Alignment Contig 1345

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF019D12+ AGATGGATATGAACTATTGTGCTGTAAATGCANAGTTGGAAAAAGGTTTTCAAAAGTGAG
rJMFF034O08+ AGATGGATATGAACTATTGTGCTGTAAATGCAAAGTTGGAAAAAGGTTTTCAAAAGTGAG
rJMFF007B07+ AAAGTGAG
rJMFF005N22+ GAG
____________________________________________________________
consensus AGATGGATATGAACTATTGTGCTGTAAATGCAAAGTTGGAAAAAGGTTTTCAAAAGTGAG

. : . : . : . : . : . :
rJMSF019D12+ GCAGNAAGATAGTACAAGCTTTTCTTCCTCTTGAAAAATCCTACTGTTCCTACAAAGTCC
rJMFF034O08+ GCAGTAAGATAGTACAAGCTTTTCTTCCTCTTGAAAAATCCTACTGTTCCTACAAAGTCC
rJMFF007B07+ GCAGTAAGATAGTACAAGCTTTTCTTCCTCTTGAAAAATCCTACTGTTCCTACAAAGTCC
rJMFF005N22+ GCAGTAAGATAGTACAAGCTTTTCTTCCTCTTGAAAAATCCTACTGTTCCTACAAAGTCC
____________________________________________________________
consensus GCAGTAAGATAGTACAAGCTTTTCTTCCTCTTGAAAAATCCTACTGTTCCTACAAAGTCC

. : . : . : . : . : . :
rJMSF019D12+ TGGATGCCAGATAGCCCTACCAAATTTGCGGGGGGTGCTGTATGGAGGAGTCNAAGGCCA
rJMFF034O08+ TGGATGCCAGATAGCCCTACCAAATTTGCGGGGGGTGCTGTATGGAGGAGTCGAAGGCCA
rJMFF007B07+ TGGATGCCAGATAGCCCTACCAAATTTGCGGGGGGTGCTGTATGGAGGAGTCGAAGGCCA
rJMFF005N22+ TGGATGCCAGATAGCCCTACCAAATTTGCGGGGGGTGCTGTATGGAGGAGTCGAAGGCCA
____________________________________________________________
consensus TGGATGCCAGATAGCCCTACCAAATTTGCGGGGGGTGCTGTATGGAGGAGTCGAAGGCCA

. : . : . : . : . : . :
rJMSF019D12+ CCAACTTAAACTTACTACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
rJMFF034O08+ CCAACTTAAACTTACTACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
rJMFF007B07+ CCAACTTAAACTTACTACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
rJMFF005N22+ CCAACTTAAACTTACTACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
rJMSF010C05+ TACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
rJMFF019C06+ TACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
rJMSF039J07+ TACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG
____________________________________________________________
consensus CCAACTTAAACTTACTACTCACACTTGATTGAGCGGTATATGTGGCGAACGAAGAATAAG

. : . : . : . : . : . :
rJMSF019D12+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
rJMFF034O08+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
rJMFF007B07+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
rJMFF005N22+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
rJMSF010C05+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
rJMFF019C06+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
rJMSF039J07+ GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG
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consensus GATGCGCGGAAGCCAACCGTCCCGAGCATGAGGAAGAAGCCGTAGCAAATGCAAGCCATG

. : . : . : . : . : . :
rJMSF019D12+ TACCCGAAGAANAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTANTAN
rJMFF034O08+ TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG
rJMFF007B07+ TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG
rJMFF005N22+ TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG
rJMSF010C05+ TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG
rJMFF019C06+ TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG
rJMSF039J07+ TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG
____________________________________________________________
consensus TACCCGAAGAAGAACGAGGTTTGCATGAAGCCTGACATGTCTGAGCGTGCATAGTAGTAG

. : . : . : . : . : . :
rJMSF019D12+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
rJMFF034O08+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
rJMFF007B07+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
rJMFF005N22+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
rJMSF010C05+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
rJMFF019C06+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
rJMSF039J07+ TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC
____________________________________________________________
consensus TACAAACAGTAGGCATAGATGAATAGTCCAGTTGATCCACCGCATAGGAAAGACCTCCAC

