Alignment Contig 12499

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF002F13+ TATATACGTTTCTATCCAACTATGTTATCTGTTCTTTGTTATACTCAAGATATATGATAT
rJMFF046L18+ ACTCAAGATATATGATAT
____________________________________________________________
consensus TATATACGTTTCTATCCAACTATGTTATCTGTTCTTTGTTATACTCAAGATATATGATAT

. : . : . : . : . : . :
rJMSF002F13+ TCTCTGCATTTTAATGTACAAACACTTTTGTCGAATCCATGATAATTTCCACAAAAAAAA
rJMFF046L18+ TCTCTGCATTTTAATGGACAAACACTTTTGTCGAATCCATGATAATTACCACAAAAAAAA
rJMSF034G03+ AACACTTTTGTCGAATCCATGATAATTTCCACAAAAAAAA
rJMSF027P11+ AACACTTTTGTCGAATCCATGATAATTTCCACAAAAAAAA
rJMSF049J21+ AACACTTTTGTCGAATCCATGATAATTTCCACAAAAAAAA
____________________________________________________________
consensus TCTCTGCATTTTAATGGACAAACACTTTTGTCGAATCCATGATAATTTCCACAAAAAAAA

. : . : . : . : . : . :
rJMSF002F13+ ATACTTGTAATAATTACTCAACCAAGATTTTTTCTTTTTTTTT-CCTTGCGTTGATATAG
rJMFF046L18+ ATACTTGTAATAATTACTCAACCAAGATTTTTTCTTTTTTTTTTCCTTGCGTTGATATAG
rJMSF034G03+ ATACTTGTAATAATTACTCAACCAAGATTTTTTCTTTTTTTTTNCCTNGCGTTGATATAN
rJMSF027P11+ ATACTTGTAATAATTACTCAACCAAGATTTTTTCTTTTTTTTTTCCTNGCGTTGATATAN
rJMSF049J21+ ATACTTGTAATAATTACTCAACCAAGATTTTTTCTTTTTTTTTNCCTTGCGTTGATATAN
rJMFF051L08+ TTTTTTTTTTTTTTTTCCTTGCGTTGATATAG
____________________________________________________________
consensus ATACTTGTAATAATTACTCAACCAAGATTTTTTCTTTTTTTTTTCCTTGCGTTGATATAG

. : . : . : . : . : . :
rJMSF002F13+ AAAGATTAATTAAAACTTAAAAATAAAATAAAACTCAACTACTACTCTCTCCTAAGGCAC
rJMFF046L18+ AAAGATTAATTAAAACTTAAAAATAAAATAAAACTCAACTACTACTCTCTCCTAAGGCAC
rJMFF001G20+ CTACTACTCTCTCCTANGGNAC
rJMSF034G03+ AANGATTANTTAAANCTTAAAAATAAAATAAAACTCANCTACTACTCTCNCCTANGGCNC
rJMSF027P11+ AANGATTANTTAAANCTTAAAAATAAAATAAAACTCANCTACTACTCTCNCCTANGGCNC
rJMSF049J21+ AANGATTANTTAAANCTTAAAAATAAAATAAAACTCANCTACTACTCTCNCCTANGGCNC
rJMFF051L08+ AAAGATTAATTAAAACTTAAAAATAAAATAAAACTCAACTACTACTCTCTCCTAAGGCAC
rJMSF014I05+ AAACTCAACTACTACTCTCTCCTAAGGCAC
____________________________________________________________
consensus AAAGATTAATTAAAACTTAAAAATAAAATAAAACTCAACTACTACTCTCTCCTAAGGCAC

