Alignment Contig 1294

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF009E02+ AACTTCTTGTGTGTGTGTATATGCCATGNAAGCAGCTACAAATAGTTGGAATTTATGTTC
rJMSF001K20+ AATAGTTGGAATTTATGTTC
rJMFF035B02+ CTTCTTGTGTGTGTGTATATGCCATG-AAGCAGCTACAAATAGTTGGAATTTATGTTC
rJMFF004E14+ TTTATGTTC
____________________________________________________________
consensus AACTTCTTGTGTGTGTGTATATGCCATGNAAGCAGCTACAAATAGTTGGAATTTATGTTC

. : . : . : . : . : . :
rJMSF009E02+ ACTTGAAGCCACTTATCCTCCAAGTTTACAACATGAGTACAAGTTTATTGCCTGATAATA
rJMSF001K20+ ACTTGAAGCCACTTATCCTCCAAGTTTACAACATGAGTACAAGTTTATTGCCTGATAATA
rJMFF035B02+ ACTTGAAGCCACTTATCCTCCAAGTTTACAACATGAGTACAAGTTTATTGCCTGATAATA
rJMFF004E14+ ACTTGAAGCCACTTATCCTCCAAGTTTACAACATGAGTACAAGTTTATTGCCTGATAATA
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consensus ACTTGAAGCCACTTATCCTCCAAGTTTACAACATGAGTACAAGTTTATTGCCTGATAATA

. : . : . : . : . : . :
rJMSF009E02+ TACTATGAATAGGTTCTCTAGCAACAGATGTATTCAGTTATTCTCCAGAATAACAAACCA
rJMSF001K20+ TACTATGAATAGGTTCTCTAGCAACAGATGTATTCAGTTATTCTCCAGAATAACAAACCA
rJMFF035B02+ TACTATGAATAGGTTCTCTAGCAACAGATGTATTCAGTTATTCTCCAGAATAACAAACCA
rJMFF004E14+ TACTATGAATAGGTTCTCTAGCAACAGATGTATTCAGTTATTCTCCAGAATAACAAACCA
____________________________________________________________
consensus TACTATGAATAGGTTCTCTAGCAACAGATGTATTCAGTTATTCTCCAGAATAACAAACCA

. : . : . : . : . : . :
rJMSF009E02+ CTATACCATTAGAGTTTTGCTCGTACCTTTTCGATCAGTTCCCGTCTAAGAATCTTCCCC
rJMSF001K20+ CTATACCATTAGAGTTTTGCTCGTACCTTTTCGATCAGTTCCCGTCTAAGAATCTTCCCC
rJMFF035B02+ CTATACCATTAGAGTTTTGCTCGTACCTTTTCGATCAGTTCCCGTCTAAGAATCTTCCCC
rJMFF004E14+ CTATACCATTAGAGTTTTGCTCGTACCTTTTCGATCAGTTCCCGTCTAAGAATCTTCCCC
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consensus CTATACCATTAGAGTTTTGCTCGTACCTTTTCGATCAGTTCCCGTCTAAGAATCTTCCCC

. : . : . : . : . : . :
rJMSF009E02+ GAGGCANATTTTGGGACGCTGTTTATAAACGTCACCTTGCGCAATCTCTTATATGGCGCA
rJMSF001K20+ GAGGCAGATTTTGGGACGCTGTTTATAAACGTCACCTTGCGCAATCTCTTATATGGCGCA
rJMFF035B02+ GAGGCAGATTTTGGGACGCTGTTTATAAACGTCACCTTGCGCAATCTCTTATATGGCGCA
rJMFF004E14+ GAGGCAGATTTTGGGACGCTGTTTATAAACGTCACCTTGCGCAATCTCTTATATGGCGCA
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consensus GAGGCAGATTTTGGGACGCTGTTTATAAACGTCACCTTGCGCAATCTCTTATATGGCGCA

. : . : . : . : . : . :
rJMSF009E02+ ACCTGGCCTGCAATGAACTTCTTGACATCTTCTTCAGTCANAGAGCTGTTCGGGGAGCGA
rJMSF001K20+ ACCTGGCCTGCAATGAACTTCTTGACATCTTCTTCAGTCAGAGAGCTGTTCGGGGAGCGA
rJMFF035B02+ ACCTGGCCTGCAATGAACTTCTTGACATCTTCTTCAGTCAGAGAGCTGTTCGGGGAGCGA
rJMFF004E14+ ACCTGGCCTGCAATGAACTTCTTGACATCTTCTTCAGTCAGAGAGCTGTTCGGGGAGCGA
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consensus ACCTGGCCTGCAATGAACTTCTTGACATCTTCTTCAGTCAGAGAGCTGTTCGGGGAGCGA

. : . : . : . : . : . :
rJMSF009E02+ ACAACATATGCAACTGGGACCTCACCAGCTTCTGCATCCGGGTATGGGATGACAACAGCA
rJMSF001K20+ ACAACATATGCAACTGGGACCTCACCAGCTTCTGCATCCGGGTATGGGATGACAACAGCA
rJMFF035B02+ ACAACATATGCAACTGGGACCTCACCAGCTTCTGCATCCGGGTATGGGATGACAACAGCA
rJMFF004E14+ ACAACATATGCAACTGGGACCTCACCAGCTTCTGCATCCGGGTATGGGATGACAACAGCA
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consensus ACAACATATGCAACTGGGACCTCACCAGCTTCTGCATCCGGGTATGGGATGACAACAGCA

