATGATATGGAAAGCATTCAAGGATTCCATTTCCTT
rJMFF012G02+ CAGATCGAACCCCTGAGACAAGGAGATGATATGGAAAGCATTCAAGGATTCCATTTCCTT
rJMSF038N22+ CAGATCGAACCCCTGAGACAAGGAGATGATATGGAAAGCATTCAAGGATTCCATTTCCTT
rJMSF015F08+ CAGATCGAACCCCTGAGACAAGGAGATGATATGGAAAGCNTTCAAGGATTCCATTTCCTT
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consensus CAGATCGAACCCCTGAGACAAGGAGATGATATGGAAAGCATTCAAGGATTCCATTTCCTT

. : . : . : . : . : . :
rJMFF004F15+ AGTTTTCCCCAAACAACCTTCATCTTCCACAGTAAACTCTTCCTCTTCCTTGCTCCTTAA
rJMFF012G02+ AGTT
rJMSF038N22+ AGTTTTCCCCAAACAACCTTCATCTTCCACAGTAAACTCTTCCTCTTCCTTGCTCCTTAA
rJMSF015F08+ AGTTTTCCCCAAACAACCTTCATCTTCCACAGTAAACTCTTCCTCTTCCTTGCTCCTTAA
____________________________________________________________
consensus AGTTTTCCCCAAACAACCTTCATCTTCCACAGTAAACTCTTCCTCTTCCTTGCTCCTTAA

. : . : . : . : . : . :
rJMFF004F15+ AGCCCTGGGGACAGATTTCTTGAACCAGGGAGAATCCATAATCTTGGA
rJMSF038N22+ AGCCCTGGGGACAGATTTCTTGAACCAGGGAGAATCCATAATCTTGGAAATGGAGATTCT
rJMSF015F08+ AGCCCTGGGGACAGATTTCTTGAACCAGGGAGAATCCATAATCTTGGAAATGGAGATNCT
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consensus AGCCCTGGGGACAGATTTCTTGAACCAGGGAGAATCCATAATCTTGGAAATGGAGATTCT

. : . : . : . : . : . :
rJMSF038N22+ CGAATTCGGATTCGGATCCAGCATCTTGGTGATCAATTTCCTAGCGTCTGATGAAAACCA
rJMSF015F08+ CGAATT
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consensus CGAATTCGGATTCGGATCCAGCATCTTGGTGATCAATTTCCTAGCGTCTGATGAAAACCA

. : . : . : . : . : . :
rJMSF038N22+ GGGCGGGGCATTTGAAATCCCCCCTGGNAAATTTTCCGGTACATGGGCTACCACGTTTTT
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consensus GGGCGGGGCATTTGAAATCCCCCCTGGNAAATTTTCCGGTACATGGGCTACCACGTTTTT

. : . : . : . : . : . :
rJMSF038N22+ CATCTTGG
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consensus CATCTTGG