Alignment Contig 1300

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF011A08+ AATCATTGGTTGGTTGGTAGTGCTTGTATTATCTACCCAACTTGCACAGGAAATCCCATA
rJMSF019G23+ ACTTGCACAGGAAATCCCATA
____________________________________________________________
consensus AATCATTGGTTGGTTGGTAGTGCTTGTATTATCTACCCAACTTGCACAGGAAATCCCATA

. : . : . : . : . : . :
rJMSF011A08+ ATTTCATCGACATTATTTTGTACAGGTCATGTTGCAACGAATTCACTACAGCTGTCCCGC
rJMSF019G23+ ATTTCATCGACATTATTTTGTACAGGTCATGTTGCAACGAATTCACTACAGCTGTCCCGC
rJMFF026A20+ TATTTTGTACAGGTCGTGTTGCAACGAATTCACTACAGCTGTCCCGC
rJMFF028P22+ TATTTTGTACAGGTCATGTTGCAACGAATTCACTACAGCTGTCCCGC
____________________________________________________________
consensus ATTTCATCGACATTATTTTGTACAGGTCATGTTGCAACGAATTCACTACAGCTGTCCCGC

. : . : . : . : . : . :
rJMSF011A08+ TATGTACTACCGAATGAAAGAAAGCTAAAGGCAACAACAAAGAAACAAGAGAATCATATA
rJMSF019G23+ TATGTACTACCGAATGAAAGAAAGCTAAAGGCAACAACAAAGAAACAAGAGAATCATATA
rJMFF026A20+ TATGTACTACCGAATGAAAGAAAGCTAAAGGCAACAACAAAGAAACAAGAGAATCATATA
rJMFF028P22+ TATGTACTACCGAATGAAAGAAAGCTAAAGGCAACAACAAAGAAACAAGAGAATCATATA
____________________________________________________________
consensus TATGTACTACCGAATGAAAGAAAGCTAAAGGCAACAACAAAGAAACAAGAGAATCATATA

. : . : . : . : . : . :
rJMSF011A08+ ATCCAAATCAACAAGAGGACAAGTATGTCGCGACACCTTTCACAGTTACACTAGTAAGAA
rJMSF019G23+ ATCCAAATCAACAAGAGGACAAGTATGTCGCGACACCTTTCACAGTTACACTAGTAAGAA
rJMFF026A20+ ATCCAAATCAACAAGAGGACAAGTATGTCGCGACACCTTTCACAGTTACACTAGTAAGAA
rJMFF028P22+ ATCCAAATCAACAAGAGGACAAGTATGTCGCGACACCTTTCACAGTTACACTAGTAAGAA
____________________________________________________________
consensus ATCCAAATCAACAAGAGGACAAGTATGTCGCGACACCTTTCACAGTTACACTAGTAAGAA

. : . : . : . : . : . :
rJMSF011A08+ ACAGTAATATGTCACGATTAGACAATTAACTCCTAAGGTAGACATACCTTTAATCTCTTG
rJMSF019G23+ ACAGTAATATGTCACGATTAGACAATTAACTCCTAAGGTAGACATACCTTTAATCTCTTG
rJMFF026A20+ ACAGTAATATGTCACGATTAGACAATTAACTCCTAAGGTAGACATACCTTTAATCTCTTG
rJMFF028P22+ ACAGTAATATGTCACGATTAGACAATTAACTCCTAAGGTAGACATACCTTTAATCTCTTG
____________________________________________________________
consensus ACAGTAATATGTCACGATTAGACAATTAACTCCTAAGGTAGACATACCTTTAATCTCTTG

. : . : . : . : . : . :
rJMSF011A08+ AAGATCGAGGAAACCGATTATGGGATGTGTGTAAATGCATTAGTGTTCAGTTGGCACCGG
rJMSF019G23+ AAGATCGAGGAAACCGATTATGGGATGTGTGTAAATGCATTAGTGTTCAGTTGGCACCGG
rJMFF026A20+ AAGATCGAGGAAACCGATTATGGGATGTGTGTAAATGCATTAGTGTTCAGTTGGCACCGG
rJMFF028P22+ AAGATCGAGGAAACCGATTATGGGATGTGTGTAAATGCATTAGTGTTCAGTTGGCACCGG
____________________________________________________________
consensus AAGATCGAGGAAACCGATTATGGGATGTGTGTAAATGCATTAGTGTTCAGTTGGCACCGG

. : . : . : . : . : . :
rJMSF011A08+ TAGCCTTTCCAAGGCTTCCAAGATGTACCTCATTGAAGGTCTCCTCTCGGGGCTGCTGTG
rJMSF019G23+ TAGCCTTTCCAAGGCTTCCAAGATGTACCTCATTGAAGGTCTCCTCTCGGGGCTGCTGTG
rJMFF026A20+ TAGCCTTTCCAAGGCTTCCAAGATGTACCTCATTGAAGGTCTCCTCTCGGGGCTGCTGTG
rJMFF028P22+ TAGCCTTTCCAAGGCTTCCAAGATGTACCTCATTGAAGGTCTCCTCTCGGGGCTGCTGTG
____________________________________________________________
consensus TAGCCTTTCCAAGGCTTCCAAGATGTACCTCATTGAAGGTCTCCTCTCGGGGCTGCTGTG

