Alignment Contig 12431

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044J23+ ACCGCAAGAAGCATCTCATCACTTATTCTGTAACAATTCTAATCAACATATGGTCGTATA
rJMFF020N18+ AGCATCTCATCACTTATTCTGTAACAATTCTAATCAACATATGGTCGTATA
rJMFF031C03+ ACTTATTCTGTAACAATTCTAATCAACATATGGTCGTATA
rJMSF038N13+ AGCATCTCATCACTTATTCTGTAACAATTCTAATCAACATATGGTCGTATA
rJMSF040N15+ AGCATCTCATCACTTATTCTGTAACAATTCTAATCAACATATGGTCGTATA
____________________________________________________________
consensus ACCGCAAGAAGCATCTCATCACTTATTCTGTAACAATTCTAATCAACATATGGTCGTATA

. : . : . : . : . : . :
rJMFF044J23+ CTTGTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA
rJMFF020N18+ CTTGTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA
rJMFF031C03+ CTTGTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA
rJMSF038N13+ CTTGTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA
rJMSF040N15+ CTTGTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA
rJMSF009B14+ GTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA
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consensus CTTGTATAATGTCGAAGAAGACATGATAGGAAGCCCTATCATTTTCTTCTCTAATTACAA

. : . : . : . : . : . :
rJMFF044J23+ ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA
rJMFF020N18+ ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA
rJMFF031C03+ ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA
rJMSF038N13+ ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA
rJMSF040N15+ ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA
rJMSF009B14+ ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA
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consensus ATGCCTATGAACACCTTACGGTTTCATAGATGTTGCAGTTGGAAGTTGGAACCCCCTTTA

. : . : . : . : . : . :
rJMFF044J23+ ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG
rJMFF020N18+ ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG
rJMFF031C03+ ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG
rJMSF038N13+ ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG
rJMSF040N15+ ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG
rJMSF009B14+ ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG
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consensus ATTTGTATTCCTCCTCTCCTCTCTCTTCAAAATCTTTTGATTCCACCATTTTTTTTCTGG

. : . : . : . : . : . :
rJMFF044J23+ GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC
rJMFF020N18+ GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC
rJMFF031C03+ GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC
rJMSF038N13+ GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC
rJMSF040N15+ GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC
rJMSF009B14+ GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC
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consensus GGTGGAACTTTATCACACCATTAATCTTGAAATGGAGAAATGAATATGGACACTATCATC

. : . : . : . : . : . :
rJMFF044J23+ TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA
rJMFF020N18+ TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA
rJMFF031C03+ TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA
rJMSF038N13+ TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA
rJMSF040N15+ TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA
rJMSF009B14+ TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA
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consensus TACAATCATAATCCCCCTGCCTGCCAATTCTAGCTTAGCTTGTAGCCACTTTTCTAACAA

. : . : . : . : . : . :
rJMFF044J23+ AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC
rJMFF020N18+ AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC
rJMFF031C03+ AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC
rJMSF038N13+ AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC
rJMSF040N15+ AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC
rJMSF009B14+ AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC
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consensus AAGGTTTCTGGCAAACGAGGAGTTTCTCCTCGCTGCTACTTTCTATGACTCGAGCATCCC

. : . : . : . : . : . :
rJMFF044J23+ ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA
rJMFF020N18+ ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA
rJMFF031C03+ ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA
rJMSF038N13+ ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA
rJMSF040N15+ ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA
rJMSF009B14+ ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA
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consensus ATTTCAGCTGCACTGCGTGATCTCTTGCTAACTCGATCAGAGGAATTGTGTCCCGTATGA

. : . : . : . : . : . :
rJMFF044J23+ TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTNACATCCCGC
rJMFF020N18+ TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTAACATCCCGC
rJMFF031C03+ TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTAACATCCCGC
rJMSF038N13+ TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTAACATCCCGC
rJMSF040N15+ TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTAACATCCCGC
rJMSF009B14+ TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTAACATCCCGC
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consensus TCACCCAACCCTCTGGACGAAGTATACGATCTATTTCAACGAACAGTTCTAACATCCCGC

