Alignment Contig 12462

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF048D22+ TATGGACAGCTATATATATTGATTTAGTACACTAATGGCTTGGATGAAATGCCTTCAAAG
rJMFF024B15+ TATTGATTTAGTAGACTAATGGCTTGGATGAAATGCCTTCAAAG
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consensus TATGGACAGCTATATATATTGATTTAGTACACTAATGGCTTGGATGAAATGCCTTCAAAG

. : . : . : . : . : . :
rJMFF048D22+ CTCAACATGATTGATTAACATTGATCACATTATCACAATGCCATATAACATCCATGATGG
rJMFF024B15+ CTCAACATGATTGATTAACATTGATCACATTATCACAATGCCATATAACATCCATGATGG
rJMFF027N13+ TGATTGATTAACATTGATCACATTATCACAATGCCATATAACATCCATGATGG
rJMSF036E03+ TGCCATATAACATCCATGATGG
rJMSF016P07+ GCCATATAACATCCATGATGG
rJMSF045L01+ GCCATATAACATCCATGATGG
rJMSF008J17+ ATGG
rJMSF009C03+ GATGG
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consensus CTCAACATGATTGATTAACATTGATCACATTATCACAATGCCATATAACATCCATGATGG

. : . : . : . : . : . :
rJMFF048D22+ CATTAGTGGAATCCAAACCCCATTGCGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMFF024B15+ CATTAGTGGAATCCAAACCCCATTGCGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMFF027N13+ CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMSF036E03+ CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMSF016P07+ CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMSF045L01+ CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMSF008J17+ CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA
rJMSF009C03+ CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA
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consensus CATTAGTGGAATCCAAACCCCATTGTGTATAACATCTATGAAGAATGAAAGAATAAACAA

. : . : . : . : . : . :
rJMFF048D22+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMFF024B15+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMFF027N13+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMSF036E03+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMSF016P07+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMSF045L01+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMSF008J17+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
rJMSF009C03+ TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC
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consensus TCATATTCTCCATTCTGTTTCTTATTTCAAGAATCACCAAATGGGGAACCAGTTTTGGCC

. : . : . : . : . : . :
rJMFF048D22+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMFF024B15+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMFF027N13+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMSF036E03+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMSF016P07+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMSF045L01+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMSF008J17+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
rJMSF009C03+ CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG
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consensus CCATCATATCATCACTATCACTATCACTATCTGCAAGCAGGCAGGAAGACATAAGGTATG

. : . : . : . : . : . :
rJMFF048D22+ TGAGCAAATACCATGGAAAAAGGAGCCACAGTTATTGGCTCA
rJMFF024B15+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
rJMFF027N13+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
rJMSF036E03+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
rJMSF016P07+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
rJMSF045L01+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
rJMSF008J17+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
rJMSF009C03+ TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC
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consensus TGAGCAAATACAATGGAAAAAGGAGCCACAGTTATTGGCTCAGATGAGTTCAAATATCGC

. : . : . : . : . : . :
rJMFF024B15+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
rJMFF027N13+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
rJMSF036E03+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
rJMSF016P07+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
rJMSF045L01+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
rJMSF008J17+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
rJMSF009C03+ GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC
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consensus GGCTTCATCTCCGGTATGCTCCCCGATGAATCTACACTCAATTCATTCCCATTTAGCAGC

. : . : . : . : . : . :
rJMFF024B15+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
rJMFF027N13+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
rJMSF036E03+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
rJMSF016P07+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
rJMSF045L01+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
rJMSF008J17+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
rJMSF009C03+ ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT
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consensus ATTGTTTGGCTGTGCAAATCTCCGCCCTTTGCTGTCAAATGATACTCTTCTCTTGTCATT

. : . : . : . : . : . :
rJMFF024B15+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
rJMFF027N13+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
rJMSF036E03+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
rJMSF016P07+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
rJMSF045L01+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
rJMSF008J17+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
rJMSF009C03+ GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG
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consensus GTACCTCTCTTTTGGCTCCGCGGTGATCCCTTTCCATGGCTATGGCTATGATGGTGGTGG

