Alignment Contig 12400

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF041F21+ GGCTTTAATTTGATGAAGTTAAGAAAAATAAATGACTTCTTATGTTTATAATACATTTTT
rJMFF033B24+ AAAATAAATGACTTCTTATGTTTATAATACATTTTT
rJMFF034N13+ AAAATAAATGACTTCTTATGTTTATAATACATTTTT
rJMSF006P12+ AATGACTTCTTATGTTTATAATACATTTTT
rJMSF050K10+ AAAATAAATGACTTCTTATGTTTATAATACATTTTT
rJMSF002N22+ AAAATAAATGACTTCTTATGTTTATAATACATTTTT
rJMFF010C20+ ATGACTTCTTATGTTTATAATACATTTTT
rJMFF040G21+ TGTTTATAATACATTTTT
____________________________________________________________
consensus GGCTTTAATTTGATGAAGTTAAGAAAAATAAATGACTTCTTATGTTTATAATACATTTTT

. : . : . : . : . : . :
rJMFF041F21+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMFF033B24+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMFF034N13+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMSF006P12+ GTTCAACAAGAATGCAGAAAANCAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMSF050K10+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMSF002N22+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMFF008O16+ AAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMFF010C20+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
rJMFF040G21+ GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT
____________________________________________________________
consensus GTTCAACAAGAATGCAGAAAAACAAAGCTAATACAAACATAGCATGATGAATTTAAGGCT

. : . : . : . : . : . :
rJMFF041F21+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMFF033B24+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMFF034N13+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMSF006P12+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAANA
rJMSF050K10+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
JMFN013G01- AGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMSF002N22+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMFF008O16+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMFF010C20+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
rJMFF040G21+ TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA
____________________________________________________________
consensus TTTCCAAACATATGTTGTGGCAACAGAGAGTTTACAAACAGTGCAAAAGTAAGATTAAGA

. : . : . : . : . : . :
rJMFF041F21+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMFF033B24+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMFF034N13+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMSF006P12+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMSF050K10+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
JMFN013G01- AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMSF002N22+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
JMFF008O16- AATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMFF008O16+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMFF010C20+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
rJMFF040G21+ AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG
____________________________________________________________
consensus AAGCAGAAATTATGATCTTTTAATTTACCCCATCAAGACTTCTAGCAGATGGGCAGAGGG

. : . : . : . : . : . :
rJMFF041F21+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMFF033B24+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMFF034N13+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMSF006P12+ GCACCATTCCATTCCTTCNAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACNTG
rJMSF050K10+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
JMFN013G01- GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMSF002N22+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
JMFF008O16- GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMFF008O16+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMFF010C20+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
rJMFF040G21+ GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG
____________________________________________________________
consensus GCACCATTCCATTCCTTCAAACAATCCAGCAGTGGATCTATGAGCTTCCCTTCACACATG

. : . : . : . : . : . :
rJMFF041F21+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
rJMFF033B24+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
rJMFF034N13+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGT
rJMSF006P12+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTT
rJMSF050K10+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
JMFN013G01- GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
rJMSF002N22+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
JMFF008O16- GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
rJMFF008O16+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
rJMFF010C20+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
rJMFF040G21+ GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA
____________________________________________________________
consensus GCTGTGAATACCTTGTCACATTCCTCCCCGGGCGACCGGACTTTCTCACCGGTTAAAAGA

. : . : . : . : . : . :
rJMFF041F21+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMFF033B24+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMFF034N13+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMSF050K10+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
JMFN013G01- CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMSF002N22+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
JMFF008O16- CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMFF008O16+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMFF010C20+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
rJMFF040G21+ CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC
____________________________________________________________
consensus CTGGTTCCTAGTTCTGCCCTCACAAACTTGTAGAGTGGGAAGGACCTGCAGTCTTGGATC

. : . : . : . : . : . :
rJMFF041F21+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMFF033B24+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMFF034N13+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMSF050K10+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
JMFN013G01- CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMSF002N22+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
JMFF008O16- CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMFF008O16+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMFF010C20+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
rJMFF040G21+ CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA
____________________________________________________________
consensus CTGTTAGGAATGGCTGCCTTGCCATTCTCGAGCTCGCACCTCGCCCCCTCGATTTCTTTA