. : . : . : . : . : . :
rJMSF002F13+ TATGAANGGCAGGAATTGAATAGCANCCATCATATCTGTAAAAGCCCAAAGAAGTTTGAG
rJMFF046L18+ TATGAATGGCAGGAATTGAATAGCAACCATCATATCTGTAAAAGCCCAAAGAAGTTTGAG
rJMFF001G20+ TATGAATGGCAGGAATTGAATAGCAACCATCATATCTGTANTAGCCCAAAGAAGTTTGAG
rJMSF034G03+ TATGAANGGCAGGAATTGAATANCANCCATCATATCNGTAAAANCCCAAA
rJMSF027P11+ TATGAANGGCAGGANTTGAATANCANCCATCATATCNGTAAAANCCCAAA
rJMSF049J21+ TATGAANGGCAGGANTTGAATANCANCCATCATATCNGTAAAANCCCAAANAANTTTGAN
rJMFF051L08+ TATGAATGGCAGGAATTGAATAGCAACCATCATATCTGTAAAAGCCCAAAGAAGTTTGAG
rJMSF014I05+ TATGAATGGCAGGAATTGAATAGCAACCATCATATCTGTAAAAGCCCAAAGAAGTTTGAG
____________________________________________________________
consensus TATGAATGGCAGGAATTGAATAGCAACCATCATATCTGTAAAAGCCCAAAGAAGTTTGAG

. : . : . : . : . : . :
rJMSF002F13+ AAATGAAAGAACGATGATGATGATGATGATGATTTATGGGGCGCTNGTTTCGGAGGNGGN
rJMFF046L18+ AAATGAAAGAACGATGATGATGATGATGATGATTTATGGGGCGCTTGTTTCGGAGGTGGT
rJMFF001G20+ AAATGAAAGAACGATGATGATGATGATGATGATTTATGGGGCGCTTGTTTCTGAGGNGGT
rJMSF049J21+ AAATGAAA
rJMFF051L08+ AAATGAAAGAACGATGATGATGATGATGATGATTTATGGGGCGCTTGTTTCGGAGGTGGT
rJMSF014I05+ AAATGAAAGAACGATGATGATGATGATGATGATTTATGGGGCGCTTGTTTCGGAGGTGGT
____________________________________________________________
consensus AAATGAAAGAACGATGATGATGATGATGATGATTTATGGGGCGCTTGTTTCGGAGGTGGT

. : . : . : . : . : . :
rJMSF002F13+ GNCTGCTTCGAGCGTTTGATCATCTGAGGAAGGCAGTGCGAGAAAGCGGCGTTTTTGGGC
rJMFF046L18+ GTCTGCTTCAAGCGTTTGATCATCTGAGGAAGGCAGTGCGAGAAAGCGGCGTTTTTGG
rJMFF001G20+ GTCTGCTTCAAGCGTTTGATCATCTGA
rJMFF051L08+ GTCTGCTTCGAGCGTTTGATCATCTGAGGAAGGCAGTGCGAGAAAGCGGCGTTTTTGGGC
rJMSF014I05+ GTCTGCTTCGAGCGTTTGATCATCTGAGGAAGGCAGTGCGAGAAAGCGGCGTTTTTGGGC
____________________________________________________________
consensus GTCTGCTTCGAGCGTTTGATCATCTGAGGAAGGCAGTGCGAGAAAGCGGCGTTTTTGGGC

. : . : . : . : . : . :
rJMSF002F13+ ACGGGGAGGGAGATGCTTAACGNGCTTCCNGGATCGAACAGTCCACGGCAAGAACACGCC
rJMFF051L08+ ACGGGGAGGGAGATGCTTAACGTGCTTCCTGGATCGAACAGTCCACGGCAAGAACACGCC
rJMSF014I05+ ACGGGGAGGGAGATGCTTAACGTGCTTCCTGGATCGAACAGTCCACGGCAAGAACACGCC
____________________________________________________________
consensus ACGGGGAGGGAGATGCTTAACGTGCTTCCTGGATCGAACAGTCCACGGCAAGAACACGCC

. : . : . : . : . : . :
rJMSF002F13+ GGTGCCGCCACGAGGGACGATCTTTCTGGGGCTCANAACCACCGGGTGAACCACCGGGTG
rJMFF051L08+ GGTGCCGCCACGAGGGACGATCTTTCTGGGGCTCAGAACCACCGGGTGAACCACCGGGTG
rJMSF014I05+ GGTGCCGCCACGAGGGACGATCTTTCTGGGGCTCAGAACCACCGGGTGAACCACCGGGTG
____________________________________________________________
consensus GGTGCCGCCACGAGGGACGATCTTTCTGGGGCTCAGAACCACCGGGTGAACCACCGGGTG

