Alignment Contig 13224

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF004L19+ GCTAAAGCTTCGACAAGCATCAGTGCATCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA
JMSF018E21+ AAAGCTTCGACAAGCATCAGTGCATCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA
JMSF001N22+ AAAGCTTCGACAAGCATCAGTGCATCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA
JMSF019C01+ AAAGCTTCGACAAGCATCAGTGCATCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA
JMSF047F05+ ATCAGTGCATCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA
JMFN042G21+ GAA
JMFS078G10+ TCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA
____________________________________________________________
consensus GCTAAAGCTTCGACAAGCATCAGTGCATCACGCCTCCTTCCTCTCCCTCTCTCTACAGAA

. : . : . : . : . : . :
JMSF004L19+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
JMSF018E21+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
JMSF001N22+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
JMSF019C01+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
JMSF047F05+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
JMFN042G21+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
JMFS078G10+ TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG
____________________________________________________________
consensus TCTTCGCTAGTTTTTCAACTCTCAGTCGCCGATCGGTCGGAGGGAGAAATGACGATGATG

. : . : . : . : . : . :
JMSF004L19+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
JMSF018E21+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
JMSF001N22+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
JMSF019C01+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
JMSF047F05+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
JMFN042G21+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
JMFS078G10+ AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG
____________________________________________________________
consensus AGCGCGAACGACGGTGCGGCCGGTCCGGTGATGCGGCCCAAGACCAAGATTGTCTGCACG

. : . : . : . : . : . :
JMSF004L19+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC
JMSF018E21+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGC
JMSF001N22+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC
JMSF019C01+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC
JMSF047F05+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC
JMFN042G21+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC
JMFS078G10+ CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC
____________________________________________________________
consensus CTGGGGCCGGCGTCCCGGTCGGTGCCGATGGTCGAGAAGCTGCTCCGTGCCGGGATGAAC

. : . : . : . : . : . :
JMSF004L19+ GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGAGACCCTCAACAAT
JMSF001N22+ GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGA
JMSF019C01+ GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGAGACCCTCAACAAT
JMSF047F05+ GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGAGACCCTCAACAAT
JMFN042G21+ GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGAGACCCTCAACAAT
JMFS078G10+ GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGAGACCCTCAACAAT
____________________________________________________________
consensus GTCGCGCGCTTCAACTTTTCTCACGGATCTCACGAGTACCACCAGGAGACCCTCAACAAT

. : . : . : . : . : . :
JMSF004L19+ CTCCGTCAGGGTATGGAGAACACCGGTATTCTTTGCG
JMSF019C01+ CTCCGTCAGGGTATGGAGAACACCGGTATTCTTTGCGCCGTCATGCTTGATACTAAG
JMSF047F05+ CTCCGTCAGGGTATGGAGAACACCGGTATTCTTTGCGCCGTCATGCTTGATACTAAGGGT
JMFN042G21+ CTCCGTCAGGGTATGGAGAACACCGGTATTCTTTGCGCCGTCATGCTTGATACTAAG
JMFS078G10+ CTCCGTCAGGGTATGGAGAACACCGGTATTCTTTGCGCCGTCATGCTTGATACTAAGGGT
____________________________________________________________
consensus CTCCGTCAGGGTATGGAGAACACCGGTATTCTTTGCGCCGTCATGCTTGATACTAAGGGT

. : . : . : . : . : . :
JMSF047F05+ CCAGAAATTCGAACAGGGTTTTTGAAAGACAACAAGCCCATCCAACTAAAACAGGGTCAA
JMFS078G10+ CCAGAAATTCGAACAGGGTTTTTGAAAGACAACAAGCCCATCCAACTAAAACAGGGTCAA
____________________________________________________________
consensus CCAGAAATTCGAACAGGGTTTTTGAAAGACAACAAGCCCATCCAACTAAAACAGGGTCAA

. : . : . : . : . : . :
JMSF047F05+ GAGATTACTATATCCACTGATTACAGCATCAAGGGTGATGAGAATATGATCTGCATGAGC
JMFS078G10+ GAGATTACTATATCCACTGATTACAGCATCAAGGGTGATGAGAATATGATCTGCATGAGC
____________________________________________________________
consensus GAGATTACTATATCCACTGATTACAGCATCAAGGGTGATGAGAATATGATCTGCATGAGC

. : . : . : . : . : . :
JMSF047F05+ TACAAAAAGTTGGCTGAGGATGCCAAGCCTCAAAGTGTTATACTGTGTGCAGATGGCACC
JMFS078G10+ TACAAAAAGTTGGCTGAGGATGCCAAGCCTCAAAGTGTTATACTGTGTGCAGATGGCACC
____________________________________________________________
consensus TACAAAAAGTTGGCTGAGGATGCCAAGCCTCAAAGTGTTATACTGTGTGCAGATGGCACC

. : . : . : . : . : . :
JMSF047F05+ ATATCCTTTACTGTTTTGTCATGCGATAAAGAGAACGGTCTTGTTAGATGCCGATGTGAG
JMFS078G10+ ATATCCTTTACTGTTTTGTCATGCGATAAAGAGAACGGTCTTGTTAGATGCCGATGTGAG
____________________________________________________________
consensus ATATCCTTTACTGTTTTGTCATGCGATAAAGAGAACGGTCTTGTTAGATGCCGATGTGAG

. : . : . : . : . : . :
JMSF047F05+ AACACTGCTGTTCTTGGTGAGAGAAAGAATGTCAATCTCCCTGGGGTTATTGTGGATCTT
JMFS078G10+ AACACTGCTGTTCTTGGTGAGAGAA
____________________________________________________________
consensus AACACTGCTGTTCTTGGTGAGAGAAAGAATGTCAATCTCCCTGGGGTTATTGTGGATCTT

. : . : . : . : . : . :
JMSF047F05+ CCAACCTTGACAGATAAAGACAAGGATGACATCTTAAACTGGGGGGTACCTAACCAAATT
____________________________________________________________
consensus CCAACCTTGACAGATAAAGACAAGGATGACATCTTAAACTGGGGGGTACCTAACCAAATT

. : . : . : . : . : . :
JMSF047F05+ GACATGAT
____________________________________________________________
consensus GACATGAT