. : . : . : . : . : . :
rJMSF009E02+ TCCTGTATTTCTGGATGAGAAACGAGCAGACCTTCGAGCTCTGCTGGTGCGACCTGATAA
rJMSF001K20+ TCCTGTATTTCTGGATGAGAAACGAGCAGACCTTCGAGCTCTGCTGGTGCGACCTGATAA
rJMFF035B02+ TCCTGTATTTCTGGATGAGAAACGAGCAGACCTTCGAGCTCTGCTGGTGCGACCTGATAA
rJMFF004E14+ TCCTGTATTTCTGGATGAGAAACGAGCAGACCTTCGAGCTCTGCTGGTGCGACCTGATAA
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consensus TCCTGTATTTCTGGATGAGAAACGAGCAGACCTTCGAGCTCTGCTGGTGCGACCTGATAA

. : . : . : . : . : . :
rJMSF009E02+ CCTTTGTACTTAATCAGCTCCTTGATACGGTCAACAACATATAGCATTCCATCCTTGTTA
rJMSF001K20+ CCTTTGTACTTAATCAGCTCCTTGATACGGTCAACAACATATAGCATTCCATCCTTGTTA
rJMFF035B02+ CCTTTGTACTTAATCAGCTCCTTGATACGGTCAACAACATATAGCATTCCATCCTTGTTA
rJMFF004E14+ CCTTTGTACTTAATCAGCTCCTTGATACGGTCAACAACATATAGCATTCCATCCTTGTTA
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consensus CCTTTGTACTTAATCAGCTCCTTGATACGGTCAACAACATATAGCATTCCATCCTTGTTA

. : . : . : . : . : . :
rJMSF009E02+ AAGTATCCAAGATCTCCAGTATGGACCCAGCCTTGCTTATCTATTGTAAGCTTTGTAGCC
rJMSF001K20+ AAGTATCCAAGATCTCCAGTATGGACCCAGCCTTGCTTATCTATTGTAAGCTTTGTAGCC
rJMFF035B02+ AAGTATCCAAGATCTCCAGTATGGACCCAGCCTTGCTTATCTATTGTAAGCTTTGTAGCC
rJMFF004E14+ AAGTATCCAAGATCTCCAGTATGGACCCAGCCTTGCTTATCTATTGTAAGCTTTGTAGCC
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consensus AAGTATCCAAGATCTCCAGTATGGACCCAGCCTTGCTTATCTATTGTAAGCTTTGTAGCC

. : . : . : . : . : . :
rJMSF009E02+ TGTGGATTCTTGTAATAACCTTGCATCATGTTAGGACCTCGTACCCAAATCTCCCCCAAC
rJMSF001K20+ TGTGGATTCTTGTAATAACCTTGCATCATGTTAGGACCTCGTACCCAAATCTCCCCCAAC
rJMFF035B02+ TGTGGATTCTTGTAATAACCTTGCATCATGTTAGGACCTCGTACCCAAATCTCCCCCAAC
rJMFF004E14+ TGTGGATTCTTGTAATAACCTTGCATCATGTTAGGACCTCGTACCCAAATCTCCCCCAAC
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consensus TGTGGATTCTTGTAATAACCTTGCATCATGTTAGGACCTCGTACCCAAATCTCCCCCAAC

. : . : . : . : . : . :
rJMSF009E02+ TGACCAGGAGGAAGATGCTGCAGTTTATCAACACTAACGATTTGCGCCTCCACTGCTGAA
rJMSF001K20+ TGACCAGGAGGAAGATGCTGCAGTTTATCAACACTAACGATTTGCGCCTCCACTGCTGAA
rJMFF035B02+ TGACCAGGAGGAAGATGCTGCAGTTTATCAACACTAACGATTTGCGCCTCCACTGCTGAA
rJMFF004E14+ TGACCAGGAGGAAGATGCTGCAGTTTATCAACACTAACGATTTGCGCCTCCACTGCTGAA
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consensus TGACCAGGAGGAAGATGCTGCAGTTTATCAACACTAACGATTTGCGCCTCCACTGCTGAA

. : . : . : . : . : . :
rJMSF009E02+ ACCAGCAATCCAGCTGACCCGGAGTGTCTTGG
rJMSF001K20+ ACCAGCAATCCAGCTGACCCGGA
rJMFF035B02+ ACCAGCAATCC
rJMFF004E14+ ACCAGCAATCCAGCTGACCCGGAGTGTCTTGGACCAATTCTTGTATTCTCTATACACACA
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consensus ACCAGCAATCCAGCTGACCCGGAGTGTCTTGGACCAATTCTTGTATTCTCTATACACACA

. : . : . : . : . : . :
rJMFF004E14+ ACTCCACAAGTTTCTGTCATGCCATATCCCTGAATTACAGTAGCCTGANGGAAATTCTTG
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consensus ACTCCACAAGTTTCTGTCATGCCATATCCCTGAATTACAGTAGCCTGANGGAAATTCTTG

. : . : . : . : . : . :
rJMFF004E14+ GCACACTCTTNCATCA
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consensus GCACACTCTTNCATCA