Alignment Contig 12427

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044C19+ GTTTTTTTTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCCAA
rJMSF024J05+ CCAA
rJMSF031O07+ CCAA
rJMSF041F03+ CCAA
rJMSF043J20+ A
____________________________________________________________
consensus GTTTTTTTTTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCCAA

. : . : . : . : . : . :
rJMFF044C19+ AGCTCACTAGGGAGTATTTCAAATGTAATTTGTATATACAAAAAAAAAAGGGACAAATTT
rJMSF024J05+ AGCTCACTAGGGAGTATTTCAGATGTAATTTGTATATACAAGAAAAGAAGTGACAAATTT
rJMSF031O07+ AGCTCACTAGGGAGTATTTCAGATGTAATTTGTATATACAAGAAAAGAAGTGACAAATTT
rJMSF041F03+ AGCTCACTAGGGAGTATTTCAGATGTAATTTGTATATACAAGAAAAGAAGTGACAAATTT
rJMSF043J20+ AGCTCACTAGGGAGTATTTCAGATGTAATTTGTATATACAAGAAAAGAAGTGACAAATTT
rJMFF011P10+ GGAGTATTTCAGATGTAATTTGTATATACAAGAAAAGAAGTGACAAATTT
____________________________________________________________
consensus AGCTCACTAGGGAGTATTTCAGATGTAATTTGTATATACAAGAAAAGAAGTGACAAATTT

. : . : . : . : . : . :
rJMFF044C19+ TTTTTTT-CTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
rJMSF024J05+ TTTTTTT-CTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
rJMSF031O07+ TTTTTTT-CTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
JMFS105G12- CTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
JMFN019D05+ AAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
rJMSF041F03+ TTTTTTTTCTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCANGGAGGAGTTTAAGC
rJMSF043J20+ TTTTTTT-CTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
rJMFF011P10+ TTTTTTT-CTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC
rJMSF020G05+ AGC
rJMSF037O24+ AGC
____________________________________________________________
consensus TTTTTTT-CTTTTTCTTTCTTTGAAGGAAAACCTTTGCTTCATCATGGAGGAGTTTAAGC

. : . : . : . : . : . :
rJMFF044C19+ AAAAGCTGCACCCTCATCTTCCACCATCTGTGATACCGGAAAAAGGGGGCAAATAAGGTT
rJMSF024J05+ ANAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAAGGTT
rJMSF031O07+ ANAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAAGGTT
JMFS105G12- AGAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAAGGTT
JMFN019D05+ AGAAGCTGCATCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAACGTT
rJMSF041F03+ AAAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAANAAGGGNGCAAATAAGGTT
rJMSF043J20+ ANAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAANAAGGGTGCAAATAAGGTT
rJMFF011P10+ ANAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAANAAGGGTGCAAATAAGGTT
rJMSF020G05+ AGAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAAGGTT
rJMSF037O24+ AGAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAAGGTT
____________________________________________________________
consensus AGAAGCTGCAGCCTCATCTTCCACCATCTGTGATACCGGAAGAAGGGTGCAAATAAGGTT

. : . : . : . : . : . :
rJMFF044C19+ TCGGTCTCCATACACGTT-GTCCACCCCCCCTGAAGTTGGCCAAAATTTGGCAGTCTTGA
rJMSF024J05+ TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCANAATTTGGCAGTCTTGA
rJMSF031O07+ TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCAGAATTTGGCAGTCTTGA
JMFS105G12- TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCAGAATTTGGCAGTCTTGA
JMFN019D05+ TCGGTCTTCATACACGTT-GTCCACACGCCCTGT
rJMSF041F03+ TCGGTCTCCATACACGTT-GTCCACACNCCCTGTAGTTGGCCANAATTTGGCAGTCTTGA
rJMSF043J20+ TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCAGAATTTGGCAGTCTTGA
rJMFF011P10+ TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCANAATTTGGCAGTCTTGA
rJMSF020G05+ TCGGTCTCCATACACGTTTGTCCACACGCCCTGTAGTTGGCCAGAATTTGGCAGTCTTGA
rJMSF037O24+ TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCAGAATTTGGCAGTCTTGA
____________________________________________________________
consensus TCGGTCTCCATACACGTT-GTCCACACGCCCTGTAGTTGGCCAGAATTTGGCAGTCTTGA

