Alignment Contig 1350

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF020H21+ ATCATGCATGGAACCATGGAAGTTCTCAGTTCTTGATCTTTGGTACTACAAAATATCAAA
rJMSF017I18+ TCATGCATGGAACCATGGAAGTTCTCAGTTCTTGATCTTTGGTACTACNAAATATCAAA
rJMSF020O10+ GGAAGTTCTCAGTTCTTGATCTTTGGTACTACAAAATATCAAA
rJMSF041E03+ TCATGCATGGAACCATGGAAGTTCTCAGTTCTTGATCTTTGGTACTACAAAATATCAAA
____________________________________________________________
consensus ATCATGCATGGAACCATGGAAGTTCTCAGTTCTTGATCTTTGGTACTACAAAATATCAAA

. : . : . : . : . : . :
rJMSF020H21+ CAAAGACATATTCTGCTTGCTAATACTACCCCCCACCATTGCTACCCAAGAAAAGGAGAA
rJMSF017I18+ CAAAGACNTATTCTGCTTGCTAATACTACCCCCCACCATTGCTACCCAAGAAAAGGAGAA
rJMSF020O10+ CAAAGACATATTCTGCTTGCTAATACTACCCCCCACCATTGCTACCCAAGAAAAGGAGAA
rJMSF041E03+ CAAAGACATATTCTGCTTGCTAATACTACCCCCCACCATTGCTACCCAAGAAAAGGAGAA
____________________________________________________________
consensus CAAAGACATATTCTGCTTGCTAATACTACCCCCCACCATTGCTACCCAAGAAAAGGAGAA

. : . : . : . : . : . :
rJMSF020H21+ GATGGGAGACAAAATGAGGGGCAAGAATGGAATAAAGACTGCCAAAACTAGTGTGTATGT
rJMSF017I18+ GATGGGAGACAAAATGAGGGGCAAGAATGGAATAAAGACTGCCAAAACTAGTGTGTATGT
rJMSF020O10+ GATGGGAGACAAAATGAGGGGCAAGAATGGAATAAAGACTGCCAAAACTAGTGTGTATGT
rJMSF041E03+ GATGGGAGACAAAATGAGGGGCAAGAATGGAATAAAGACTGCCAAAACTAGTGTGTATGT
____________________________________________________________
consensus GATGGGAGACAAAATGAGGGGCAAGAATGGAATAAAGACTGCCAAAACTAGTGTGTATGT

. : . : . : . : . : . :
rJMSF020H21+ ACAAGAGACTGCAATTTCATCATCATCAGCACCCACATATATAGACACTTTTTAAGGTTT
rJMSF017I18+ ACAAGAGACTGCAATTTCATCATCATCAGCACCCACATATATAGACACTTTTTAAGGTTT
rJMSF020O10+ ACAAGAGACTGCAATTTCATCATCATCAGCACCCACATATATAGACACTTTTTAAGGTTT
rJMSF041E03+ ACAAGAGACTGCAATTTCATCATCATCAGCACCCACATATATAGACACTTTTTAAGGTTT
____________________________________________________________
consensus ACAAGAGACTGCAATTTCATCATCATCAGCACCCACATATATAGACACTTTTTAAGGTTT

. : . : . : . : . : . :
rJMSF020H21+ TCAGTTTTCACTGCTGCTGAATTGTGAAAAAGACTGCAAAAGTTGGATTTAATGCTAAAA
rJMSF017I18+ TCAGTTTTCACTGCTGCTGAATTGTGAAAAANACTGCNAAAGTTGGATTTAATGCTAAAA
rJMSF020O10+ TCAGTTTTCACTGCTGCTGAATTGTGAAAAAGACTGCAAAAGTTGGATTTAATGCTAAAA
rJMSF041E03+ TCAGTTTTCACTGCTGCTGAATTGTGAAAAAGACTGCAAAAGTTGGATTTAATGCTAAAA
____________________________________________________________
consensus TCAGTTTTCACTGCTGCTGAATTGTGAAAAAGACTGCAAAAGTTGGATTTAATGCTAAAA

. : . : . : . : . : . :
rJMSF020H21+ AGGAACATTGGCTTCCCACATCAGATGGAAGGGAACTGCTAGCTGGATCTGTGTGATGCC
rJMSF017I18+ AGGAACATTGGCTTCCCACATCAGATGGAAGGGAACTGCTAGCTGGATCTGTGTGATGCC
rJMSF020O10+ AGGAACATTGGCTTCCCACATCAGATGGAAGGGAACTGCTAGCTGGATCTGTGTGATGCC
rJMSF041E03+ AGGAACATTGGCTTCCCACATCAGATGGAAGGGAACTGCTAGCTGGATCTGTGTGATGCC
____________________________________________________________
consensus AGGAACATTGGCTTCCCACATCAGATGGAAGGGAACTGCTAGCTGGATCTGTGTGATGCC

. : . : . : . : . : . :
rJMSF020H21+ GACGAGTTTTCATTGTTCTCGCTGGTAATATAAGAAACTACTACGGTAATGTCATCCAGC
rJMSF017I18+ GACGAGTTTTCATTGTTCTCGCTGGTAATATAAGAAACTACTACGGTAATGTCATCCAGC
rJMSF020O10+ GACGAGTTTTCATTGTTCTCGCTGGTAATATAAGAAACTACTACGGTAATGTCATCCAGC
rJMSF041E03+ GACGAGTTTTCATTGTTCTCGCTGGTAATATAAGAAACTACTACGGTAATGTCATCCAGC
____________________________________________________________
consensus GACGAGTTTTCATTGTTCTCGCTGGTAATATAAGAAACTACTACGGTAATGTCATCCAGC