. : . : . : . : . : . :
rJMSF019D12+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTANGTTAAAGCCACAGTAATAAAAGCN
rJMFF034O08+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTAGGTTAAAGCCACAGTAATAAAAGCA
rJMFF007B07+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTANGTTAAAGCCACAGTAATAAAAGCA
rJMFF005N22+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTAGGTTAAAGCCACAGTAATAAAAGCA
rJMSF010C05+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTAGGTTAAAGCCACAGTAATAAAAGCA
rJMFF019C06+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTAGGTTAAAGCCACAGTAATAAAAGCA
rJMSF039J07+ CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTAGGTTAAAGCCACAGTAATAAAAGCA
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consensus CACCATTCATGGTCTTCGGCAGCAAGTTGAAAGTAGGTTAAAGCCACAGTAATAAAAGCA

. : . : . : . : . : . :
rJMSF019D12+ GTAACGATCANAAGAATANTGAANACTATAAATAAGATGCTGTAAATTGTGTANATCCTG
rJMFF034O08+ GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG
rJMFF007B07+ GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG
rJMFF005N22+ GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG
rJMSF010C05+ GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG
rJMFF019C06+ GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG
rJMSF039J07+ GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG
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consensus GTAACGATCAGAAGAATAATGAAGACTATAAATAAGATGCTGTAAATTGTGTAGATCCTG

. : . : . : . : . : . :
rJMSF019D12+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCANTATNTATGGCACTGAAAGGCAAA
rJMFF034O08+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA
rJMFF007B07+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA
rJMFF005N22+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA
rJMSF010C05+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA
rJMFF019C06+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA
rJMSF039J07+ TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA
____________________________________________________________
consensus TGGCCCCAAACACTTGCAAATATGTAGTACAGTTCAATATATATGGCACTGAAAGGCAAA

. : . : . : . : . : . :
rJMSF019D12+ AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGATACCAAGGTAATGGTGGGATTTCT
rJMFF034O08+ AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGAT
rJMFF007B07+ AATCCAGCCATTGCCATCTGAGG
rJMFF005N22+ AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGATACCAAGGTAATGGTGGGATTTCT
rJMSF010C05+ AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGATACCAAGGTAATGGTGGGATTTCT
rJMFF019C06+ AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGATACCAAGGTAATGGTGGGATTTCT
rJMSF039J07+ AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGATACCAAGGTAATGGTGGGATTTCT
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consensus AATCCAGCCATTGCCATCTGAGGAAGAGCTCCACGATACCAAGGTAATGGTGGGATTTCT

. : . : . : . : . : . :
rJMSF019D12+ CTTGGGTATTTAGTGGTACGGCAAGGAGCTTGAAACTCAGCCTTGCTATTCTTTCCGGCA
rJMFF005N22+ CTTGGGTATTTAGTGGTACGGCAAGGAGCTTGAAACTCAGCCTTGCTATTCTTTCCGGCA
rJMSF010C05+ CTTGGGTATTTAGTGGTACGGCAAGGA
rJMFF019C06+ CTTGGGTATTTAGTGGTACGGCAAGGAGCTTGAAACTCAGCCTTGCTATTCTTTCCGGCA
rJMSF039J07+ CTTGGGTATTTAGTGGTACGGCAAGGAGCTTGAAACTCAGCCTTGCTATTCTTTCCGGCA
____________________________________________________________
consensus CTTGGGTATTTAGTGGTACGGCAAGGAGCTTGAAACTCAGCCTTGCTATTCTTTCCGGCA

. : . : . : . : . : . :
rJMSF019D12+ A
rJMFF005N22+ ATCCCTCCCAAGACAAGCAAAGGTGATGTAACAAGAGCCCATATTAAA
rJMFF019C06+ A
rJMSF039J07+ ATCCCTCCCAAGACAAGCAAAGGTGATGTAACAAGAGCCCATATTAAAAAGATAACCACA
____________________________________________________________
consensus ATCCCTCCCAAGACAAGCAAAGGTGATGTAACAAGAGCCCATATTAAAAAGATAACCACA

. : . : . : . : . : . :
rJMSF039J07+ ATGGTACCAAATGGTAGTGCTGCCGTAGCACTGTAAGCAATTGCTACAGTGTTCA
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consensus ATGGTACCAAATGGTAGTGCTGCCGTAGCACTGTAAGCAATTGCTACAGTGTTCA