Alignment Contig 13494

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF039J07+ GGCGTTTCATTTCAGACTCTTCGCAGTTAAATTGCGCCCCTTTGCCGGGGAGATCGAGAT
JMFF019C06+ AGTTAAATTGCGCCCCTTTGCCGGGGAGATCGAGAT
JMFF007B07+ GAGAT
JMFF005N22+ GAGAT
____________________________________________________________
consensus GGCGTTTCATTTCAGACTCTTCGCAGTTAAATTGCGCCCCTTTGCCGGGGAGATCGAGAT

. : . : . : . : . : . :
JMSF039J07+ CTGTGCTTTCACCCCTCTCTCTCTCGCTTTCTCTCTCTTGATCTCAGTATATTCTTATAT
JMFF019C06+ CTGTGCTTTCACCCCTCTCTCTCTCGCTTTCTCTCTCTTGATCTCAGTATATTCTTATAT
JMFF007B07+ CTGTGCTTTCACCCCTCTCTCTCTCGCTTTCTCTCTCTTGATCTCAGTATATTCTTATAT
JMFF005N22+ CTGTGCTTTCACCCCTCTCTCTCTCGCTTTCTCTCTCTTGATCTCAGTATATTCTTATAT
JMFF034O08+ TGCTTTCACCCCTCTCTCTCTCGCTTTCTCTCTCTTGATCTCAGTATATTCTTATAT
____________________________________________________________
consensus CTGTGCTTTCACCCCTCTCTCTCTCGCTTTCTCTCTCTTGATCTCAGTATATTCTTATAT

. : . : . : . : . : . :
JMSF039J07+ ATATATAGAATAGATAGATATACACGCTCATACATAGGTACGGGTGATTGGAAATGAGGG
JMFF019C06+ ATATATAGAATAGATAGATATACACGCTCATACATAGGTACGGGTGATTGGAAATGAGGG
JMFF007B07+ ATATATAGAATAGATAGATATACACGCTCATACATAGGTACGGGTGATTGGAAATGAGGG
JMFF005N22+ ATATATAGAATAGATAGATATACACGCTCATACATAGGTACGGGTGATTGGAAATGAGGG
JMFF034O08+ ATATATAGAATAGATAGATATACACGCTCATACATAGGTACGGGTGATTGGAAATGAGGG
JMSF010C05+ ACATAGGTACGGGTGATTGGAAATGAGGG
JMFS037G04+ ATAGGTACGGGTGATTGGAAATGAGGG
____________________________________________________________
consensus ATATATAGAATAGATAGATATACACGCTCATACATAGGTACGGGTGATTGGAAATGAGGG

. : . : . : . : . : . :
JMSF039J07+ AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG
JMFF019C06+ AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG
JMFF007B07+ AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG
JMFF005N22+ AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG
JMFF034O08+ AAATGGGGAAGAAGAGGGCG
JMSF010C05+ AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG
JMFS037G04+ AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG
____________________________________________________________
consensus AAATGGGGAAGAAGAGGGCGGTGGCGCGGTTCGTCGCCGTTCTGCTCGTGGTCTGCTGCG

. : . : . : . : . : . :
JMSF039J07+ CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC
JMFF019C06+ CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC
JMFF007B07+ CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC
JMFF005N22+ CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC
JMSF010C05+ CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC
JMFS037G04+ CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC
____________________________________________________________
consensus CGGCGCCGGTGAGATCGGATGGATCGGATCACAAGTACAAGGCCGGAGATGCAGTCCCTC

. : . : . : . : . : . :
JMSF039J07+ TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC
JMFF019C06+ TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC
JMFF007B07+ TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC
JMFF005N22+ TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC
JMSF010C05+ TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC
JMFS037G04+ TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC
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consensus TGTACGCCAACAAGGTCGGGCCTTTTCACAATCCGAGTGAAACATACCGTTACTTTGATC