. : . : . : . : . : . :
rJMFF044C19+ CCCATTGAGCAGGGAAGGCACCATACTCCCTAAAGAACGGTTTTGCCCATGCATCCCCCA
rJMSF024J05+ GCCATTGAGCAGGGAAGGCAGCATACTCCCTAGAGTACGGTTTTGTCCATGCATCCGCCA
rJMSF031O07+ GCCATTGAGCAGGGAAGGCAGCATACTCCCTAGAGTACGGTTTTGTCCATGCATCCGCCA
JMFS105G12- GCCATTGAGCAGGGAAGGCAGCATACTCCCTAGAGTACGGTTTTGTCCATGCATCCGCCA
rJMSF041F03+ NCCATTGAGCAGGGAAGGCAGCATACTCCCTANAGTACGGTTTTGTCCATGCATCCGCCA
rJMSF043J20+ GCCATTGAGCAGGGAAGGCAGCATACTCCCTANAGTACGGTTTTGTCCATGCATCCGCCA
rJMFF011P10+ GCCATTGANCAGGGAAGGCAGCATACTCCCTANAGTACGGTTTTGTCCATGCATCCNCCA
rJMSF020G05+ GCCATTGAGCAGGGAAGGCAGCATACTCCCTAGAGTACGGTTTTGTCCATGCATCCGCCA
rJMSF037O24+ GCCATTGAGCAGGGAAGGCAGCATACTCCCTAGAGTACGGTTTTGTCCATGCATCCGCCA
____________________________________________________________
consensus GCCATTGAGCAGGGAAGGCAGCATACTCCCTAGAGTACGGTTTTGTCCATGCATCCGCCA

. : . : . : . : . : . :
rJMFF044C19+ TAAGTACCGAGGGAGGATGAGGGGCATTCTTAAAAACATTGTTGTTAATATCAAACTTGC
rJMSF024J05+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAANAACATTGTTGTTAATATCGAACTTGC
rJMSF031O07+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAANAACATTGTTGTTAATATCGAACTTGC
JMFS105G12- TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAAGAACATTGTTGTTAATATCGAACTTGC
rJMSF041F03+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAANAACATTGTTGTTAATATCGAACTTGC
rJMSF043J20+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAANAACATTGTTGTTAATATCGAACTTGC
rJMFF011P10+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAANAACATTGTTGTTAATATCGAACTTGC
rJMSF020G05+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAAGAACATTGTTGTTAATATCGAACTTGC
rJMSF037O24+ TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAAGAACATTGTTGTTAATATCGAACTTGC
____________________________________________________________
consensus TAAGTAGCGAGGGAGGATGAGGGGCATTCTTAAGAACATTGTTGTTAATATCGAACTTGC

. : . : . : . : . : . :
rJMFF044C19+ CTTTCTCGATCTGGGAAATTTCTTCTCTGATGGAAATAAGGGTGTCACA-AAACTATCTA
rJMSF024J05+ CTTTCTCGATCTGTGCAATTTCTTCTCTGATGGAGATAAGTGTGTCACANAACCTATCTA
rJMSF031O07+ CTTTCTCGATCTGTGCAATTTCTTCTCTGATGGAGATAAGTGTGTCACAGAACCTATCTA
JMFS105G12- CTTTCTCGATCTGTGCAATTTCTTCT
rJMSF041F03+ CTTTCTCGATCTGNGCAATTTCTTCTCTGANGGANATAAGTGNGTCACANAACCTATCTA
rJMSF043J20+ CTTTCTCGATCTGTGCAATTTCTTCTCTGATGGAGATAAGTGTGTCACANAACCTATCTA
rJMFF011P10+ CTTTCTCGATCTGTGCAATTTCTTCTCTGATGGANATAAGTGNGTCACANAA-CTATCTA
rJMSF020G05+ CTTTCTCGATCTGTGCAATTTCTTCTCTGATGGAGATAAGTGTGTCACAGAACCTATCTA
rJMSF037O24+ CTTTCTCGATCTGCGCAATTTCTTCTCTGATGGAGATAAGTGTGTCACAGAACCTATCTA
JMFS106D10- CTCTGATGGAGATAAGTGTGTCACAGAACCTATCTA
JMFS106F10- CTGATGGAGATAAGTGTGTCACAGAACCTATCTA
____________________________________________________________
consensus CTTTCTCGATCTGTGCAATTTCTTCTCTGATGGAGATAAGTGTGTCACAGAACCTATCTA

