Alignment Contig 12766

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF048I21+ CGCAGTTCAGAGAGTATCTGCGGGTTCCCAGATATCAATAATACAAATCACAACTCAATT
____________________________________________________________
consensus CGCAGTTCAGAGAGTATCTGCGGGTTCCCAGATATCAATAATACAAATCACAACTCAATT

. : . : . : . : . : . :
rJMSF048I21+ TTGTTAATGATGAAAGTGAAAATGGGATGGGGATGGTTAATATATACTA-TAATTTAATT
rJMFF048K24+ GGGGATGGTTAATATATACTA-TAATTTAATT
rJMSF026M11+ GGGGATGGTTAATATATACTAATAATTTAATT
rJMSF018H13+ ATAATTTAATT
____________________________________________________________
consensus TTGTTAATGATGAAAGTGAAAATGGGATGGGGATGGTTAATATATACTAATAATTTAATT

. : . : . : . : . : . :
rJMSF048I21+ CAACAATGACATAAACTTCGAAAACGGAAATATAACAATAAATGTGCAGTCTAACTATCA
rJMFF048K24+ CAACAATGACATAAACTTCGAAAACGGAAATATAACAATAAATGTGCAGTCTAACTATCA
rJMSF026M11+ CAACAATGACATAAACTTCGAAAACGGAAATATAACAATAAATGTGCAGTCTAACTATCA
rJMSF018H13+ CAACAATGACATAAACTTCGAAAACGGAAATATAACAATAAATGTGCAGTCTAACTATCA
rJMFF015L08+ AACTTCGAAAACGGAAATATAACAATAAATGTGCAGTCTAACTATCA
rJMFF036H11+ AAATATAACAATAAATGTGCAGTCTAACTATCA
____________________________________________________________
consensus CAACAATGACATAAACTTCGAAAACGGAAATATAACAATAAATGTGCAGTCTAACTATCA

. : . : . : . : . : . :
rJMSF048I21+ ACTTTTGCGGGTTAGAGAGTGGCAGAGCATGCACCATATCTATGGTTGGTTGCTAGTTCT
rJMFF048K24+ ACTTTTGCGGGTTAGAGAGTGGCAGAGCATGCACCATATCTATGGTTGGTTGCTAGTTCT
rJMSF026M11+ ACTTTTGCGGGTTANAGAGTGGCAGAGCATGCACCATATCTATGGTTGGNTGCTAGTTCT
rJMSF018H13+ ACTTTTGCGGGTTAGAGAGTGGCAGAGCATGCACCATATCTATGGTTGGTTGCTAGTTCT
rJMFF015L08+ ACTTTTGCGGGTTAGAGAGTGGCAGAGCATGCACCATATCTATGGTTGGTTGCTAGTTCT
rJMFF036H11+ ACTTTTGCGGGTTAGAGAGTGGCAGAGCATGCACCATATCTATGGTTGGTTGCTAGTTCT
____________________________________________________________
consensus ACTTTTGCGGGTTAGAGAGTGGCAGAGCATGCACCATATCTATGGTTGGTTGCTAGTTCT

. : . : . : . : . : . :
rJMSF048I21+ GAGCAGGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAAAATCGGAGCACTTCCATGGA
rJMFF048K24+ GAGCAGGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAACATCGG
rJMSF026M11+ GAGCANGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAACATCGGAGCACTTCCATGGA
rJMSF018H13+ GAGCAGGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAACATCGGAGCACTTCCATGGA
rJMFF015L08+ GAGCAGGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAACATCGGAGCACTTCCATGGA
rJMFF036H11+ GAGCAGGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAACATCGGAGCACTTCCATGGA
____________________________________________________________
consensus GAGCAGGGCCATGGGCTAACCTGGATTGCAGCGCCGTGAACATCGGAGCACTTCCATGGA

. : . : . : . : . : . :
rJMSF048I21+ GGATTTCGAGGCGAGGAGGCGCCATTGAGGTGGATGTTGGAGAGGCAAATATGAGTGAAA
rJMSF026M11+ GGATTTCGAGGCGAGGAGGCGCCATTGAGGTGGATGTTGGAGAGGCAAATATGAGTGAAA
rJMSF018H13+ GGATTTCGAGGCGAGGAGGCGCCATTGAGGTGGATGTTGGAGAGGCAAATATGAGTGAAA
rJMFF015L08+ GGATTTCGAGGCGAGGAGGCGCCATTGAGGTGGATGTTGGAGAGGCAAATATGAGTGAAA
rJMFF036H11+ GGATTTCGAGGCGAGGAGGCGCCATTGAGGTGGATGTTGGAGAGGCAAATATGAGTGAAA
____________________________________________________________
consensus GGATTTCGAGGCGAGGAGGCGCCATTGAGGTGGATGTTGGAGAGGCAAATATGAGTGAAA

. : . : . : . : . : . :
rJMSF048I21+ GGAGATTTCTTGAGACCACGAATGAAACCGGGCTGCGAGACCTTTTTGCCCCACACATCC
rJMSF026M11+ GGAGATTTCTTGANACCACGAATGAAACCGGGCTGCGAGACCTTTTTGCCCCACACATCC
rJMSF018H13+ GGAGATTTCTTGAGACCACGAATGAAACCGGGCTGCGAGACCTTTTTGCCCCACACATCC
rJMFF015L08+ GGAGATTTCTTGAGACCACGAATGAAACCGGGCTGCGAGACCTTTTTGCCCCACACATCC
rJMFF036H11+ GGAGATTTCTTGAGACCACGAATGAAACCGGGCTGCGAGACCTTTTTGCCCCACACATCC
____________________________________________________________
consensus GGAGATTTCTTGAGACCACGAATGAAACCGGGCTGCGAGACCTTTTTGCCCCACACATCC