. : . : . : . : . : . :
rJMFF044J23+ ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACNAGAT
rJMFF020N18+ ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACAAGAT
rJMFF031C03+ ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACAAGAT
rJMSF038N13+ ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACAAGAT
rJMSF040N15+ ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACAAGAT
rJMSF009B14+ ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACAAGAT
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consensus ATCTGCTGTGGCTGTTTTGACTAAACTCGAGTGTTAGAAGTCCATCAGCATGGACAAGAT

. : . : . : . : . : . :
rJMFF044J23+ CATAAGTTCTTGGATA
rJMFF020N18+ CATAAGTTCTTGGATACGTTGGAAATGCTTCGCACCAATCGTGTAAAACACCGACGAATC
rJMFF031C03+ CATAAGTTCTTGGATACGTTGGAAATGCTTCGCAC
rJMSF038N13+ CATAAGTTCTTGGATACGTTGGAAATGCTTCGCACCAATCGTGTAAAACACCGACGAATC
rJMSF040N15+ CATAAGTTCTTGGATACGTTGGAAATGCTTCGCACCAATCGTGTAAAACACCGACGAATC
rJMSF009B14+ CATAAGTTCTTGGATACGTTGGAAATGCTTCGCACCAATCGTGTAAAACACCGACGAATC
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consensus CATAAGTTCTTGGATACGTTGGAAATGCTTCGCACCAATCGTGTAAAACACCGACGAATC

. : . : . : . : . : . :
rJMFF020N18+ CCCTGTCAAGGATTANGGGGAGGAAATTCTGAGCACTAGTTGGGATCACATTCATGACCC
rJMSF038N13+ CCCTGTCAAGGATTAGGGGGAGGAAATTCTGAGCACTAGTTGGGATCACATTCATGACCC
rJMSF040N15+ CCCTGTCAAGGATTAGGGGGAGGAAATTCTGAGCACTAGTTGGGATCACATTCATGACCC
rJMSF009B14+ CCCTGTCAAGGATTAGGGGGAGGAAATTCTGAGCACTAGTTGGGATCACATTCATGACCC
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consensus CCCTGTCAAGGATTAGGGGGAGGAAATTCTGAGCACTAGTTGGGATCACATTCATGACCC

. : . : . : . : . : . :
rJMFF020N18+ ACACCGATTTTCCTGCTTCCAATAAAGCAGCATTGAAAC
rJMSF038N13+ ACACCGATTTTCCTGCTTCCAATAAAGCAGCATTGAAACCACCAAAACGGGCGTTCATGT
rJMSF040N15+ ACACCGATTTTCCTGCTTCCAATAAAGCAGCATTGAAACCACCAAAACGGGCGTTCATGT
rJMSF009B14+ ACACCGATTTTCCTGCTTCCAATAAAGCAGCATTGAAACCACCAAAACGGGCGTTCATGT
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consensus ACACCGATTTTCCTGCTTCCAATAAAGCAGCATTGAAACCACCAAAACGGGCGTTCATGT

. : . : . : . : . : . :
rJMSF038N13+ CTAAGACATTCCTAAGCATGTTGTAGGGCGGGGAAGGATCCTCATCGCCAGGTCTCTTCG
rJMSF040N15+ CTAAGACATTCCTAAGCATGTTGTAGGGCGGGG
rJMSF009B14+ CTAAAACATTCCTAAGCATGTT
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consensus CTAAGACATTCCTAAGCATGTTGTAGGGCGGGGAAGGATCCTCATCGCCAGGTCTCTTCG

. : . : . : . : . : . :
rJMSF038N13+ GATGATCAGAGAAAATTAGGGGCGAGAGCAATGACCAATA
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consensus GATGATCAGAGAAAATTAGGGGCGAGAGCAATGACCAATA