. : . : . : . : . : . :
rJMFF044C19+ ACTCTGCCTTGCTCCCACTTTCGGTGGGCTCAATCATTACCGGGCCAGGGACAGGCCACG
rJMSF024J05+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
rJMSF031O07+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
rJMSF041F03+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTANCGNGCCAGGGACAGGCCACG
rJMSF043J20+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTANCGTGCCAGGGACAGGCCACG
rJMFF011P10+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
rJMSF020G05+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
rJMSF037O24+ ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
JMFS106D10- ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
JMFS106F10- ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG
____________________________________________________________
consensus ACTCTGCCTTGCTCTCACTTTCGGTTGGCTCAATCATTAGCGTGCCAGGGACAGGCCACG

. : . : . : . : . : . :
rJMFF044C19+ ACATGGCCGGTCCGTGAAATCCATAGCCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
rJMSF024J05+ ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
rJMSF031O07+ ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
rJMSF041F03+ ACATGGTCGGNCCGTGAAATCCATAGNCCATAANACGTTTAGCAACATCTTCGGCCTCTA
rJMSF043J20+ ACATGGTCGGTCCGTGAAATCCATAGTCCATAANACGTTTAGCAACATCTTCGGCCTCTA
rJMFF011P10+ ACATGGTCGGTCCGTGAAATCCATAGTCCATAANACGTTTAGCAACATCTTCGGCCTCTA
rJMSF020G05+ ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
rJMSF037O24+ ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
JMFS106D10- ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
JMFS106F10- ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA
____________________________________________________________
consensus ACATGGTCGGTCCGTGAAATCCATAGTCCATAAGACGTTTAGCAACATCTTCGGCCTCTA

. : . : . : . : . : . :
rJMFF044C19+ TCCCAG
rJMSF024J05+ TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
rJMSF031O07+ TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
rJMSF041F03+ TTCCAGCAGNGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
rJMSF043J20+ TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
rJMFF011P10+ TTCCAGCAGNGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
rJMSF020G05+ TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
rJMSF037O24+ TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
JMFS106D10- TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
JMFS106F10- TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT
____________________________________________________________
consensus TTCCAGCAGTGTTCTTAAAGCCCCTCAAGTCGATAATGAATTCATGAGCAACGGTTCCAT

. : . : . : . : . : . :
rJMSF024J05+ TGACACCACGGAATANAACGGGGTAGTGCTTCTCTAANCGCTTANCCATGTAGTTAGCAT
rJMSF031O07+ TGACACCACGGAATANAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
rJMSF041F03+ TGACACCACGGAATANAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
rJMSF043J20+ TGACACCACGGAATAGAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
rJMFF011P10+ TGACACCACGGAATANAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
rJMSF020G05+ TGACACCACGGAATAGAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
rJMSF037O24+ TGACACCACGGAATAGAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
JMFS106D10- TGACACCACGGAATAGAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
JMFS106F10- TGACACCACGGAATAGAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT
____________________________________________________________
consensus TGACACCACGGAATAGAACGGGGTAGTGCTTCTCTAAACGCTTAGCCATGTAGTTAGCAT

