Alignment Contig 12345

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF031O17+ TCTCTCTACTTGTTTTCACATAAAGATTGGGGCTTTTGCTCAAAGCCCTCTCCTTTTTTT
rJMFF021G02+ AGCCCTCTCCTTTTTTT
____________________________________________________________
consensus TCTCTCTACTTGTTTTCACATAAAGATTGGGGCTTTTGCTCAAAGCCCTCTCCTTTTTTT

. : . : . : . : . : . :
rJMFF031O17+ TCCACCTTTCTTTGGCTTTTAATGTGTTGGGGATGGATGAAGCAACATTGTCTTTTAGTT
rJMFF021G02+ TCCACCTTTCTTTGGCTTTTAATGTGTTGGGGATGGATGAAGCAACATTGTCTTTTAGTT
____________________________________________________________
consensus TCCACCTTTCTTTGGCTTTTAATGTGTTGGGGATGGATGAAGCAACATTGTCTTTTAGTT

. : . : . : . : . : . :
rJMFF031O17+ TTTACACAGGCAATCATCTCTTCAAGAAATCACCATAAAAAGCCAAGATTCTACAAGGGA
rJMFF021G02+ TTTACNCAGGCAATCATCTCTTCAAGAAATCACCATAAAAAGCCAAGATTCTACAAGGGA
____________________________________________________________
consensus TTTACACAGGCAATCATCTCTTCAAGAAATCACCATAAAAAGCCAAGATTCTACAAGGGA

. : . : . : . : . : . :
rJMFF031O17+ GTCTTTTCAACAAGCCAAGAAAGGAACAAGATTCTGGGTAGCTCTTGAATTAAACTATTT
rJMFF021G02+ GTCTTTTCAACAAGCCAAGAAAGGAACAAGATTCTGGGTAGCTCTTGAATTAAACTATTT
____________________________________________________________
consensus GTCTTTTCAACAAGCCAAGAAAGGAACAAGATTCTGGGTAGCTCTTGAATTAAACTATTT

. : . : . : . : . : . :
rJMFF031O17+ CACAATCACATGGGCATTGGTTCATCATGCTCATTCAAACATGCTTTACACTTGGACGAA
rJMFF021G02+ CA
rJMFF023E14+ ATCACATGGGCATTGGTTCATCATGCTCATTCAAACATGCTTTACACTTGGACGAA
rJMSF028O14+ CATGGGCATTGGTTCATCATGCTCATTCAAACATGCTTTACACTTGGACGAA
____________________________________________________________
consensus CACAATCACATGGGCATTGGTTCATCATGCTCATTCAAACATGCTTTACACTTGGACGAA

. : . : . : . : . : . :
rJMFF031O17+ ATCCGGGATCCAAATGAAACAGTACAAAGTGTACCAAAACTTTAAAACCCGAGGACTTCA
rJMFF023E14+ ATCCGGGATCCAAATGAAACAGTACAAAGTGTACCAAAACTTTAAAACCCGAGGACTTCA
JMFN013F15- TACCAAAACTTTAAAACCCTAGGACTTCA
rJMSF028O14+ ATCCGGGATCCAAATGAAACAGTACAAAGTGTACCAAAACTTTAAAACCCGAGGACTTCA
____________________________________________________________
consensus ATCCGGGATCCAAATGAAACAGTACAAAGTGTACCAAAACTTTAAAACCCGAGGACTTCA

. : . : . : . : . : . :
rJMFF031O17+ AATTGGAACCGGCAAGGAGGAGGTCATTAGCTTGCTTACCTCTCATCCAAGACCAAATGG
rJMFF023E14+ AATTGGAACCGGCAAGGAGGAGGTCATTAGCTTGCTTACCTCTCATCCAAGACCAAATGG
JMFN013F15- AATTGGAACCGGCAAGGAGGAGGTCATTAGCTTGCTTACCTCTCATCCAAGACCAAATGG
rJMSF028O14+ AATTGGAACCGGCAAGGAGGAGGTCATTAGCTTGCTTACCTCTCATCCAAGACCAAATGG
____________________________________________________________
consensus AATTGGAACCGGCAAGGAGGAGGTCATTAGCTTGCTTACCTCTCATCCAAGACCAAATGG

. : . : . : . : . : . :
rJMFF031O17+ GTGTATTTACAAGGAAAATCCGCTTTAAGAATGTCTCTAATCGAAGCTCGAAGATCGGCT
rJMFF023E14+ GTGTATTTACAAGGAAAATCCGCTTTAAGAATGTCTCTAATCGAAGCTCGAAGATCGGCT
JMFN013F15- GTGTATTTACAAGGAAAATCCGCTTTAAGAATGTCTCTAATCGAAGCTCGAAGATCGGCT
rJMSF028O14+ GTGTATTTACAAGGAAAATCCGCTTTAAGAATGTCTCTAATCGAAGCTCGAAGATCGGCT
____________________________________________________________
consensus GTGTATTTACAAGGAAAATCCGCTTTAAGAATGTCTCTAATCGAAGCTCGAAGATCGGCT