. : . : . : . : . : . :
rJMFF024B15+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
rJMFF027N13+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
rJMSF036E03+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
rJMSF016P07+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
rJMSF045L01+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
rJMSF008J17+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
rJMSF009C03+ TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA
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consensus TGGTGATGGTTTATATGACGTATATGTTTTCTATGGTGCACAAAGCTTCCATTGTATGCA

. : . : . : . : . : . :
rJMFF024B15+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
rJMFF027N13+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
rJMSF036E03+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
rJMSF016P07+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
rJMSF045L01+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
rJMSF008J17+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
rJMSF009C03+ ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA
____________________________________________________________
consensus ACATTGGCCTCCACGGTAGTGTTGCTGTCTAGATTGATCAACAATAAGGTGATGCCTCCA

. : . : . : . : . : . :
rJMFF024B15+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGANAAGCTTGTTGAC
rJMFF027N13+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC
rJMSF036E03+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC
rJMSF016P07+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC
rJMFF019G16+ ATGAGCGTANGCACGTATTTTCTTCGTCCCCGANAAGCTTGTTGAC
rJMSF045L01+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC
rJMSF008J17+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC
rJMSF009C03+ GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC
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consensus GATTGCTTTGCACAATGAGCGTAGGCACGTATTTTCTTCGTCCCCGAGAAGCTTGTTGAC

. : . : . : . : . : . :
rJMFF024B15+ ANAGCATTCCTTCC
rJMFF027N13+ AGAGCATTCC
rJMSF036E03+ AGAGCATTCCTTCCCATTAATCGGTGCCAAAGAAGAGCACTGTAGTAATCTGGATTTGGT
rJMSF016P07+ AGAGCATTCCTTCCCATTAATCGGTGCCAAAGAAGAGCACTGTAGTAATCTGGATTTGGT
rJMFF019G16+ ANAGCATTCCTTCCCATTAATCGGNGCCAAAGAANAGCACTGNANNAATCTGGATTTGG
rJMSF045L01+ AGAGCATTCCTTCCCATTAATCGGTGCCAAAGAAGAGCACTGTAGTAATCTGGATTTGGT
rJMSF008J17+ AGAGCATTCCTTCCCATTAATCGGTGCCAAAGAAGAGCACTGTAGTAATCTGGATTTGGT
rJMSF009C03+ AGAGCATTCCTTCCCATTAATCGGTGCCAAAGAAGAGCACTGTAGTAATCTGGATTTGGT
____________________________________________________________
consensus AGAGCATTCCTTCCCATTAATCGGTGCCAAAGAAGAGCACTGTAGTAATCTGGATTTGGT

. : . : . : . : . : . :
rJMSF036E03+ ACAAAGGTAGTAGTGTTAAGTAAAC
rJMSF016P07+ ACAAAGGTAGTAGTGTTAAGTAAACCGTAGTTTCCTCCAATTAGTGTCTGCCGGCAGTAT
rJMSF045L01+ ACAAAGGTAGTAGTGTTAAGTAAACCGTAGTTTCCTCCAATTAGTGTCTGCCGGCAGTAT
rJMSF008J17+ ACAAAGGTAGTAGTGTTAAGTAAACCGTAGTTTCCTCCAATTAGTGTCTGCCGGCAGTAT
rJMSF009C03+ ACAAAGGTAGTAGTGTTAAGTAAACCGTAGTTTCCTCCAATTAGTGTCTGCCGGCAGTAT
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consensus ACAAAGGTAGTAGTGTTAAGTAAACCGTAGTTTCCTCCAATTAGTGTCTGCCGGCAGTAT

. : . : . : . : . : . :
rJMSF016P07+ GTTTTT
rJMSF045L01+ GTTTTTTGTATCGTACGAGGCTGACATCCCAAGCTGGTCAAGATACCANAAGCTAAAAAC
rJMSF008J17+ GTTTTT
rJMSF009C03+ GTTTTT-GTATCGTACGAGGCTGACAT
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consensus GTTTTTTGTATCGTACGAGGCTGACATCCCAAGCTGGTCAAGATACCANAAGCTAAAAAC

. : . : . : . : . : . :
rJMSF045L01+ AAAAGGCATTGGTGACATGATTGCGGCCAC
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consensus AAAAGGCATTGGTGACATGATTGCGGCCAC