. : . : . : . : . : . :
rJMSF020H21+ TTGCCACCATAATAACGAAATCCGGCTTCTTGGGCTGCGGTAGAGAAAGGTGTCTGCCTG
rJMSF017I18+ TTGCCACCATAATAACGAAATCCGGCTTCTTGGGCTGCGGTAGAGAAAGGTGTCTGCCTG
rJMSF020O10+ TTGCCACCATAATAACGAAATCCGGCTTCTTGGGCTGCGGTAGAGAAAGGTGTCTGCCTG
rJMSF041E03+ TTGCCACCATAATAACGAAATCCGGCTTCTTGGGCTGCGGTAGAGAAAGGTGTCTGCCTG
____________________________________________________________
consensus TTGCCACCATAATAACGAAATCCGGCTTCTTGGGCTGCGGTAGAGAAAGGTGTCTGCCTG

. : . : . : . : . : . :
rJMSF020H21+ TTTTTATCCTGTGCTCGCTGACGTGCCAATGCTGCTATCTTCTGAGCAGTCACCTGTGGC
rJMSF017I18+ TTTTTATCCTGTGCTCGCTGACGTGCCAATGCTGCTATCTTCTGAGCAGNCACCTGTGGC
rJMSF020O10+ TTTTTATCCTGTGCTCGCTGACGTGCCAATGCTGCTATCTTCTGAGCAGTCACCTGTGGC
rJMSF041E03+ TTTTTATCCTGTGCTCGCTGACGTGCCAATGCTGCTATCTTCTGAGCAGTCACCTGTGGC
____________________________________________________________
consensus TTTTTATCCTGTGCTCGCTGACGTGCCAATGCTGCTATCTTCTGAGCAGTCACCTGTGGC

. : . : . : . : . : . :
rJMSF020H21+ CCTAAGCCAGCTCTTGTAGCATGAACCACAACTGCAGTAATATCGCTGTTATAGAGATTG
rJMSF017I18+ CCTAANCCAGCTCTTGTAGCATGAACCACAACTGCAGTAATATCGCTGTTATAGAGATTG
rJMSF020O10+ CCTAAGCCAGCTCTTGTAGCATGAACCACAACTGCAGTAATATCGCTGTTATAGAGATTG
rJMSF041E03+ CCTAAGCCAGCTCTTGTAGCATGAACCACAACTGCAGTAATATCGCTGTTATAGAGATTG
____________________________________________________________
consensus CCTAAGCCAGCTCTTGTAGCATGAACCACAACTGCAGTAATATCGCTGTTATAGAGATTG

. : . : . : . : . : . :
rJMSF020H21+ TCAAAGAGGCCATCTGTACCAGCAATTATGACATCTCCTCGAGCAACTGGAACTTTGAAC
rJMSF017I18+ TCAAAGAGGCCATCTGTACCAGCAATTATGACATCTCCTCGAGCANCTGGAACTTTGAAC
rJMSF020O10+ TCAAAGAGGCCATCTGTACCAGCAATTATGACATCTCCTCGAGCAACTGGAACTTTGAAC
rJMSF041E03+ TCAAAGAGGCCATCTGTACCAGCAATTATGACATCTCCTCGAGCAACTGGAACTTTGAAC
____________________________________________________________
consensus TCAAAGAGGCCATCTGTACCAGCAATTATGACATCTCCTCGAGCAACTGGAACTTTGAAC

. : . : . : . : . : . :
rJMSF020H21+ ACCTGTCCAGAGCTCGGGAGATCACCAGCGTTGCCACATTCTAATTGATATGTGAAATTG
rJMSF017I18+ ACCTGTCCAGAGCTCGGGAGATCACCAGCGTTGCCACATTCTAATTGATATGTGAAATTG
rJMSF020O10+ ACCTGTCCAGAGCTCGGGAGATCACCAGCGTTGCCACATTCTAATTGATATGTGAAATTG
rJMSF041E03+ ACCTGTCCAGAGCTCGGGAGATCACCAGCGTTGCCACATTCTAATTGATATGTGAAATTG
____________________________________________________________
consensus ACCTGTCCAGAGCTCGGGAGATCACCAGCGTTGCCACATTCTAATTGATATGTGAAATTG

. : . : . : . : . : . :
rJMSF020H21+ AAATCATGCTGCTGAGA
rJMSF017I18+ AAATCATGCTGCTGAGA
rJMSF020O10+ AAATCATGCTGCTGAGA
rJMSF041E03+ AAATCATGCTGCTGAGAAGGAGATCTGAAACAGTACATCCATCCCTCACCACCATGAATC
____________________________________________________________
consensus AAATCATGCTGCTGAGAAGGAGATCTGAAACAGTACATCCATCCCTCACCACCATGAATC

. : . : . : . : . : . :
rJMSF041E03+ CACTATCGCCTAATTGATGGCATGGAGACCCTGCTGATCTGTAAGGGCAATGATACAA
____________________________________________________________
consensus CACTATCGCCTAATTGATGGCATGGAGACCCTGCTGATCTGTAAGGGCAATGATACAA