Alignment Contig 12380

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF036P22+ TTATTTATACGACAAACTGCATTGCACAGACCATGTATGTCACAGCTGCTTTCTTGCCTC
rJMFF031F05+ TATTTATACGACAAACTGCATTGCACAGACCATGTATGTCACAGCTGCTTTCTTGCCTC
rJMSF025D18+ GTATGTCACAGCTGCTTTCTTGCCTC
____________________________________________________________
consensus TTATTTATACGACAAACTGCATTGCACAGACCATGTATGTCACAGCTGCTTTCTTGCCTC

. : . : . : . : . : . :
rJMFF036P22+ TGCATCATATGGGTTCAATCGGCCGGTAATTAATAATAAGAGTAAGTGTATGTGAAATTT
rJMFF031F05+ TGCATCATATGGGTTCAATCGGCCGGTAATTAATAATAAGAGTAAGTGTATGTGAAATTT
rJMSF025D18+ TGCATCATATGGGTTCAATCGGCCGGTAATTAATAATAAGAGTAAGTGTATGTGAAATTT
rJMSF010N24+ TGTGAAATTT
____________________________________________________________
consensus TGCATCATATGGGTTCAATCGGCCGGTAATTAATAATAAGAGTAAGTGTATGTGAAATTT

. : . : . : . : . : . :
rJMFF036P22+ AATTTATTGCTCTTAGCTAGCTTAATACTACTGCATACAGCGCAGCACGGCAGAGCATTG
rJMFF031F05+ AATTTATTGCTCTTAGCTAGCTTAATACTACTGCATACAGCGCAGCACGGCAGAGCATTG
rJMSF025D18+ AATTTATTGCTCTTAGCTAGCTTAATACTACTGCATACAGCGCAGCACGGCAGAGCATTG
rJMSF010N24+ AATTTATTGCTCTTAGCTAGCTTAATACTACTGCATACAGCGCAGCACGGCAGAGCATTG
____________________________________________________________
consensus AATTTATTGCTCTTAGCTAGCTTAATACTACTGCATACAGCGCAGCACGGCAGAGCATTG

. : . : . : . : . : . :
rJMFF036P22+ CAGTACATCATTCCGGTCACTGCCCATTATATTAGGGAGTATTTGAATTAGAACATTTTA
rJMFF031F05+ CAGTACATCATTCCGGTCACTGCCCATTATATTAGGGAGTATTTGAATTAGAACATTTTA
rJMSF025D18+ CAGTACATCATTCCGGTCACTGCCCATTATATTAGGGAGTATTTGAATTAGAACATTTTA
rJMSF010N24+ CAGTACATCATTCCGGTCACTGCCCATTATATTAGGGAGTATTTGAATTAGAACATTTTA
____________________________________________________________
consensus CAGTACATCATTCCGGTCACTGCCCATTATATTAGGGAGTATTTGAATTAGAACATTTTA

. : . : . : . : . : . :
rJMFF036P22+ CCAGTGCCATCCCTTCGAGGGACAGATTCATGGATATCCATTTTGCGCCAATTCCCCACC
rJMFF031F05+ CCAGTGCCATCCCTTCGAGGGACAGATTCATGGATATCCATTTTGCGCCAATTCCCCACC
rJMSF025D18+ CCAGTGCCATCCCTTCGAGGGACAGATTCATGGATATCCATTTTGCGCCAATTCCCCACC
rJMSF010N24+ CCAGTGCCATCCCTTCGAGGGACAGATTCATGGATATCCATTTTGCGCCAATTCCCCACC
____________________________________________________________
consensus CCAGTGCCATCCCTTCGAGGGACAGATTCATGGATATCCATTTTGCGCCAATTCCCCACC

. : . : . : . : . : . :
rJMFF036P22+ AGTGATGCCATTTCCTCTGATTTGTCAAATAACCCCAGCAGTCCACCCGTATGTATAAAA
rJMFF031F05+ AGTGATGCCATTTCCTCTGATTTGTCAAATAACCCCAGCAGTCCACCCGTATGTATAAAA
rJMSF025D18+ AGTGATGCCATTTCCTCTGATTTGTCAAATAACCCCAGCAGTCCACCCGTATGTATAAAA
rJMSF010N24+ AGTGATGCCATTTCCTCTGATTTGTCAAATAACCCCAGCAGTCCACCCGTATGTATAAAA
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consensus AGTGATGCCATTTCCTCTGATTTGTCAAATAACCCCAGCAGTCCACCCGTATGTATAAAA

. : . : . : . : . : . :
rJMFF036P22+ AGAATCTTTCTCCCTTCCCATTTTTTTGGATTCTCAGTCATATCTTTCATCATCCCATAT
rJMFF031F05+ AGAATCTTTCTCCCTTCCCATTTTTTTGGATTCTCAGTCATATCTTTCATCATCCCATAT
rJMSF025D18+ AGAATCTTTCTCCCTTCCCATTTTTTTGGATTCTCAGTCATATCTTTCATCATCCCATAT
rJMSF010N24+ AGAATCTTTCTCCCTTCCCATTTTTTTGGATTCTCAGTCATATCTTTCATCATCCCATAT
____________________________________________________________
consensus AGAATCTTTCTCCCTTCCCATTTTTTTGGATTCTCAGTCATATCTTTCATCATCCCATAT