. : . : . : . : . : . :
rJMFF041F21+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMFF033B24+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMFF034N13+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMSF050K10+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
JMFN013G01- GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMSF002N22+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
JMFF008O16- GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMFF008O16+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMFF010C20+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
rJMFF040G21+ GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG
____________________________________________________________
consensus GGCAAAATGGCTTTGAGTTCCTCCTCGAACGCCCCGATTTTGTGGAAGATGGATGTGCTG

. : . : . : . : . : . :
rJMFF041F21+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMFF033B24+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMFF034N13+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMSF050K10+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
JMFN013G01- GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMSF002N22+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
JMFF008O16- GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMFF008O16+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMFF010C20+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
rJMFF040G21+ GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC
____________________________________________________________
consensus GAGCTCCTCTCCATTTCACCATTAGCCAAGGCATGATCAACCAGGACCTGCCTCAGCTTC

. : . : . : . : . : . :
rJMFF041F21+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCG
rJMFF033B24+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTANGCGAACACGTACTCTCTA
rJMFF034N13+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTANGCGAACACGTACTCTCTA
rJMSF050K10+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCTCTA
JMFN013G01- TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCTCTA
rJMSF002N22+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCTCTA
JMFF008O16- TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCTCTA
rJMFF008O16+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCTCTA
rJMFF010C20+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCT--A
rJMFF040G21+ TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTA
JMFS008C03- CGAACACGTACTCTCTA
____________________________________________________________
consensus TGCATCAATGGGTAGTTTTCGCTGCACGGGTCATCAGCGTAGGCGAACACGTACTCTCTA

. : . : . : . : . : . :
rJMFF033B24+ TCGACGACTTTGANGAGATCCTTTTCTGAGAAT
rJMFF034N13+ TCGACGACTTTGAGGAGATCCTTTTCTGANAATCTGGAANGGTGGAGCTCACC
rJMSF050K10+ TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
JMFN013G01- TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
rJMSF002N22+ TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
JMFF008O16- TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
rJMFF008O16+ TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
rJMFF010C20+ TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
JMFS008C03- TGGACGACTTTGAGGAGATCCTTTTATGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC
____________________________________________________________
consensus TCGACGACTTTGAGGAGATCCTTTTCTGAGAATCTGGAAGGGTGGAGCTCACCATTGTTC

. : . : . : . : . : . :
rJMSF050K10+ CCCACTGTTAACACCTTCTTGGCA-CCTGACTAACTGCGTTTTTAGTGCAGG
JMFN013G01- CCCACTGTTAACACCTTCTTGGCAACCTGACTAACTGCGTTTTTAGTGCA
rJMSF002N22+ CCCACTGTTAACACCTTCTTGGCAACCTGACTAACTGCGTTTT
JMFF008O16- CCCACTGTTAACACCTTCTTGGCAACCTGACTAACTGCG
rJMFF008O16+ CCCACTGTTAACACCTTCTTGGCAACCTGACT
rJMFF010C20+ CCCACTGTTAACACCTTCTTGGCAACCTGACTAACTGCGTTTTTAGTGCAGG
JMFS008C03- CCCACTGTTAACACTTTCTTGGCAACCTGACTAACTGCGTTTTTAGTGCAGGCCTTGAGA
____________________________________________________________
consensus CCCACTGTTAACACCTTCTTGGCAACCTGACTAACTGCGTTTTTAGTGCAGGCCTTGAGA

. : . : . : . : . : . :
JMFS008C03- TTCTCCTCCAGGTGCCTCAGGTCAATGGCTTGGCACAATGCAACCATATAGGTTGCAGAC
____________________________________________________________
consensus TTCTCCTCCAGGTGCCTCAGGTCAATGGCTTGGCACAATGCAACCATATAGGTTGCAGAC

. : . : . : . : . : . :
JMFS008C03- ATGAGCTTCAGAATGTCGAGGGCCTCGGCTGTTTTTCTCGACGAGATGAGCCCGAGAGAG
____________________________________________________________
consensus ATGAGCTTCAGAATGTCGAGGGCCTCGGCTGTTTTTCTCGACGAGATGAGCCCGAGAGAG