Alignment Contig 13489

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF039E04+ TACTCGGAGTTGATACACAAAAATGGCGCTTTACCTGTTGTACGAGTCGGCCTCTGGTTA
JMSF029L06+ GAGTTGATACACAAAAATGGCGCTTTACCTGTTGTACGAGTCGGCCTCTGGTTA
JMFF044D06+ GAGTTGATACACAAAAATGGCGCTTTACCTGTTGTACGAGTCGGCCTCTGGTTA
JMFF045C14+ GAGTTGATACACAAAAATGGCGCTTTACCTGTTGTACGAGTCGGCCTCTGGTTA
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consensus TACTCGGAGTTGATACACAAAAATGGCGCTTTACCTGTTGTACGAGTCGGCCTCTGGTTA

. : . : . : . : . : . :
JMSF039E04+ TGGGCTGTTCCTGGCGCACGGGCTTGACGAAATCGGACAGAGCACCGATGCTGTCCGGAA
JMSF029L06+ TGGGCTGTTCCTGGCGCACGGGCTTGACGAAATCGGACAGAGCACCGATGCTGTCCGGAA
JMFF044D06+ TGGGCTGTTCCTGGCGCACGGGCTTGACGAAATCGGACAGAGCACCGATGCTGTCCGGAA
JMFF045C14+ TGGGCTGTTCCTGGCGCACGGGCTTGACGAAATCGGACAGAGCACCGATGCTGTCCGGAA
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consensus TGGGCTGTTCCTGGCGCACGGGCTTGACGAAATCGGACAGAGCACCGATGCTGTCCGGAA

. : . : . : . : . : . :
JMSF039E04+ GTCAATCTCCGATCTCAATCGCTTCGGTAAAGTTGTAAAACTCGTTGCATTTAACCCCTT
JMSF029L06+ GTCAATCTCCGATCTCAATCGCTTCGGTAAAGTTGTAAAACTCGTTGCATTTAACCCCTT
JMFF044D06+ GTCAATCTCCGATCTCAATCGCTTCGGTAAAGTTGTAAAACTCGTTGCATTTAACCCCTT
JMFF045C14+ GTCAATCTCCGATCTCAATCGCTTCGGTAAAGTTGTAAAACTCGTTGCATTTAACCCCTT
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consensus GTCAATCTCCGATCTCAATCGCTTCGGTAAAGTTGTAAAACTCGTTGCATTTAACCCCTT

. : . : . : . : . : . :
JMSF039E04+ CGAGTCCGCTCTCGATGCCCTGAATCAGTGCAACGCCGTTTCCGAAGGGCAAATGACAGA
JMSF029L06+ CGAGTCCGCTCTCGATGCCCTGAATCAGTGCAACGCCGTTTCCGAAGGGCAAATGACAGA
JMFF044D06+ CGAGTCCGCTCTCGATGCCCTGAATCAGTGCAACGCCGTTTCCGAAGGGCAAATGACAGA
JMFF045C14+ CGAGTCCGCTCTCGATGCCCTGAATCAGTGCAACGCCGTTTCCGAAGGGCAAATGACAGA
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consensus CGAGTCCGCTCTCGATGCCCTGAATCAGTGCAACGCCGTTTCCGAAGGGCAAATGACAGA

. : . : . : . : . : . :
JMSF039E04+ TGAGCTAAGGAACTTCTTGGAACTTACTCTCCCAAAGGTAAAAGAGAGTAAGAAGGCTAA
JMSF029L06+ TGAGCTAAGGAACTTCTTGGAACTTACTCTCCCAAAGGTAAAAGAGAGTAAGAAGGCTAA
JMFF044D06+ TGAGCTAAGGAACTTCTTGGAACTTACTCTCCCAAAGGTAAAAGAGAGTAAGAAGGCTAA
JMFF045C14+ TGAGCTAAGGAACTTCTTGGAACTTACTCTCCCAAAGGTAAAAGAGAGTAAGAAGGCTAA
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consensus TGAGCTAAGGAACTTCTTGGAACTTACTCTCCCAAAGGTAAAAGAGAGTAAGAAGGCTAA

. : . : . : . : . : . :
JMSF039E04+ GTTCAGTTTAGGCCTTGCAGAGCCTAAGCTTGGATCACATATATTTGAAGAAACTAAAAT
JMSF029L06+ GTTCAGTTTAGGCCTTGCAGAGCCTAAGCTTGGATCACATATATTTGAAGAAACTAAAAT
JMFF044D06+ GTTCAGTTTAGGCCTTGCAGAGCCTAAGCTTGGATCACATATATTTGAAGAAACTAAAAT
JMFF045C14+ GTTCAGTTTAGGCCTTGCAGAGCCTAAGCTTGGATCACATATATTTGAAGAAACTAAAAT
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consensus GTTCAGTTTAGGCCTTGCAGAGCCTAAGCTTGGATCACATATATTTGAAGAAACTAAAAT