. : . : . : . : . : . :
rJMSF002F13+ AACCACCGGAGCCAACATCACCACGGGAGGAGGGCGGATGACGCTCCTGGGGATTATGTC
rJMFF051L08+ AACCACC
rJMSF014I05+ AACCACCGGAGCCAACATCACCACGGGAGGAGGGCGGATGACGCTCCTGGGGATTATGTC
____________________________________________________________
consensus AACCACCGGAGCCAACATCACCACGGGAGGAGGGCGGATGACGCTCCTGGGGATTATGTC

. : . : . : . : . : . :
rJMSF002F13+ CATTGGTCTGTAGTCNGGNGTTCCATTATATGGNGATGAGGGAATCCCAGGTTGCCATAG
rJMSF014I05+ CATTGGTCTGTAGTCTGGTGTTCCATTATATGGTGATGAGGGAATCCCAGGTTGCCATAG
JMFF001G20- GGTCTGTAGTCTGGTGTTCCATTATATGGTGATGAGGGAATCCCAGGTTGCCATAG
____________________________________________________________
consensus CATTGGTCTGTAGTCTGGTGTTCCATTATATGGTGATGAGGGAATCCCAGGTTGCCATAG

. : . : . : . : . : . :
rJMSF002F13+ NGTCATGGCTCTGGT
rJMSF014I05+ TGTCATGGCTCTGGTCAATGGGGGAACAACTTCTGCAGAATTGTTCTCCACACATGTCCT
JMFF001G20- TGTCATGGCTCTGGTCAATGGGGGAACAACTTCTGCAGAATTGTTCTCCACACATGTCCT
____________________________________________________________
consensus TGTCATGGCTCTGGTCAATGGGGGAACAACTTCTGCAGAATTGTTCTCCACACATGTCCT

. : . : . : . : . : . :
rJMSF014I05+ GATTTTGAAGAATGTTATGCTCACTCTTCTGTTGGGAGATGAGCACATTGCATGCCTTGC
JMFF001G20- GATTTTGAAGAATGTTATGCTCACTCTTCTGTTGGGAGATGAGCACATTGCATGCCTTGC
____________________________________________________________
consensus GATTTTGAAGAATGTTATGCTCACTCTTCTGTTGGGAGATGAGCACATTGCATGCCTTGC

. : . : . : . : . : . :
rJMSF014I05+ CATGTCAGCACTGTTTCCCCTCATCACTAAAAGCGACCCTTCCTTAAGAGAGAGTATGAG
JMFF001G20- CATGTCAGCACTGTTTCCCCTCATCACTAAAAGCGACCCTTCCTTAAGAGAGAGTATGAG
____________________________________________________________
consensus CATGTCAGCACTGTTTCCCCTCATCACTAAAAGCGACCCTTCCTTAAGAGAGAGTATGAG

. : . : . : . : . : . :
rJMSF014I05+ TGATCCTCTGTAGTTCCCATCACTGTCACATGCAAGAGTTCTGCCAAAAGCCATTGTTGA
JMFF001G20- TGATCCTCTGTAGTTCCCATCACTGTCACATGCAAGAGTTCTGCCAAAAGCCATTGTTGA
____________________________________________________________
consensus TGATCCTCTGTAGTTCCCATCACTGTCACATGCAAGAGTTCTGCCAAAAGCCATTGTTGA

. : . : . : . : . : . :
rJMSF014I05+ TTCA
JMFF001G20- TTCAGAGAGGAGAAGGGTAGAGACAGGCTGCTCCAAATGAGGTGGTTTCAGAAAAGGTTG
JMSF039I24+ AAGGGTAGAGACAGGTTGGTCCAAATGAGGCGGCTTCAAGAAAGGTTG
____________________________________________________________
consensus TTCAGAGAGGAGAAGGGTAGAGACAGGCTGCTCCAAATGAGGCGGCTTCAAAAAAGGTTG