. : . : . : . : . : . :
rJMSF048I21+ TGGATTTTGATGCCACTGACAATTGGGAGAGCGTTTGGGTTGAATCTGTTGTCGGGATGG
rJMSF026M11+ TGGATTTTGATGCCACTGACAATTGGGAGAGCGTTTGGGTTGAATCTGTTGTCGGGATGG
rJMSF018H13+ TGGATTTTGATGCCACTGACAATTGGGAGAGCGTTTGGGTTGAATCTGTTGTCGGGATGG
rJMFF015L08+ TGGATTTTGATGCCACTGACAATTGGGAGAGCGTTTGGGTTGAATCTGTTGTCGGGATGG
rJMFF036H11+ TGGATTTTGATGCCACTGACAATTGGGAGAGCGTTTGGGTTGAATCTGTTGTCGGGATGG
____________________________________________________________
consensus TGGATTTTGATGCCACTGACAATTGGGAGAGCGTTTGGGTTGAATCTGTTGTCGGGATGG

. : . : . : . : . : . :
rJMSF048I21+ TCCCCGACGTCGCCTGCAATCTTTATCCCCGTTCTTGCGTTTTCCATGTAGACGTTAGAG
rJMSF026M11+ TCCCCGACGTCGCCTGCAATCTTTATCCCCGTTCTTGCGTTTTCCATGTANACGTTAGAG
rJMSF018H13+ TCCCCGACGTCGCCTGCAATCTTTATCCCCGTTCTTGCGTTTTCCATGTAGACGTTAGAG
rJMFF015L08+ TCCCCGACGTCGCCTGCAATCTTTATCCCCGTTCTTGCGTTTTCCATGTAGACGTTAGAG
rJMFF036H11+ TCCCCGACGTCGCCTGCAATCTTTATCCCCGTTCTTGCGTTTTCCATGTAGACGTTAGAG
____________________________________________________________
consensus TCCCCGACGTCGCCTGCAATCTTTATCCCCGTTCTTGCGTTTTCCATGTAGACGTTAGAG

. : . : . : . : . : . :
rJMSF048I21+ ACGGTGATGTTTCTGATGATTCCTCCCCGGCCAATGTTCGTTTTTATATGGATCCCGACG
rJMSF026M11+ ACNGTGATGTTTCTGATGANTCCTCCCCGGCCAATGTTCGTTTTTATATGGATCCCGACG
rJMSF018H13+ ACGGTGATGTTTCTGATGATTCCTCCCCGGCCAATGTTCGTTTTTATATGGATCCCGACG
rJMFF015L08+ ACGGTGATGTTTCTGATGATTCCTCCCCGGCCAATGTTCGTTTTTATATGGATCCCGACG
rJMFF036H11+ ACGGTGATGTTTCTGATGATTCCTCCCCGGCCAATGTTCGTTTTTATATGGATCCCGACG
____________________________________________________________
consensus ACGGTGATGTTTCTGATGATTCCTCCCCGGCCAATGTTCGTTTTTATATGGATCCCGACG

. : . : . : . : . : . :
rJMSF048I21+ CCAATGTTGTACAGGTTTATGTGCTCTGCCAAGACATCTACTATGCCACCCGAGGTTTCG
rJMSF026M11+ CCAATGTTGTACAGGTTTATGTGCTCTGCCAAGACATCTACTATGCCACCCNAGGTTTCG
rJMSF018H13+ CCAATGTTGTACAGGTTTATGTGCTCTGCCAAGACATCTACTATGCCACCCGAGGTTTCG
rJMFF015L08+ CCAATGTTGTACAGGTTTATGTGCTCTGCCAAGACATCTACTATGCCACCCGAGGTTTCG
rJMFF036H11+ CCAATGNTGTACAGGNTTATGNGCTCTGCCAAGANNTCTACTATGCCACCCGAGG
____________________________________________________________
consensus CCAATGTTGTACAGGTTTATGTGCTCTGCCAAGACATCTACTATGCCACCCGAGGTTTCG

. : . : . : . : . : . :
rJMSF048I21+ CTCCCAACTGAAATTCCAGAGAATGGTGATGACCCTGTTACTCGTCGAATGGTAATGCC
rJMSF026M11+ CTCCCAACTGAAATTCCAGAGAATGGTGATGACCCTGTTACTCGTCGAATGNTAATGCCN
rJMSF018H13+ CTCCCAACTGAAATTCCAGAGAATGGTGATGACCCTGTTACTCGNCGAATGNTAATGCCA
rJMFF015L08+ CTCCCAACTGAAATTCCAGAGAATGGTGATGACCCTGTTACTCGTCGAATGGTAATGCCA
____________________________________________________________
consensus CTCCCAACTGAAATTCCAGAGAATGGTGATGACCCTGTTACTCGTCGAATGGTAATGCCA

. : . : . : . : . : . :
rJMSF026M11+ TGNCTAGGCCGCCCATAAGCAATGCCATACTCATCCCACCCGCTCTTCACAGACACGANG
rJMSF018H13+ TGGCTAGGCCGCCCATAAGCAATGCCATACTCATCCCACCCGCTCTTCACAGACACGAGG
rJMFF015L08+ TGGCTAGGCCGCCCATAAGCAATGCCATACTCATCCCACCCGCTCTTCACAGACACGAGG
____________________________________________________________
consensus TGGCTAGGCCGCCCATAAGCAATGCCATACTCATCCCACCCGCTCTTCACAGACACGAGG

. : . : . : . : . : . :
rJMSF026M11+ TCATCCC
rJMSF018H13+ TCATCCC
rJMFF015L08+ TCATCCCCCGTGG
____________________________________________________________
consensus TCATCCCCCGTGG