Alignment Contig 12913

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF031A09+ AGAGCATACTCATCAGTAGGCAGTAGCAGTAGCAAATTAGCAATTGCATTTGGCAACAGA
JMSF042J16+ AGCAGTAGCAAATTAGCAATTGCATTTGGCAACAGA
JMSF012L13+ AGCAGTAGCAAATTAGCAATTGCATTTGGCAACAGA
JMFS155B07+ TTTGGCAACAGA
JMFF044J21+ AGCAATTGCATTTGGCAACAGA
JMSF047J13+ CAATTGCATTTGGCAACAGA
JMSF051A03+ AGCAGTAGCAAATTAGCAATTGCATTTGGCAACAGA
____________________________________________________________
consensus AGAGCATACTCATCAGTAGGCAGTAGCAGTAGCAAATTAGCAATTGCATTTGGCAACAGA

. : . : . : . : . : . :
JMFF031A09+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMSF042J16+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMSF012L13+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMFS155B07+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMFF044J21+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMSF047J13+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMSF051A03+ TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
JMSF045N24+ GACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT
____________________________________________________________
consensus TATGACTTTTGACGTGTCCCTTTACCGGAGATTGTAGAACAGCAGAGCCGACGACGATGT

. : . : . : . : . : . :
JMFF031A09+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
JMSF042J16+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
JMSF012L13+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
JMFS155B07+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
JMFF044J21+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
JMSF047J13+ CATGCCATACGTAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
JMSF051A03+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATTTACCCAAATCCTCTCCTCTCT
JMSF045N24+ CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT
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consensus CATGCCATACGCAATCTCTCACCGTTTCTTTCCTTTATGTACCCAAATCCTCTCCTCTCT

. : . : . : . : . : . :
JMFF031A09+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMSF042J16+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMSF012L13+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMFS155B07+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMSF003C05+ CTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMFF044J21+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMSF047J13+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMSF051A03+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
JMSF045N24+ GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC
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consensus GCGTATCCCTAAACCTCCGATAATGATAATGGATCCTCACGGAACGATTGTGTTCTCCAC

. : . : . : . : . : . :
JMFF031A09+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMSF042J16+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMSF012L13+ CGTCGGCAGATCTCACTAC
JMFS155B07+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMSF003C05+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMFF044J21+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMSF047J13+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMSF051A03+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
JMSF045N24+ CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA
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consensus CGTCGGCAGATCTCACTACGGCTTCGATATCTTCTCCGTTCAACTTCCGTCTAGTTTCGA

. : . : . : . : . : . :
JMFF031A09+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMSF042J16+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMFS155B07+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMSF003C05+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMFF044J21+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMSF047J13+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMSF051A03+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
JMSF045N24+ ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA
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consensus ACAGGACCGCCGCCCCGCCTCCGAGCACCGCCTCACCGACGGCGTCTCCATTAACTTCAA

. : . : . : . : . : . :
JMFF031A09+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMSF042J16+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMFS155B07+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMSF003C05+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMFF044J21+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMSF047J13+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMSF051A03+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
JMSF045N24+ CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC
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consensus CGGCCACTTTCTCGATGAAGGCGACACCTTTGTCTTTGTCTCCGAGAGATCCGGGTCGCC

. : . : . : . : . : . :
JMFF031A09+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
JMSF042J16+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
JMFS155B07+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
JMSF003C05+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
JMFF044J21+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCCGCAGTTACTCTC
JMSF047J13+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
JMSF051A03+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
JMSF045N24+ TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC
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consensus TCGGATTTACTTGCAAGAGAATCGCTCCGCCTCCGCCGGAAAACCGCAGCAGTTACTCTC

. : . : . : . : . : . :
JMFF031A09+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMSF042J16+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMFS155B07+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMSF003C05+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMFF044J21+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMSF047J13+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMSF051A03+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
JMSF045N24+ CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT
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consensus CCCCTCTGGAACCCTCTTTCATGACCGTCCGGTCGTCAGAGATGGACGGCTGCTTTATAT

. : . : . : . : . : . :
JMFF031A09+ CTCTGCTCATGAGCC
JMSF042J16+ CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA
JMFS155B07+ CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA
JMSF003C05+ CTCTGCTCAT
JMFF044J21+ CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA
JMSF047J13+ CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA
JMSF051A03+ CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA
JMSF045N24+ CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA
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consensus CTCTGCTCATGAGCCGCCCAAGGAAGTGTTCAAGAGCTGGTCTGCGCTTTACTCCACCCA

. : . : . : . : . : . :
JMSF042J16+ TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC
JMFS155B07+ TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC
JMFF044J21+ TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC
JMSF047J13+ TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC
JMSF051A03+ TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC
JMSF045N24+ TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC
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consensus TCTAGGTTTAAAGGAAATCACGCGGTTGACGCCGTACGGTGCCGTTGATTTCAGCCCCTC

. : . : . : . : . : . :
JMSF042J16+ CGTTTCTCAGTCCGGCGAATTCATCGCCGTCGCATCTTACGGGTCTCGTCCCTGGGCGGG
JMFS155B07+ CGTTTCTC
JMFF044J21+ CGTTTCTCAGTCCGG
JMSF047J13+ CGTTTCTCAGTCCGGCGAATTCATCGCCGTCGCATCTTACGGGTCTCGTC
JMSF051A03+ CGTTTCTCAGTCCGGCGAATTCATCGCCGTCGCATCTTACGGGTCTCGTC
JMSF045N24+ CGTTTCTCAGTCCGGCGAATTCATCGCCGTCGCATCTTACGGGTCTCGTCCCTGGGCGGG
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consensus CGTTTCTCAGTCCGGCGAATTCATCGCCGTCGCATCTTACGGGTCTCGTCCCTGGGCGGG

. : . : . : . : . : . :
JMSF042J16+ TGAGTTCCGCGATCTCCAAACTGATATCGTCGTGTTCCGGGAGTCCGATCCCGCTAGCCG
JMSF045N24+ TGAGTTCCGCGATCTCCAAACTGATATCGTCGTGTTCCGGGAGTCCGATCCCGCTAGCCG
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consensus TGAGTTCCGCGATCTCCAAACTGATATCGTCGTGTTCCGGGAGTCCGATCCCGCTAGCCG

. : . : . : . : . : . :
JMSF042J16+ AACTCTTCTCTGCAAACACGGTGGTTGGCCTACTTGGTCCGGCGATTCGACTATCTACTT
JMSF045N24+ AACTCTTCTCTGCAAACACGGTGGTTGGCCTACTTGGTCCGGCGATTCGACTATCTACTT
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consensus AACTCTTCTCTGCAAACACGGTGGTTGGCCTACTTGGTCCGGCGATTCGACTATCTACTT

. : . : . : . : . : . :
JMSF042J16+ CCATCGCCAAGCCGACGAC
JMSF045N24+ CCA
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consensus CCATCGCCAAGCCGACGAC