. : . : . : . : . : . :
JMFF001G20- TGAATATTCCCCCTCATCAAAGAAGTTGATGATACAGCCATTTGGTCTTCGGTTTTCTGA
JMSF039I24+ CGAATACTCCCCCTCGTCGAAGAAGTTAATGATGCAGCCATTTGGTCTCCGATTCTCTGA
____________________________________________________________
consensus CGAATACTCCCCCTCATCAAAGAAGTTAATGATACAGCCATTTGGTCTCCGATTCTCTGA

. : . : . : . : . : . :
JMFF001G20- AATTAAATGCCACTGAATCA
JMSF039I24+ AATCAAATGGCACTGAATCAAGCGACTGATGACACCTTCAAGCAGAGCTGGAATAGCCTC
____________________________________________________________
consensus AATCAAATGCCACTGAATCAAGCGACTGATGACACCTTCAAGCAGAGCTGGAATAGCCTC

. : . : . : . : . : . :
JMSF039I24+ AATCTTCTGACATGTAGGATTGTCTTCTACGTGGCCGAAAATTGGGGCACCGAGTTGAAT
____________________________________________________________
consensus AATCTTCTGACATGTAGGATTGTCTTCTACGTGGCCGAAAATTGGGGCACCGAGTTGAAT

. : . : . : . : . : . :
JMSF039I24+ CATCTCCCGTTTGTTGCCCTTCAGTTGCTGGTTATACAGAACAAAAGTTTCACCTGAGAG
____________________________________________________________
consensus CATCTCCCGTTTGTTGCCCTTCAGTTGCTGGTTATACAGAACAAAAGTTTCACCTGAGAG

. : . : . : . : . : . :
JMSF039I24+ TTCTCCGTTTTGGCCAGCAACTCGGAGTTCATTCACAAACTCATTTAACTCAGAAACTTC
____________________________________________________________
consensus TTCTCCGTTTTGGCCAGCAACTCGGAGTTCATTCACAAACTCATTTAACTCAGAAACTTC

. : . : . : . : . : . :
JMSF039I24+ AGTCGAAGAAAACATATCCTCATACAACTTCAGACCTCTGACAACATTTACCATATGCCC
____________________________________________________________
consensus AGTCGAAGAAAACATATCCTCATACAACTTCAGACCTCTGACAACATTTACCATATGCCC

. : . : . : . : . : . :
JMSF039I24+ TTTGACCGGCTCCCTCGCTGAAAACCCCTTTCTCATCTTGATCTGAGCCCGGTGTGCCTC
____________________________________________________________
consensus TTTGACCGGCTCCCTCGCTGAAAACCCCTTTCTCATCTTGATCTGAGCCCGGTGTGCCTC

. : . : . : . : . : . :
JMSF039I24+ ACAGTCCTCGGGGCTAGAGCAGAACCCGACGCACTCTGGTGAAGGGCGCACTTCTTGAGA
JMSF040I24+ CCCGACGCACTCTGGTGAAGGGCGCACTTCTTGAGA
____________________________________________________________
consensus ACAGTCCTCGGGGCTAGAGCAGAACCCGACGCACTCTGGTGAAGGGCGCACTTCTTGAGA

. : . : . : . : . : . :
JMSF039I24+ TCCTGTATCGATGATCTCACTTTCAGGTGCATCATGTGAGTCTTCTTTAATGGAATCTGC
JMSF040I24+ TCCTGTATCGATGATCTCACTTTCAGGTGCATCATGTGAGTCTTCTTTAATGGAATCTGC
____________________________________________________________
consensus TCCTGTATCGATGATCTCACTTTCAGGTGCATCATGTGAGTCTTCTTTAATGGAATCTGC

. : . : . : . : . : . :
JMSF039I24+ TGCGTCATCTCCGCCATTTTCGCAACTGATCTCGCCGTATTCCTCCGCAGGAGCCGCCGG
JMSF040I24+ TGCGTCATCTCCGCCATTTTCGCAACTGATCTCGCCGTATTCCTCCGCAGGAG
____________________________________________________________
consensus TGCGTCATCTCCGCCATTTTCGCAACTGATCTCGCCGTATTCCTCCGCAGGAGCCGCCGG

. : . : . : . : . : . :
JMSF039I24+ AACNGTCACCTTCTCC
____________________________________________________________
consensus AACNGTCACCTTCTCC