Alignment Contig 12471

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049I17+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGTTTTTTTTTAAAAATAAA
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consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGTTTTTTTTTAAAAATAAA

. : . : . : . : . : . :
rJMFF049I17+ TAGAGTTTTTGTTTCCATAACTGATGTTTCTTGCAAATTGTACACAAAGCAAAGCACTCA
rJMFF021J16+ TAACTGATGTTTCTTGCAAATTGTACACAAAGCAAAGCACTCA
rJMSF033M17+ AAGCACTCA
rJMFF004K21+ TAACTGATGTTTCTTGCAAATTGTACACAAAGCAAAGCACTCA
rJMFF027L14+ TAACTGATGTTTCTTGCAAATTGTACACAAAGCAAAGCACTCA
rJMSF015C10+ AATTGTACACAAAGCAAAGCACTCA
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consensus TAGAGTTTTTGTTTCCATAACTGATGTTTCTTGCAAATTGTACACAAAGCAAAGCACTCA

. : . : . : . : . : . :
rJMFF049I17+ GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
rJMFF021J16+ GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
rJMFF048O09+ ATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
rJMSF033M17+ GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
rJMFF004K21+ GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
rJMFF027L14+ GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
rJMSF015C10+ GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC
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consensus GATATATTATTGTCATGCATTGGAAGAGCCTTTTGGAATTTACAGTGGAAAAGAATACAC

. : . : . : . : . : . :
rJMFF049I17+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
rJMFF021J16+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
rJMFF048O09+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
rJMSF033M17+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
rJMFF004K21+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
rJMFF027L14+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
rJMSF015C10+ ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT
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consensus ACACCTCTATACGAAACGAAAGCACAAGCAAACCGATGAAGATCAACAAACAGCACACTT

. : . : . : . : . : . :
rJMFF049I17+ AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
rJMFF021J16+ AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
rJMFF048O09+ AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
rJMSF033M17+ AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
rJMFF004K21+ AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
rJMFF027L14+ AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
rJMSF015C10+ AAACAAAAGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC
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consensus AAACAAACGTGAAGCGCATCAGAAGCCTGACTGAATTGTAGTTCTCTCCTTTCCGGTTAC

. : . : . : . : . : . :
rJMFF049I17+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
rJMFF021J16+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
rJMFF048O09+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
rJMSF033M17+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
rJMFF004K21+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
rJMFF027L14+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
rJMSF015C10+ ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG
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consensus ACAGGCGAACTGCGCGAATGCCTGGTCTCAATTCAGATACAGGAAGGCATGTTTGGCCAG

. : . : . : . : . : . :
rJMFF049I17+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT
rJMFF021J16+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT
rJMFF048O09+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT
rJMSF033M17+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT
rJMFF004K21+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT
rJMFF027L14+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT
rJMSF015C10+ CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAG---GCT
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consensus CAAAATCGTCCTTCTCGGACATGTCATATTCGTGTACTTCAATTCGTAGTAAAGCTAGCT

. : . : . : . : . : . :
rJMFF049I17+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
rJMFF021J16+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
rJMFF048O09+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
rJMSF033M17+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
rJMFF004K21+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
rJMFF027L14+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
rJMSF015C10+ CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT
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consensus CCGGTACAGTCAACGGGAACGTAAACTCTTCTTCCCAAACCGGCGTCCAATTGTCCTCCT

. : . : . : . : . : . :
rJMFF049I17+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
rJMFF021J16+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
rJMFF048O09+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
rJMSF033M17+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
rJMFF004K21+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
rJMFF027L14+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
rJMSF015C10+ TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT
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consensus TTTTCTTTGTTTTCATCATTTTTTCATCAGCCGGCACACCAGCAATCCCAACCCTTGTGT

. : . : . : . : . : . :
rJMFF049I17+ AGAAGTCTGGTGGGGAGTACAA
rJMFF021J16+ AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAGTGCCATCCAT
rJMFF048O09+ AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAGTGCCATCCAT
rJMSF033M17+ AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAGTGCCATCCAT
rJMFF004K21+ AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAATGCCATCCAT
rJMFF027L14+ AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAATGCCATCCAT
rJMSF015C10+ AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAGTGCCATCCAT
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consensus AGAAGTCTGGTGGGGAGTACAAATCGAAGTGAGTTTGTTTAAAGTCCAAGTGCCATCCAT

. : . : . : . : . : . :
rJMFF021J16+ CTCCCATATATACTTTTACTTTTAAGGTTTTCTTCACTGGCAGTGTGGCACGAGGATCAA
rJMFF048O09+ CTCCCATATATACTTTTACTTTTAAGGTTTTCTTC
rJMSF033M17+ CTCCCATATATACTTTTACTTTTAAGGTTTTCTTCAC
rJMFF004K21+ CTCCCATATATACTTTTACTTTTAAGGTTTTCTTCACTGGCAGTGTGGCACGAGGATCAA
rJMFF027L14+ CTCCCATATATACTTTTACTTTTAAGGTTTTCTTCACTGGCAGTGTGGCACGAGGATCAA
rJMSF015C10+ CTCCCATATATACTTTTACTTTTAAGGTTTTCTTCACTGGCAGTGTGGCACGAGGATCAA
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consensus CTCCCATATATACTTTTACTTTTAAGGTTTTCTTCACTGGCAGTGTGGCACGAGGATCAA

. : . : . : . : . : . :
rJMFF021J16+ AAACCTCCTTCACTAGGAAATCAGGCTTTTTGACATAACCACAGCCTCCATTTGTTCTGA
rJMFF004K21+ AAACCTCCTTCACTAGGAAATCAGGCTTTTTGACATAACCACAGCCTCCATTTGTTCTGA
rJMFF027L14+ AAACCTCCTTCACTAGGAAATCAGGCTTTTTGACATAACCACAGCCTCCATTTGTTCTGA
rJMSF015C10+ AAACCTCCTTCACTAGGAAATCAGGCTTTTTGACATAACCACAGCCTCCATTTGTTCTGA
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consensus AAACCTCCTTCACTAGGAAATCAGGCTTTTTGACATAACCACAGCCTCCATTTGTTCTGA

. : . : . : . : . : . :
rJMFF021J16+ ACATCCCTTGCATCAACCAAAGTGACCGACCATATCCCTGCATATTAAATGCAACCATCT
rJMFF004K21+ ACATCCCTTGCATCAACCAAAGTGACCGACCATATCCCTGCATATTAAATGCAACCATCT
rJMFF027L14+ ACATCCCTTGCATCAACCAAAGTGACCGACCATATCCCTGCATATTAAATGCAACCATCT
rJMSF015C10+ ACATCCCTTGCATCAACCAAAGTGACCGACCATATCCCTGCATATTAAATGCAACCATCT
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consensus ACATCCCTTGCATCAACCAAAGTGACCGACCATATCCCTGCATATTAAATGCAACCATCT

. : . : . : . : . : . :
rJMFF021J16+ GAGCACCATGCATCC
rJMFF004K21+ GAGCACCATGCATCCAACCA
rJMFF027L14+ GAGCACCATGCATCCAACC
rJMSF015C10+ GAGCACCATGCATCCAACCAATTAGTGGTTTATAATTGGAGGAGTTAAACCTAGTACCTT
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consensus GAGCACCATGCATCCAACCAATTAGTGGTTTATAATTGGAGGAGTTAAACCTAGTACCTT

. : . : . : . : . : . :
rJMSF015C10+ TAGGAT
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consensus TAGGAT