Alignment Contig 1285

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF007N06+ AAGTTTATTTCTTAAAACACACATTCAGACACATGCACAAGAACATATTGAA-AGGAACA
rJMSF004G07+ AAACACACATTCAGACACATGCACAAGAACATACTGAAGAGGAACA
rJMSF032E02+ AGACACATGCACAAGAACATATTGAA-AGGAACA
rJMSF047L13+ AAACACACATTCAGACACATGCACAAGAACATATTGAA-AGGAACA
rJMSF047P23+ AAACACACATTCAGACACATGCACAAGAACATATTGAA-AGGAACA
rJMSF046H11+ GCACAAGAACATATTGAA-AGGAACA
rJMSF014F13+ GAACATATTGAA-AGGAACA
rJMSF027O02+ GAACATATTGAA-AGGAACA
____________________________________________________________
consensus AAGTTTATTTCTTAAAACACACATTCAGACACATGCACAAGAACATATTGAA-AGGAACA

. : . : . : . : . : . :
rJMSF007N06+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
rJMSF004G07+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACNCACNTACATTCTC
rJMSF032E02+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
rJMSF047L13+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
rJMSF047P23+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
rJMSF046H11+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
rJMSF014F13+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
rJMSF027O02+ TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC
____________________________________________________________
consensus TGCCTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTC

. : . : . : . : . : . :
rJMSF007N06+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
rJMSF004G07+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATACACATA
rJMSF032E02+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
rJMSF047L13+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
rJMSF047P23+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
rJMSF046H11+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
rJMSF014F13+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
rJMSF027O02+ CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA
____________________________________________________________
consensus CAAAACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATA

. : . : . : . : . : . :
rJMSF007N06+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF004G07+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF032E02+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF047L13+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF047P23+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF046H11+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF014F13+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
rJMSF027O02+ CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA
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consensus CATACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTA

. : . : . : . : . : . :
rJMSF007N06+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF046H12+ AAA
rJMSF004G07+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF032E02+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF047L13+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF047P23+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF046H11+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF014F13+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
rJMSF027O02+ TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA
____________________________________________________________
consensus TTTTTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAA

. : . : . : . : . : . :
rJMSF007N06+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF046H12+ GTTACGGTTGATGTGGACNTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF004G07+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF032E02+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF047L13+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF047P23+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF046H11+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF014F13+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
rJMSF027O02+ GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC
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consensus GTTACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGGTCAGGATGAAACC

. : . : . : . : . : . :
rJMSF007N06+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
rJMSF046H12+ CTTAGGATTGAAGATTTANCCTTTGGAAAAGTANAATTACNGCTGACNGTNTAGATTCCC
rJMSF004G07+ CTTAAGATTGAAGATTGACCCTTTTG
rJMSF032E02+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
rJMSF047L13+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
rJMSF047P23+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
rJMSF046H11+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
rJMSF014F13+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
rJMSF027O02+ CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC
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consensus CTTAAGATTGAAGATTTAACCTTTTGAAAAGTAAAATTACAGCTGACAGTCTAGATTCCC

. : . : . : . : . : . :
rJMSF007N06+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
rJMSF046H12+ AGTGTGGTTTTTCTTATCTTCTTTCTTTCANTCACATCTCCNTTGTTGGATGAG
rJMSF032E02+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
rJMSF047L13+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
rJMSF047P23+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
rJMSF046H11+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
rJMSF014F13+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
rJMSF027O02+ AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA
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consensus AGT-TGGTTTTTCTTATCTTCTTTCTTTCAGTCACATCTCCTTTTTTGGATGAGTCAAAA

. : . : . : . : . : . :
rJMSF007N06+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
rJMSF032E02+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
rJMSF047L13+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
rJMSF047P23+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
rJMSF046H11+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
rJMSF014F13+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
rJMSF027O02+ GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC
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consensus GAAGACAGTCTTGATCCAAATGTTGAGCTGGCTTGCGTTAACTAGCTCGAACCTAGATCC

. : . : . : . : . : . :
rJMSF007N06+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGCCCAATATTTTGGACC
rJMSF032E02+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC
rJMSF047L13+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC
rJMSF047P23+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC
rJMSF046H11+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC
rJMSF014F13+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC
rJMSF027O02+ AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC
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consensus AATTGTCTCTAGTGGTTCTTCAAATTTAATAGTGTTTAATTTGGTCCAATATTTTGGACC

. : . : . : . : . : . :
rJMSF007N06+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
rJMSF032E02+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
rJMSF047L13+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
rJMSF047P23+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
rJMSF046H11+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
rJMSF014F13+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
rJMSF027O02+ GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG
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consensus GAGAGAAGTCTGTATATTCCTCATTTATGCCTTCCAAGGAGGCATCTATCAGATGGAATG

. : . : . : . : . : . :
rJMSF007N06+ AAGGAATTTTATAATGTTTTGTTCAAAGTCTGGGTAAAGAGAAATTTAAATTGG
rJMSF032E02+ AAGGAATTTTATAATGTTTTGTTCAAAGTCTGGGTAAAGAGA
rJMSF047L13+ AAGGAATTTTATAATGGTTTGTTCAAGGTCTGGGTAAAGAGAAATTTAAATTGGGTTTTC
rJMSF047P23+ AAGGAATTTTATAATGGTTTGTTCAAAGTCTGGGTAA
rJMSF046H11+ AAGGAATTTTATAATGTTTTGTTCAAAGTCTGGGTAAAGAGAAATTTAAATTGGGTTTTC
rJMSF014F13+ AAGGAATTTTATAATGTTTTGTTCAAAGTCTGGGTAAAGAGAAATTTAAATTGGGTTTTC
rJMSF027O02+ AAGGAATTTTATAATGTTTTGTTCAAAGTCTGGGTAAAGAGAAATTTAAATTGGGTTTTC
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consensus AAGGAATTTTATAATGTTTTGTTCAAAGTCTGGGTAAAGAGAAATTTAAATTGGGTTTTC

. : . : . : . : . : . :
rJMSF047L13+ NAAGACAAAA
rJMSF046H11+ AAAGACAAAAATGTCTCAAATGGTGTCTTTCTTGGGGTTTTCAAAGACTAAAATGTCTCA
rJMSF014F13+ AAAGACAAAAATGTCTCAAATGGTGTCTTTCTTGGGTTTTCAA
rJMSF027O02+ AAAGACAAAAATGTCTCAAATGGTGTCTTTCT
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consensus AAAGACAAAAATGTCTCAAATGGTGTCTTTCTTGGGGTTTCAAAAGACTAAAATGTCTCA

. : . : . : . : . : . :
rJMSF046H11+ AATGTTGTCTCAAGTGTAGTAAATGGTCTAAGACCATCCATTTGTTT
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consensus AATGTTGTCTCAAGTGTAGTAAATGGTCTAAGACCATCCATTTGTTT