Alignment Contig 12649

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF027M05+ TAACTTTTCATAGACTATTTTCAAAAGAACATGTCATGTTTTGAACTTGTATGGCTAAAC
rJMSF037N08+ GTATGGCTAAAC
rJMSF022P04+ AACTTTTCATAGACTATTTTCAAGAGAACATGTCATGTTTTGAACTTGTATGGCTAAAC
rJMSF025M15+ AACTTTTCATAGACTATTTTCAAAAGAACATGTCATGTTTTGAACTTGTATGGCTAAAC
rJMSF025A08+ AACTTTTCATAGACTATTTTCAAAAGAACATGTCATGTTTTGAACTTGTATGGCTAAAC
rJMSF043K13+ AAAAGAACATGTCATGTTTTGAACTTGTATGGCTAAAC
____________________________________________________________
consensus TAACTTTTCATAGACTATTTTCAAAAGAACATGTCATGTTTTGAACTTGTATGGCTAAAC

. : . : . : . : . : . :
rJMSF027M05+ TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA
rJMSF037N08+ TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA
rJMSF022P04+ TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA
rJMSF025M15+ TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA
rJMSF025A08+ TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA
rJMSF043K13+ TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA
____________________________________________________________
consensus TCTATATGAACTTTTCATCAGAATTATCATATGTAGCTTGCAAACAATTTTTTTGCCAGA

. : . : . : . : . : . :
rJMSF027M05+ AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG
rJMSF037N08+ AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG
rJMSF022P04+ AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG
rJMSF025M15+ AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG
rJMSF025A08+ AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG
rJMSF043K13+ AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG
____________________________________________________________
consensus AAATACAAGAATGAGGTGCTCTGAAAGTCACTTTTGGTAGTTGTTCCTCTCGTGCTGTCG

. : . : . : . : . : . :
rJMSF027M05+ ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG
rJMSF037N08+ ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG
rJMSF022P04+ ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG
rJMSF025M15+ ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG
rJMSF025A08+ ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG
rJMSF043K13+ ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG
____________________________________________________________
consensus ATAATTTTGAACCACTGGCTTGCAGGGTCACATGAACTGTCATTATTCAAACATTTGCAG

. : . : . : . : . : . :
rJMSF027M05+ GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA
rJMSF037N08+ GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA
rJMSF022P04+ GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA
rJMSF025M15+ GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA
rJMSF025A08+ GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA
rJMSF043K13+ GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA
____________________________________________________________
consensus GTGTTGGTGATGATAACATTGTTGGAATCTACATCCAGGCAGACATTACTGCCATCCTTA

. : . : . : . : . : . :
rJMSF027M05+ AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT
rJMSF037N08+ AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT
rJMSF022P04+ AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT
rJMSF025M15+ AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT
rJMSF025A08+ AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT
rJMSF043K13+ AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT
____________________________________________________________
consensus AGCTTCGATGACAGATGCATCCTAGAATCTGAGATGATTTCCCATTTTGAGCTATCATCT

. : . : . : . : . : . :
rJMSF027M05+ GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA
rJMSF037N08+ GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA
rJMSF022P04+ GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA
rJMSF025M15+ GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA
rJMSF025A08+ GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA
rJMSF043K13+ GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA
____________________________________________________________
consensus GTGCAAAACAGACCAAGCTTTGCTGGCTTCCCGAGCTTTTCTGCCTGAAGGCAAAAGTAA

. : . : . : . : . : . :
rJMSF027M05+ GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT
rJMSF037N08+ GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT
rJMSF022P04+ GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT
rJMSF025M15+ GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT
rJMSF025A08+ GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT
rJMSF043K13+ GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT
____________________________________________________________
consensus GTTCCTTCCACTGTTAATGCTTTACCTGCAGTGTAGCCCCATGGATCTGACTCTGAGCAT

. : . : . : . : . : . :
rJMSF027M05+ GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA
rJMSF037N08+ GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA
rJMSF022P04+ GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA
rJMSF025M15+ GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA
rJMSF025A08+ GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA
rJMSF043K13+ GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA
____________________________________________________________
consensus GGACCTAACTCCAATGGCTGGAAGAGTGAAACTCTTCGAACACAGAGCCCAGTCATTGGA

. : . : . : . : . : . :
rJMSF027M05+ TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC
rJMSF037N08+ TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC
rJMSF022P04+ TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC
rJMSF025M15+ TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC
rJMSF025A08+ TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC
rJMSF043K13+ TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC
____________________________________________________________
consensus TGGAAAATTAGTTTATGTAGTCGAGACTCTGTATAACCTGGTCCTCGAAAGGGTGACTGC

. : . : . : . : . : . :
rJMSF027M05+ ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA
rJMSF037N08+ ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA
rJMSF022P04+ ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA
rJMSF025M15+ ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA
rJMSF025A08+ ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA
rJMSF043K13+ ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA
____________________________________________________________
consensus ATGATAGAGATCCTTTGGAGGAAGCTCAAGTTCCTCGGTTCACACCAATTCCAGGTCAGA

. : . : . : . : . : . :
rJMSF027M05+ ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC
rJMSF037N08+ ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC
rJMSF022P04+ ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC
rJMSF025M15+ ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC
rJMSF025A08+ ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC
rJMSF043K13+ ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC
____________________________________________________________
consensus ACCCCATAAAACTCTTCTAGTCCAACTGTACCTTCTCTCAGATAGTAACTTCCAGCCAGC

. : . : . : . : . : . :
rJMSF027M05+ GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCC
rJMSF037N08+ GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCC
rJMSF022P04+ GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCC
rJMSF025M15+ GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCC
rJMSF025A08+ GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCC
rJMSF043K13+ GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCCAAACCCAAGAAGCAGTTGAAGTAC
____________________________________________________________
consensus GTCCACAGTGCCCAGTCAAAGTCGAGCTCTGCTGCCAAACCCAAGAAGCAGTTGAAGTAC

. : . : . : . : . : . :
rJMSF043K13+ CTATTGTCGTTCACATTGGTACCCCTTAGATCAATACCAAACTCACTGACAAAC
____________________________________________________________
consensus CTATTGTCGTTCACATTGGTACCCCTTAGATCAATACCAAACTCACTGACAAAC