. : . : . : . : . : . :
JMSF039E04+ TCCTTGCCAAAGCAATGAATTTGTTCTAGAGCTTTTGCGAGGGGTGAGGTTGCATTTTGA
JMSF029L06+ TCCTTGCCAAAGCAATGAATTTGTTCTAGAGCTTTTGCGAGGGGTGAGGTTGCATTTTGA
JMFF044D06+ TCCTTGCCAAAGCAATGAATTTGTTCTAGAGCTTTTGCGAGGGGTGAGGTTGCATTTTGA
JMFF045C14+ TCCTTGCCAAAGCAATGAATTTGTTCTAGAGCTTTTGCGAGGGGTGAGGTTGCATTTTGA
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consensus TCCTTGCCAAAGCAATGAATTTGTTCTAGAGCTTTTGCGAGGGGTGAGGTTGCATTTTGA

. : . : . : . : . : . :
JMSF039E04+ GAAGTTTATTGAAAACCTAAAGCCGGGTGACCTGGAGAAAGCTCAGCTGGGTTTGGGACA
JMSF029L06+ GAAGTTTATTGAAAACCTAAAGCCGGGTGACCTGGAGAAAGCTCAGCTGGGTTTGGGACA
JMFF044D06+ GAAGTTTATTGAAAACCTAAAGCCGGGTGACCTGGAGAAAGCTCAGCTGGGTTTGGGACA
JMFF045C14+ GAAGTTTATTGAAAACCTAAAGCCGGGTGACCTGGAGAAAGCTCAGCTGGGTTTGGGACA
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consensus GAAGTTTATTGAAAACCTAAAGCCGGGTGACCTGGAGAAAGCTCAGCTGGGTTTGGGACA

. : . : . : . : . : . :
JMSF039E04+ CAGCTATAGCAGAGCAAAGGTCAAGTTCAATGTTAATCGGGTCGACAATATGGTTATTCA
JMSF029L06+ CAGCTATAGCAGAGCAAAGGTCAAGTTCAATGTTAATCGGGTCGACAATATGGTTATTCA
JMFF044D06+ CAGCTATAGCAGAGCAAAGGTCAAGTTCAATGTTAATCGGGTCGACAATATGGTTATTCA
JMFF045C14+ CAGCTATAGCAGAGCAAAGGTCAAGTTCAATGTTAATCGGGTCGACNATATGGTTATTCA
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consensus CAGCTATAGCAGAGCAAAGGTCAAGTTCAATGTTAATCGGGTCGACAATATGGTTATTCA

. : . : . : . : . : . :
JMSF039E04+ AGCAATATTCTTGCTTGATACTCTTGATAAAGATGTAAATACCTTCTCAATGAGAGTCAG
JMSF029L06+ AGCAATATTCTTGCTTGATACTCTTGATAAAGATGTAAATACCTTCTCAATGAGAGTCAG
JMFF044D06+ AGCAATATTCTTGCTTGATACTCTTNGATAAGAATGTAATACCTTCTNCATGAGAGTCAG
JMFF045C14+ AGCAATATTCTTGCTTGATACTCTTGATAAAGATGTAAATACCTTCTNCATGAGAGTCAG
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consensus AGCAATATTCTTGCTTGATACTCTTGATAAAGATGTAAATACCTTCTCAATGAGAGTCAG

. : . : . : . : . : . :
JMSF039E04+ AGAATGGTATTCTTGGCATTTCCCGGAACTTGTGAAGATTATTAATGATAATTATCTATA
JMSF029L06+ AGAATGGTATTCTTGGCATTTCCCGGAACTTGTGAAGATTATTAATGATAATTATCTATA
JMFF044D06+ AGAATGGTATTCTTGGCATTTCCCGGA
JMFF045C14+ AGAATGGTATTCTTGGCATTTCCCGGA
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consensus AGAATGGTATTCTTGGCATTTCCCGGAACTTGTGAAGATTATTAATGATAATTATCTATA

. : . : . : . : . : . :
JMSF039E04+ TGCCAAACTTGCAAA
JMSF029L06+ TGCC
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consensus TGCCAAACTTGCAAA