. : . : . : . : . : . :
rJMSF024J05+ TCAATATAGCTATCTTTGATGCATCA
rJMSF031O07+ TCAATATAGCTATCTTTGATGCA
rJMSF041F03+ TCAATATAGCTATCTTTGATGCATCAGT
rJMSF043J20+ TCAATATAGCTATCTTTGATGCATCAGTAAGTCCC
rJMFF011P10+ TCAATATAGCTATCTTTGATGCATCAGTAAGTCCCTGGGAGCCCATCATGGCAATGTAGG
rJMSF020G05+ TCAATATAGCTATCTTTGATGCATCAGTAAGTCCCTGGGAGCCCATCATGGCAATGTAGG
rJMSF037O24+ TCAATATAGCTATCTTTGATGCATCANTAAGTCCCTGGGAGC
JMFS106D10- TCAATATAGCTATCTTTGATGCATCAGTAAGTCCCTGGGAGCCCATCATGGCAATGTAGG
JMFS106F10- TCAATATAGCTATCTTTGATGCATCAGTAAGTCCCTGGGAGCCCATCATGGCAATGTAGG
____________________________________________________________
consensus TCAATATAGCTATCTTTGATGCATCAGTAAGTCCCTGGGAGCCCATCATGGCAATGTAGG

. : . : . : . : . : . :
rJMFF011P10+ TATATGATATCGGCAAG
rJMSF020G05+ TATATGATATCGGCAAGATAAGAGCAGAACCCCAAGGTGCAGCTGAGATAGCACCAAGAG
JMFS106D10- TATATGATATCGGCAAGATAAGAGCAGAACCCCAAGGTGCAGCTGAGATAGCACCAAGAG
JMFS106F10- TATATGATATCGGCAAGATAAGAGCAGAACCCCAAGGTGCAGCTGAGATAGCACCAAGAG
____________________________________________________________
consensus TATATGATATCGGCAAGATAAGAGCAGAACCCCAAGGTGCAGCTGAGATAGCACCAAGAG

. : . : . : . : . : . :
rJMSF020G05+ GCTGGCTCTTGTCTGGGGATGGGATGCCNTCCAGTTGGTACCACAGGATGTGAGGGT
JMFS106D10- GCTGGCTCTTGTCTGGGGATGGGATGCC-TCCAGTTGGTACCACAGGATGTGAGGGTAAA
JMFS106F10- GCTGGCTCTTGTCTGGGGATGGGATGCC-TCCAGTTGGTACCACAGGATGTGAGGGTAAA
____________________________________________________________
consensus GCTGGCTCTTGTCTGGGGATGGGATGCC-TCCAGTTGGTACCACAGGATGTGAGGGTAAA

. : . : . : . : . : . :
JMFS106D10- AATGGTGCCAAATGCTTCTTCACACCAATAGGACCCATGCCAGGACCGCCTCCACCGTGA
JMFS106F10- AATGGTGCCAAATGCTTCTTCACACCAATAGGACCCATGCCAGGACCGCCTCCACCGTGA
____________________________________________________________
consensus AATGGTGCCAAATGCTTCTTCACACCAATAGGACCCATGCCAGGACCGCCTCCACCGTGA

. : . : . : . : . : . :
JMFS106D10- GGAATGCAGAATGTCTTGTGGAGATTTAGATGGCAAACATCGGCACCAATAAAACCCGGG
JMFS106F10- GGAATGCAGAATGTCTTGTGGAGATTTAGATGGCAAACATCGGCACCAATAAAACCCGGG
____________________________________________________________
consensus GGAATGCAGAATGTCTTGTGGAGATTTAGATGGCAAACATCGGCACCAATAAAACCCGGG

. : . : . : . : . : . :
JMFS106D10- CTTGTCAAACCAACCTGAGCATTCATATTGGCTCCA
JMFS106F10- CTTGTCAAACCAACCTGAGCATTCATATTGGCTCCA
____________________________________________________________
consensus CTTGTCAAACCAACCTGAGCATTCATATTGGCTCCA