Alignment Contig 12414

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF042P13+ ACCCTGGAGATTTTTTTTTTTTTTTTACCAAACGAGCTTTTTTTCATTCCACTACTCATC
rJMFF003E09+ C
rJMFF025I08+ C
____________________________________________________________
consensus ACCCTGGAGATTTTTTTTTTTTTTTTACCAAACGAGCTTTTTTTCATTCCACTACTCATC

. : . : . : . : . : . :
rJMFF042P13+ ATCAAAAGGGTAATATCTGACCATAACTAAAATGTTGCACTTCCAAAGTGTCTATCTAGC
rJMFF003E09+ ATCAAAAGGGTAATATCTGACCATAACTAAAATGTTGCACTTCCAAAGTGTCTATCTAGC
rJMFF025I08+ ATCAAAAGGGTAATATCTGACCATAACTAAAATGTTGCACTTCCAAAGTGTCTATCTAGC
____________________________________________________________
consensus ATCAAAAGGGTAATATCTGACCATAACTAAAATGTTGCACTTCCAAAGTGTCTATCTAGC

. : . : . : . : . : . :
rJMFF042P13+ AACTCCAAGCTTCCTGTTTTTTGTTCACAATCAATCCCCAATCGGTCAACCCAAGCCTAG
rJMFF003E09+ AACTCCAAGCTTCCTGTTTTTTGTTCACAATCAATCCCCAATCGGTCAACCCAAGCCTAG
rJMFF025I08+ AACTCCAAGCTTCCTGTTTTTTGTTCACAATCAATCCCCAATCGGTCAACCCAAGCCTAG
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consensus AACTCCAAGCTTCCTGTTTTTTGTTCACAATCAATCCCCAATCGGTCAACCCAAGCCTAG

. : . : . : . : . : . :
rJMFF042P13+ CATTAACACAAGGCTAATAACATATATAGTATATACGTATGTAAAACTAAGCGGTTGGGG
rJMFF003E09+ CATTAACACAAGGCTAATAACATATATAGTATATACGTATGTAAAACTAAGCGGTTGGGG
rJMFF025I08+ CATTAACACAAGGCTAATAACATATATAGTATATACGTATGTAAAACTAAGCGGTTGGGG
rJMSF015J12+ ACATATATAGTATATACGTATGTAAAACTAAGCGGTTGGGG
____________________________________________________________
consensus CATTAACACAAGGCTAATAACATATATAGTATATACGTATGTAAAACTAAGCGGTTGGGG

. : . : . : . : . : . :
rJMFF042P13+ GTATCTCACGTAATTCCGTGTTTTTGTATATACATTAAAGTCAACAAAAAGAAACCATCC
rJMFF003E09+ GTATCTCACGTAATTCCGTGTTTTTGTATATACATTAAAGTCAACAAAAAGAAACCATCC
rJMFF025I08+ GTATCTCACGTAATTCCGTGTTTTTGTATATACATTAAAGTCAACAAAAAGAAACCATCC
rJMSF015J12+ GTATCTCACGTAATTCCGTGTTTTTGTATATACATTAAAGTCAACAAAAAGAAACCATCC
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consensus GTATCTCACGTAATTCCGTGTTTTTGTATATACATTAAAGTCAACAAAAAGAAACCATCC

. : . : . : . : . : . :
rJMFF042P13+ ACCGCTATAGTATGCTTGATAATAACCAGCTGAGTCAATGGTAGGAACTGGGTGTGTCGG
rJMFF003E09+ ACCGCTATAGTATGCTTGATAATAACCAGCTGAGTCAATGGTAGGAACTGGGTGTGTCGG
rJMFF025I08+ ACCGCTATAGTATGCTTGATAATAACCAGCTGAGTCAATGGTAGGAACTGGGTGTGTCGG
rJMSF015J12+ ACCGCTATAGTATGCTTGATAATAACCAGCTGAGTCAATGGTAGGAACTGGGTGTGTCGG
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consensus ACCGCTATAGTATGCTTGATAATAACCAGCTGAGTCAATGGTAGGAACTGGGTGTGTCGG

. : . : . : . : . : . :
rJMFF042P13+ TTCCACCGATGAAAGCCACCCAATCAATCAGAGTAGCACCAGGTTGAAAATTGTGGTGTT
rJMFF003E09+ TTCCACCGATGAAAGCCACCCAATCAATCAGAGTAGCACCAGGTTGAAAATTGTGGTGTT
rJMFF025I08+ TTCCACCGATGAAAGCCACCCAATCAATCAGAGTAGCACCAGGTTGAAAATTGTGGTGTT
rJMSF015J12+ TTCCACCGATGAAAGCCACCCAATCAATCAGAGTAGCACCAGGTTGAAAATTGTGGTGTT
____________________________________________________________
consensus TTCCACCGATGAAAGCCACCCAATCAATCAGAGTAGCACCAGGTTGAAAATTGTGGTGTT

