Alignment Contig 13122

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFS068A12+ TAGTCTCGAGTTTTTTTTTTTTTTTTTTTGCGGAATATAAGAGCCTTCATATGTAAATAC
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consensus TAGTCTCGAGTTTTTTTTTTTTTTTTTTTGCGGAATATAAGAGCCTTCATATGTAAATAC

. : . : . : . : . : . :
JMFS068A12+ CATTTTACACCTCAAAATCGTTGTCAGTACTGGAGATTTACCTATATTACTACAACTAAG
rJMSF017L13+ AAATCGTTGTCAGTACTTGAGATTTACCTATATTACTACAACTAAG
rJMSF048K14+ AAATCGTTGTCAGTACTTGAGATTTACCTATATTACTACAACTAAG
rJMSF028K16+ AAATCGTTGTCAGTACTTGAGATTTACCTATATTACTATAACTAAG
rJMSF020B14+ AAATCGTTGTCAGTACTTGAGATTTACCTATATTACTACAACTAAG
rJMSF040P17+ AAATCGTTGTCAGTACTTGAGATTTACCTATATTACTACAACTAAG
rJMSF027D16+ AAATCGTTGTCAGTACTTGAGATTTACCTAT--TACTACAACTAAG
rJMSF052H02+ TACTTGAGATTTACCTATATTACTACAACTAAG
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consensus CATTTTACACCTCAAAATCGTTGTCAGTACTTGAGATTTACCTATATTACTACAACTAAG

. : . : . : . : . : . :
JMFS068A12+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF017L13+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF048K14+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF028K16+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF020B14+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF040P17+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF027D16+ -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA
rJMSF052H02+ GTAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGNTTA
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consensus -TAATAATAATGTTACTATCTGACAATAACAAAAATGAGATGGGAGCTTATATCAGTTTA

. : . : . : . : . : . :
JMFS068A12+ TAATGGGCTGAGCTAAATTACTAGATTCACTC
rJMSF017L13+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
rJMSF048K14+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
rJMSF028K16+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
rJMSF014D22+ AGATTCACTCTCCAATTTNNTGGAAATCTCCTCAGGCA
rJMSF020B14+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
rJMSF040P17+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
rJMSF027D16+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
rJMSF052H02+ TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA
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consensus TAATGGGCTGAGCTAAATTACTAGATTCACTCTCCAATTTCATGGAAATCTCCTCAGGCA

. : . : . : . : . : . :
rJMSF017L13+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
rJMSF048K14+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
rJMSF028K16+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
rJMSF014D22+ CTGGTATATTANGGTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCGAACG
rJMSF020B14+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
rJMSF040P17+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
rJMSF027D16+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
rJMSF052H02+ CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG
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consensus CTGGTATATTAAGTTCCGAGCAAACCAGCTGAATTATTTTTGCAGTCACGCCCCCAAACG

. : . : . : . : . : . :
rJMSF017L13+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
rJMSF048K14+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
rJMSF028K16+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
rJMSF014D22+ ACNACTTGTTNAGTGTTATTGCAATAGCNAACCTATTCTTCATG
rJMSF020B14+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
rJMSF040P17+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
rJMSF027D16+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
rJMSF052H02+ ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG
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consensus ACAACTTGTTTAGTGTTATTGCAATAGCAAACCTATTCTTCATGTCGCAAAAGCCTGTGG

. : . : . : . : . : . :
rJMSF017L13+ ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT
rJMSF048K14+ ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT
rJMSF028K16+ ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT
rJMSF020B14+ ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT
rJMSF040P17+ ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT
rJMSF027D16+ ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT
rJMSF052H02+ ATCCACCCATGCCGGAATGACCNAACCCTATNAGGCCGGAGTCCTTTGAGTGTATCCTTT
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consensus ATCCACCCATGCCGGAATGACCAAACCCTATAAGGCCGGAGTCCTTTGAGTGTATCCTTT

. : . : . : . : . : . :
rJMSF017L13+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
rJMSF048K14+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
rJMSF028K16+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
rJMSF020B14+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
rJMSF040P17+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
rJMSF027D16+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
rJMSF052H02+ TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA
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consensus TGAAACCGAGCCCAAACTGCCCATCCGGATAGGTCAGCTTCTCATATTCTCCAACGCCCA

. : . : . : . : . : . :
rJMSF017L13+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
rJMSF048K14+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
rJMSF028K16+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
rJMSF020B14+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
rJMSF040P17+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
rJMSF027D16+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
rJMSF052H02+ AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG
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consensus AAAATGCTTCGTGGATTTTTGGGTTTTTGAAAAGTTTGGCATTGTGGCTGTCAGTTGGAG

. : . : . : . : . : . :
rJMSF017L13+ TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
rJMSF048K14+ TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
rJMSF028K16+ TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
rJMSF020B14+ TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
rJMSF040P17+ TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
rJMSF027D16+ TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
rJMSF052H02+ TGNCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT
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consensus TGTCGTCATCATTGACAACCAATACGTACTCGTTACCACTAGCATTTCTGCTAGAACCAT

. : . : . : . : . : . :
rJMSF017L13+ CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
rJMSF048K14+ CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
rJMSF028K16+ CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
rJMSF020B14+ CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
rJMSF040P17+ CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
rJMSF027D16+ CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
rJMSF052H02+ CNTCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT
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consensus CATCGCTATCAGAGCTATCACCGCTTTCTGAATCAGCCTTCCTCCATCTAGCTAATAGCT

. : . : . : . : . : . :
rJMSF017L13+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
rJMSF048K14+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
rJMSF028K16+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
rJMSF020B14+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
rJMSF040P17+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
rJMSF027D16+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
rJMSF052H02+ TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG
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consensus TTTTTTTGGGGGTCTTCGGAGAAGGGAATTTAGGAACGTGTCGGTGGCTTCCCAGTGGTG

. : . : . : . : . : . :
rJMSF017L13+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
rJMSF048K14+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
rJMSF028K16+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
rJMSF020B14+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
rJMSF040P17+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
rJMSF027D16+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
rJMSF052H02+ GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC
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consensus GCATGGAAGAAGACGACAGTGGGGGAATTTTACCACCATCAACAAGCGCTGCATAGTAGC

. : . : . : . : . : . :
rJMSF017L13+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGTATAAT
rJMSF048K14+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGG
rJMSF028K16+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGT
rJMSF020B14+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGTATAATGGC
rJMSF040P17+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGTATAATGGCACGGCGAGTAG
rJMSF027D16+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGTATAATGGCACGGCGAGTAG
rJMSF052H02+ GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGTATAATGGCACGGCGAGTAG
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consensus GAGCAAGTGCACGAGCTGAGCAATGTCCATTGGCAGCAGGTATAATGGCACGGCGAGTAG

. : . : . : . : . : . :
rJMSF040P17+ TGAGTGCATTAAA
rJMSF027D16+ TGAGTGCATTAAACATGATAGGAAGGGTANCTGCAGA
rJMSF052H02+ NGAGTGCATTAAACATGATAGG
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consensus TGAGTGCATTAAACATGATAGGAAGGGTANCTGCAGA