. : . : . : . : . : . :
rJMFF036P22+ GCTGCTTTCCCGCTGTAAACAGGGTCAAGAATTACACCAGTGGTTTCAGCAATTTCTTTC
rJMFF031F05+ GCTGCTTTCCCGCTGTAAACAGGGTCAAGAATTACACCAGTGGTTTCAGCAATTTCTTTC
rJMSF025D18+ GCTGCTTTCCCGCTGTAAACAGGGTCAAGAATTACACCAGTGGTTTCAGCAATTTCTTTC
rJMSF010N24+ GCTGCTTTCCCGCTGTAAACAGGGTCAAGAATTACACCAGTGGTTTCAGCAATTTCTTTC
____________________________________________________________
consensus GCTGCTTTCCCGCTGTAAACAGGGTCAAGAATTACACCAGTGGTTTCAGCAATTTCTTTC

. : . : . : . : . : . :
rJMFF036P22+ ACAAATTTAAGTTCCTCGCTAGTGTTCATAGCATACCCAAGACCTTTGGCATTTTGGATG
rJMFF031F05+ ACAAATTTAAGTTCCTCGCTAGTGTTCATAGCATACCCAAGACCTTTGGCATTTTGGATG
rJMSF025D18+ ACAAATTTAAGTTCCTCGCTAGTGTTCATAGCATACCCAAGACCTTTGGCATTTTGGATG
rJMSF010N24+ ACAAATTTAAGTTCCTCGCTAGTGTTCATAGCATACCCAAGACCTTTGGCATTTTGGATG
____________________________________________________________
consensus ACAAATTTAAGTTCCTCGCTAGTGTTCATAGCATACCCAAGACCTTTGGCATTTTGGATG

. : . : . : . : . : . :
rJMFF036P22+ CTGACAATATCATGTGAGCTAATCCCTGCATTGAGTCCATCAAGTAGCCCTTGAACGTAT
rJMFF031F05+ CTGACAATATCATGTGAGCTAATCCCTGCATTGAGTCCATCAAGTAGCCCTTGAACGTAT
rJMSF025D18+ CTGACAATATCATGTGAGCTAATCCCTGCATTGAGTCCATCAAGTAGCCCTTGAACGTAT
rJMSF010N24+ CTGACAATATCATGTGAGCTAATCCCTGCATTGAGTCCATCAAGTAGCCCTTGAACGTAT
____________________________________________________________
consensus CTGACAATATCATGTGAGCTAATCCCTGCATTGAGTCCATCAAGTAGCCCTTGAACGTAT

. : . : . : . : . : . :
rJMFF036P22+ TCGTAAAAGTATTCAGGATCATCACAAACGCAGAGTGCATGAACTTTTGCCTTCAAGCCA
rJMFF031F05+ TCGTAAAAGTATTCNGGATCATCACAAACGCAGAGTGCATGAACTTTTGCCTTCAAGCCA
rJMSF025D18+ TCGTAAAAGTATTCAGGATCATCACAAACGCAGAGTGCATGAACTTTTGCCTTCAAGCCA
rJMSF010N24+ TCGTAAAAGTATTCAGGATCATCACAAACGCAGAGTGCATGAACTTTTGCCTTCAAGCCA
____________________________________________________________
consensus TCGTAAAAGTATTCAGGATCATCACAAACGCAGAGTGCATGAACTTTTGCCTTCAAGCCA

. : . : . : . : . : . :
rJMFF036P22+ CTAAGCCACGATCCAATAGATAATCCAGCAATTGTACCCCCACTGCCACATGCTACTACT
rJMFF031F05+ CTAAGCCACGATCCAATAGATAATCCAGCAATTGTACCCCCACTGCCACATGCTACTACT
rJMSF025D18+ CTAAGCCACGATCCAATAGATAATCCAGCAATTGTACCCCCACTGCCACATGCTACTACT
rJMSF010N24+ CTAAGCCACGATCCAATAGATAATCCAGCAATTGTACCCCCACTGCCACATGCTACTACT
____________________________________________________________
consensus CTAAGCCACGATCCAATAGATAATCCAGCAATTGTACCCCCACTGCCACATGCTACTACT

. : . : . : . : . : . :
rJMFF036P22+ ATGTCATCAAATTTTTG
rJMFF031F05+ ATGTCATCAAATTTTTGTTCAAAAGCGGTATCCTGAAGCTGCTGTTCNATCTCTCTAATA
rJMSF025D18+ ATGTCATCAAATTTTTGTTCAAA-GCGGTATCCTGAAGCTGCTGTTCAATCTCTCTAATA
rJMSF010N24+ ATGTCATCAAATTTTTGTTCAAAAGCGGTATCCTGAAGCTGCTGTTCAATCTCTCTAATA
____________________________________________________________
consensus ATGTCATCAAATTTTTGTTCAAAAGCGGTATCCTGAAGCTGCTGTTCAATCTCTCTAATA

. : . : . : . : . : . :
rJMSF025D18+ GCTTCAATA
rJMSF010N24+ GCTTCAATATAGCCCCAAGTTCCTAAAGAATTGGATCCTCCAACAGGTATGACATAGGGC
____________________________________________________________
consensus GCTTCAATATAGCCCCAAGTTCCTAAAGAATTGGATCCTCCAACAGGTATGACATAGGGC

. : . : . : . : . : . :
rJMSF010N24+ TTTCTCCCTTCGTGCAACAATT
____________________________________________________________
consensus TTTCTCCCTTCGTGCAACAATT