. : . : . : . : . : . :
rJMFF042P13+ ATTTTGTCGTCATCCAAATGGTGTTCGTTCTTACCCCCAGACCATCTTTGGTGTAGTATG
rJMFF003E09+ ATTTTGTCGTCATCCAAATGGTGTTCGTTCTTACCCCCAGACCATCTTTGGTGTAGTATG
rJMFF025I08+ ATTTTGTCGTCATCCAAATGGTGTTCGTTCTTACCCCCAGACCATCTTTGGTGTAGTATG
rJMSF015J12+ ATTTTGTCGTCATCCAAATGGTGTTCGTTCTTACCCCCAGACCATCTTTGGTGTAGTATG
____________________________________________________________
consensus ATTTTGTCGTCATCCAAATGGTGTTCGTTCTTACCCCCAGACCATCTTTGGTGTAGTATG

. : . : . : . : . : . :
rJMFF042P13+ ATCAAAGGTTCACCCCTCGTTGAACAATAAACACATCCGTAGCAACATGTATATTCAAAA
rJMFF003E09+ ATCAAAGGTTCACCCCTCGTTGAACAATAAACACATCCGTAGCAACATGTATATTCAAAA
rJMFF025I08+ ATCAAAGGTTCACCCCTCGTTGAACAATAAACACATCCGTAGCAACATGTATATTCAAAA
rJMSF015J12+ ATCAAAGGTTCACCCCTCGTTGAACAATAAACACATCCGTAGCAACATGTATATTCAAAA
____________________________________________________________
consensus ATCAAAGGTTCACCCCTCGTTGAACAATAAACACATCCGTAGCAACATGTATATTCAAAA

. : . : . : . : . : . :
rJMFF042P13+ TCCCACTGAAGGTCTTCAATTTCTTGTCTTC
rJMFF003E09+ TCCCACTGAAGGTCTTCAATTTCTTGTCTTCAGCAAACTTGCCCGCTCCTGATCTAAGCA
rJMFF025I08+ TCCCACTGAAGGTCTTCAATTTCTTGTCTTCAGCAAACTTGCCCGCTCCTGATCTAAGCA
rJMSF015J12+ TCCCACTGAAGGTCTTCAATTTCTTGTCTTCAGCAAACTTGCCCGCTCCTGATCTAAGCA
____________________________________________________________
consensus TCCCACTGAAGGTCTTCAATTTCTTGTCTTCAGCAAACTTGCCCGCTCCTGATCTAAGCA

. : . : . : . : . : . :
rJMFF003E09+ GAGGAAGAGAGAAAGACAGAGCATAGCCACCAGCAGATTTATACTTCGATATGGTACGCA
rJMFF025I08+ GAGGAAGAGAGAAAGACAGAGCATAGCCACCAGCAGATTTATACTTCGATATGGTACGCA
rJMSF015J12+ GAGGAAGAGAGAAAGACAGAGCATAGCCACCAGCAGATTTATACTTCGATATGGTACGCA
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consensus GAGGAAGAGAGAAAGACAGAGCATAGCCACCAGCAGATTTATACTTCGATATGGTACGCA

. : . : . : . : . : . :
rJMFF003E09+ ATCAGGCGTTTCACACAAACAACAAAATTAAGAACCAGAACTTGACTTTTGGACCCATAC
rJMFF025I08+ ATCAGGCGTTTCACACAAACAACAAAATTAAGAACCAGAACTTGACTTTTGGACCCATAC
rJMSF015J12+ ATCAGGCGTTTCACACAAACAACAAAATTAAGAACCAGAACTTGACTTTTGGACCCATAC
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consensus ATCAGGCGTTTCACACAAACAACAAAATTAAGAACCAGAACTTGACTTTTGGACCCATAC

. : . : . : . : . : . :
rJMFF003E09+ TTGTTTCTCATGGGTACCATATCCAGGACCTCCTCTTCTTGANGGTCGCCCTTCC
rJMFF025I08+ TTGTTTCTCATGGGTACCATATCCAGGACCTCCTCTTCTTGANGGTCGCCCTTCC
rJMSF015J12+ TTGTTTCTCATGGGTACCATATCCAGGACCTCCTCTTCTTGAGGGTCGCCCTTCCCCAAA
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consensus TTGTTTCTCATGGGTACCATATCCAGGACCTCCTCTTCTTGAGGGTCGCCCTTCCCCAAA

. : . : . : . : . : . :
rJMSF015J12+ TGAGGTGCCATCAGCATCTTTTGTATTATGTGCTGTTCCACGACGACCACTATATCTGTA
____________________________________________________________
consensus TGAGGTGCCATCAGCATCTTTTGTATTATGTGCTGTTCCACGACGACCACTATATCTGTA

. : . : . : . : . : . :
rJMSF015J12+ AGTACCATTATCAACAGAAGAATGAGAACTTCGTCCACTTCCAGTGGGTTTGAACTCTCC
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consensus AGTACCATTATCAACAGAAGAATGAGAACTTCGTCCACTTCCAGTGGGTTTGAACTCTCC

. : . : . : . : . : . :
rJMSF015J12+ ACCACGTGCACTTAGTCCATTTTTCACTTCCACAAGACTTCCTTCAGCAGAATCTTGAG
____________________________________________________________
consensus ACCACGTGCACTTAGTCCATTTTTCACTTCCACAAGACTTCCTTCAGCAGAATCTTGAG