. : . : . : . : . : . :
rJMSF011A08+ CACACACGCCATTGCGATATTTAGAATTGCTATCATCTCCTCTTCTTTATCTGCATCTTC
rJMSF019G23+ CACACACGCCATTGCGATATTTAGAATTGCTATCATCTCCTCTTCTTTATCTGCATCTTC
rJMFF026A20+ CACACACGCCATTGCGATATTTAGAATTGCTATCATCTCCTCTTCTTT--CTGCATCTTC
rJMFF028P22+ CACACACGCCATTGCGATATTTAGAATTGCTATCATCTCCTCTTCTTT--CTGCATCTTC
____________________________________________________________
consensus CACACACGCCATTGCGATATTTAGAATTGCTATCATCTCCTCTTCTTTATCTGCATCTTC

. : . : . : . : . : . :
rJMSF011A08+ GGCTAGATATGGATCCAACACGTCTGAAAGTGGCTTCTTCTCGTCGATGCACAGGTGAAG
rJMSF019G23+ GGCTAGATATGGATCCAACACGTCTGAAAGTGGCTTCTTCTCGTCGATGCACAGGTGAAG
rJMFF026A20+ GGCTAGATATGGATCCAACACGTCTGAAAGTGGCTTCTTCTCGTCGATGCACAGGTGAAG
rJMFF028P22+ GGCTAGATATGGATCCAACACGTCTGAAAGTGGCTTCTTCTCGTCGATGCACAGGTGAAG
____________________________________________________________
consensus GGCTAGATATGGATCCAACACGTCTGAAAGTGGCTTCTTCTCGTCGATGCACAGGTGAAG

. : . : . : . : . : . :
rJMSF011A08+ CCAGTTAACTATATCCATTTCGGTGGAGCCCACGTGGACTATTGGAGACCTTCCCGTGAT
rJMSF019G23+ CCAGTTAACTATATCCATTTCGGTGGAGCCCACGTGGACTATTGGAGACCTTCCCGTGAT
rJMFF026A20+ CCAGTTAACTATATCCATTTCGGTGGAGCCCACGTGGACTATTGGAGACCTTCCCGTGAT
rJMFF028P22+ CCAGTTAACTATATCCATTTCGGTGGAGCCCACGTGGACTATTGGAGACCTTCCCGTGAT
____________________________________________________________
consensus CCAGTTAACTATATCCATTTCGGTGGAGCCCACGTGGACTATTGGAGACCTTCCCGTGAT

. : . : . : . : . : . :
rJMSF011A08+ CATTTCCAACAAGATCACTCCATACGAGTAAATATCCCATTTTTGAGATGGCTTCAACGC
rJMSF019G23+ CATTTCCAACAAGATCACTCCATACGAGTAAATATCCCATTTTTGAGATGGCTTCAACGC
rJMFF026A20+ CATTTCCAACAAGATCACTCCATACGAGTAAATATCCCATTTTTGAGATGGCTTCAACGC
rJMFF028P22+ CATTTCCAACAAGATCACTCCATACGAGTAAATATCCCATTTTTGAGATGGCTTCAACGC
____________________________________________________________
consensus CATTTCCAACAAGATCACTCCATACGAGTAAATATCCCATTTTTGAGATGGCTTCAACGC

. : . : . : . : . : . :
rJMSF011A08+ TTTCTGCGACTCTGGAGCTTGGTAACACGACTCTAAAGTTGCTGCAGTTGAAGCAATGGT
rJMSF019G23+ TTTCTGCGACTCTGGAGCTTGGTAACACGACTCTAAAGTTGCTGCAGTTGAAGCAATGGT
rJMFF026A20+ TTTCTGCGACTCTGGAGCTTGGTAACACGACTCTAAAGTTGCTGCAGTTGAAGCAATGGT
rJMFF028P22+ TTTCTGCGACTCTGGAGCTTGGTAACACGACTCTAAAGTTGCTGCAGTTGAAGCAATGGT
____________________________________________________________
consensus TTTCTGCGACTCTGGAGCTTGGTAACACGACTCTAAAGTTGCTGCAGTTGAAGCAATGGT

. : . : . : . : . : . :
rJMSF011A08+ CGATGTTTCAGTTGAGGCCATTC
rJMSF019G23+ CGATGTTTCAGTTGAGGCCATTCGAT
rJMFF026A20+ CGATGTTTCAGTTGAGGCCATTCNATTGGATANAAGCGGTGGGGTGCCTCCGGCTATATT
rJMFF028P22+ CGATGTTTCAGTTGAGGCCATTCGAT
____________________________________________________________
consensus CGATGTTTCAGTTGAGGCCATTCGATTGGATANAAGCGGTGGGGTGCCTCCGGCTATATT