. : . : . : . : . : . :
JMSF039J07+ TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA
JMFF019C06+ TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA
JMFF007B07+ TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA
JMFF005N22+ TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA
JMSF010C05+ TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA
JMFS037G04+ TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA
____________________________________________________________
consensus TTCCATTCTGCCTAACAGATGATGTGAAAGAGAAAAAGGAAGCCCTTGGTGAAGTCTTAA

. : . : . : . : . : . :
JMSF039J07+ ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATTTTATGTATGATAAGGACTCTG
JMFF019C06+ ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATTTTATGTATGATAAGGACTCTG
JMFF007B07+ ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATTTTATGTATGATAAGGACTCTG
JMFF005N22+ ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATTTTATGTATGATAAGGACTCTG
JMSF010C05+ ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATT
JMFS037G04+ ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATTTTATGTATGATAAGGACTCTG
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consensus ATGGTGACCGGTTGGTCAGTGCACCCTACAAGCTTGATTTTATGTATGATAAGGACTCTG

. : . : . : . : . : . :
JMSF039J07+ AAAGTGTGTGCAAGAAGAAACTATCACAGAAAGAAGTTGCACAGTTCCGTGAAGCTGTTT
JMFF019C06+ AAAGTGTGTGCAAGAAGAAACTATCACAGAAAGAAGTTGCACAGTTCCGTGAAGCTGTTT
JMFF007B07+ AAAGTGTGTGCAAGAAGAAACTATCACAGAAAGAAGTTGCACAGTTCCGTGAAGCTGTTT
JMFF005N22+ AAAGTGTGTGCAAGAAGAAACTATCACAGAAAGAAGTTGCACAGTTCCGTGAAGCTGTTT
JMFS037G04+ AAAGTGTGTGCAAGAAGAAACTATCACAGAAAGAAGTTGCACAGTTCCGTGAAGCTGTTT
____________________________________________________________
consensus AAAGTGTGTGCAAGAAGAAACTATCACAGAAAGAAGTTGCACAGTTCCGTGAAGCTGTTT

. : . : . : . : . : . :
JMSF039J07+ CGAAGGATTACTATTTCCAAATGTACTATGATGACCTGCCTATTTGGGGTTTCCTTGGGA
JMFF019C06+ CGAAGGATTACTATTTCCAAATGTACTATGATGACCTGCC
JMFF007B07+ CNAAGGATTACTATTTCCAAATGTACTATGATGACCTGCC
JMFF005N22+ CGAAGGATTACTATTTCCAAATGTACTATGATGACCTGC
JMFS037G04+ CGAAGGATTACTATTTCCAAATGTACTATGATGACCTGCCTATTTGGGGTTTCCTTGGGA
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consensus CGAAGGATTACTATTTCCAAATGTACTATGATGACCTGCCTATTTGGGGTTTCCTTGGGA

. : . : . : . : . : . :
JMSF039J07+ AAGTTGATAAGGATGGAAAATCTGATCCTAGTGAATTCAAATACTACCTATTCAAGCATC
JMFS037G04+ AAGTTGATAAGGATGGAAAATCTGATCCTAGTGAATT-AAATACTACCTATTCAAGCATC
____________________________________________________________
consensus AAGTTGATAAGGATGGAAAATCTGATCCTAGTGAATTCAAATACTACCTATTCAAGCATC

. : . : . : . : . : . :
JMSF039J07+ TTCACTTTGAGATCTTTTAC
JMFS037G04+ TTCACTTTGAGATCTTTTACAACAAGGATCGTGTGATTGAGATTAATGCGCGAACTGATC
____________________________________________________________
consensus TTCACTTTGAGATCTTTTACAACAAGGATCGTGTGATTGAGATTAATGCGCGAACTGATC

. : . : . : . : . : . :
JMFS037G04+ CTAGTGCCCT
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consensus CTAGTGCCCT