Alignment Contig 13369

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF023I12+ AGGACTTTTGACTCACCAAAGCATAAGTTTGAACCGTGCCTCTTTCTCTCTATCTCTCTC
JMFF010H24+ ATCTCTCTC
JMFF020M04+ ATCTCTCTC
JMFF019D09+ ATCTCTCTC
JMFF019N22+ CTCTC
JMFF039I24+ ATCTCTCTC
JMSF024M20+ TCTCTCTC
____________________________________________________________
consensus AGGACTTTTGACTCACCAAAGCATAAGTTTGAACCGTGCCTCTTTCTCTCTATCTCTCTC

. : . : . : . : . : . :
JMSF023I12+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMFF010H24+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMFF022B03+ GATATCCTGTTATTCTTCTCTTCAT
JMFF020M04+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMFF019D09+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMFF019N22+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMFF039I24+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMSF024M20+ TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMFS027A07+ AGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
JMSF044A23+ GAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT
____________________________________________________________
consensus TCATCTTTTGTCGAAGAAACGCATTGTCGAAAAGTGATACCCTGTTATTCTTCTCTTCAT

. : . : . : . : . : . :
JMSF023I12+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFF010H24+ CCGCAACCGCAGCAAGGA----CTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFF022B03+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFF020M04+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFF019D09+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFF019N22+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFF039I24+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMSF024M20+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMFS027A07+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
JMSF044A23+ CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC
____________________________________________________________
consensus CCGCAACCGCAGCAAGGAAGGACTGGAATAGGAGAGTTTTCTGAATATGTGGGCAGCTTC

. : . : . : . : . : . :
JMSF023I12+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFF010H24+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFF022B03+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFF020M04+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFF019D09+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFF019N22+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFF039I24+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMSF024M20+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMFS027A07+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
JMSF044A23+ TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG
____________________________________________________________
consensus TTGCCTTGCGTCATGCTGTGCTGCGTGCGCCTGTGATGCCTGCCGGACGGTGGTGTCAGG

. : . : . : . : . : . :
JMSF023I12+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFF010H24+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFF022B03+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFF020M04+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFF019D09+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFF019N22+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFF039I24+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMSF024M20+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMFS027A07+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
JMSF044A23+ GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT
____________________________________________________________
consensus GATCAGCCGCCGCTCCGCTCGTATTGCATACTGTGGTCTTTTTGGGCTGTCGCTGATTGT

. : . : . : . : . : . :
JMSF023I12+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFF010H24+ TTCATGGATTCTTCGAGAAGT-GCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFF022B03+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFF020M04+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFF019D09+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFF019N22+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFF039I24+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMSF024M20+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMFS027A07+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
JMSF044A23+ TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA
____________________________________________________________
consensus TTCATGGATTCTTCGAGAAGTTGCTGCTCCTCTCATGGAGAATATCCCATGGATTAATCA

. : . : . : . : . : . :
JMSF023I12+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFF010H24+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFF022B03+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFF020M04+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFF019D09+ TTTCCACAAAACACCAGATAGGGAATG-TTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFF019N22+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFF039I24+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMSF024M20+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMFS027A07+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
JMSF044A23+ TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT
____________________________________________________________
consensus TTTCCACAAAACACCAGATAGGGAATGGTTTGAAACAGATGCAGTACTTCGAGTTAGCTT

. : . : . : . : . : . :
JMSF023I12+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFF010H24+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFF022B03+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFF020M04+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFF019D09+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFF019N22+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFF039I24+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMSF024M20+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMFS027A07+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
JMSF044A23+ GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA
____________________________________________________________
consensus GGGAAACTTCACGTTCTTTACCATCCTATCAATCATGATGATTGGTATAAAGAATCAGAA

. : . : . : . : . : . :
JMSF023I12+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFF010H24+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFF022B03+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFF020M04+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFF019D09+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFF019N22+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFF039I24+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMSF024M20+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMFS027A07+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
JMSF044A23+ GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT
____________________________________________________________
consensus GGACCCTCGTGATAATTTGCACCATGGTGGATGGATGATGAAAGTCATCTGCTGGTTCCT

. : . : . : . : . : . :
JMSF023I12+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAACTTC
JMFF010H24+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGT
JMFF022B03+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAA
JMFF020M04+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAA
JMFF019D09+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTC
JMFF019N22+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTC
JMFF039I24+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAACTTC
JMSF024M20+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAACTTC
JMFS027A07+ TTTAGTAATATTTATGTTTTTTGTTCCATATGAGCTCATCAGCTTTTATGAGTCAACTTC
JMSF044A23+ TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAACTTC
____________________________________________________________
consensus TTTAGTAATATTTATGTTTTTTGTTCCAAATGAGCTCATCAGCTTTTATGAGTCAACTTC

. : . : . : . : . : . :
JMSF023I12+ GAAGTTTGGTTCAGGATTGTTTCTTCTTGTTCAAGTTGTCCTTTTGTTGGACTTTGTCCA
JMFF039I24+ GAAGTTTGGTTCAGGATTGTTTCTTCTTGTT
JMSF024M20+ GAAGTTTGGTTCAGGATTGTTTCTTCTTGTTCAAGTTGTCCTTTTGTTGGACTTTGTCCA
JMFS027A07+ GAAGTTTGGTTCAGGATTGTTTCTTCTTGTTCAAGTTGTCCTTTTGTTGGACTTTGTCCA
JMSF044A23+ GAAGTTTGGTTCAGGATTGTTTCTTCTTGTTCAAGTTGTCCTTTTGTTGGACTTTGTCCA
____________________________________________________________
consensus GAAGTTTGGTTCAGGATTGTTTCTTCTTGTTCAAGTTGTCCTTTTGTTGGACTTTGTCCA

. : . : . : . : . : . :
JMSF023I12+ TGGATGGAA
JMSF024M20+ TGGATGGAATGACAAATGGGTTGGAT
JMFS027A07+ TGGATGGAA
JMSF044A23+ TGGATGGAATGACAAATGGGTTGGATATGATGAGCAGTTCTGGTATGTGGCCTTGCTTGT
____________________________________________________________
consensus TGGATGGAATGACAAATGGGTTGGATATGATGAGCAGTTCTGGTATGTGGCCTTGCTTGT

. : . : . : . : . : . :
JMSF044A23+ TGTTTCACTTGTATGTTATGTGGCAACTTTTGCCATCACTGGAGTTCTTTTTCATTTCTT
____________________________________________________________
consensus TGTTTCACTTGTATGTTATGTGGCAACTTTTGCCATCACTGGAGTTCTTTTTCATTTCTT

. : . : . : . : . : . :
JMSF044A23+ TGCTCCATCTGGACAANAT
____________________________________________________________
consensus TGCTCCATCTGGACAANAT