. : . : . : . : . : . :
rJMFF031O17+ CCATCTGCCCCGCAAATAATCATCTACAGATATGTTTTGGTCGGAGCTAGTAATCGAGAG
rJMFF023E14+ CCATCTGCCCCGCAAATAATCATCTACAGATATGTTTTGGTCGGAGCTAGTAATCGAGAG
JMFN013F15- CCATCTGCCCCGCAAATAATCATCTACAGATATGTTTTGGTCGGAGCTAGTAATCGAGAG
rJMSF028O14+ CCATCTGCCCCGCAAATAATCATCTACAGATATGTTTTGGTCGGAGCTAGTAATCGAGAG
____________________________________________________________
consensus CCATCTGCCCCGCAAATAATCATCTACAGATATGTTTTGGTCGGAGCTAGTAATCGAGAG

. : . : . : . : . : . :
rJMFF031O17+ GGAATCATCCTCCAAATTTAACAATGCAAGATTAATAAAAGATTGGATGCTCGATGCAGG
rJMFF023E14+ GGAATCATCCTCCAAATTTAACAATGCAAGATTAATAAAAGATTGGATGCTCGATGCAGG
JMFN013F15- GGAATCATCCTCCAAATTTAACAATGCAAGATTAATAAAAGATTGGATGCTCGATGCAGG
rJMSF028O14+ GGAATCATCCTCCAAATTTAACAATGCAAGATTAATAAAAGATTGGATGCTCGATGCAGG
____________________________________________________________
consensus GGAATCATCCTCCAAATTTAACAATGCAAGATTAATAAAAGATTGGATGCTCGATGCAGG

. : . : . : . : . : . :
rJMFF031O17+ CTGTTCACCGCCAACTTCATCTACTTCATCGCCACTATTGAGGTTTTGCCTCGCCCATTG
rJMFF023E14+ CTGTTCACCGCCAACTTCATCTACTTCATCGCCACTATTGAGGTTTTGCCTCGCCCATTG
JMFN013F15- CTGTTCACCGCCAACTTCATCTACTTCATCGCCACTATTGAGGTTTTGCCTCGCCCATTG
rJMSF028O14+ CTGTTCACCGCCAACTTCATCTACTTCATCGCCACTATTGAGGTTTTGCCTCGCCCATTG
____________________________________________________________
consensus CTGTTCACCGCCAACTTCATCTACTTCATCGCCACTATTGAGGTTTTGCCTCGCCCATTG

. : . : . : . : . : . :
rJMFF031O17+ AATTGTTTCGGGCTCACCTTCGAGAAGTTTCACAACAATGTCAATTTTAGGACGAAAAAT
rJMFF023E14+ AATTGTTTCGGGCTCACCTTCGAGAAGTTTCACAACAATGTCAATTTTAGGACGAAAAAT
JMFN013F15- AATTGTTTCGGGCTCACCTTCGAGAAGTTTCACAACAATGTCAATTTTAGGACGAAAAAT
rJMSF028O14+ AATTGTTTCGGGCTCACCTTCGAGAAGTTTCACAACAATGTCAATTTTAGGACGAAAAAT
____________________________________________________________
consensus AATTGTTTCGGGCTCACCTTCGAGAAGTTTCACAACAATGTCAATTTTAGGACGAAAAAT

. : . : . : . : . : . :
rJMFF031O17+ AGGTTCTCTTCTTATGCAAAGCGTCGCAGCCAAAACCATTCGGTCAAACTCATCGTGGTC
rJMFF023E14+ AGGTTCTCTTCTTATGCAAAGCGTCGCAGCCAAAACCATTCGGTCAAACTCATCGTGGTC
JMFN013F15- AGGTTCTCTTCTTATGCAAAGCGTCGCAGCCAAAACCATTCGGTCAAACTCATCGTGGTC
rJMSF028O14+ AGGTTCTCTTCTTATGCAAAGCGTCGCAGCCAAAACCATTCGGTCAAACTCATCGTGGTC
____________________________________________________________
consensus AGGTTCTCTTCTTATGCAAAGCGTCGCAGCCAAAACCATTCGGTCAAACTCATCGTGGTC

. : . : . : . : . : . :
rJMFF031O17+ ATATGCATTAAGCAAGCTCGCATCTAGCAATTCTGTAGCTTTTCCATTCTTCANAATTTG
rJMFF023E14+ ATATGCATTAAGCAAGCTCGCATCTAGCAATTCTGTAGCTTTTCCATTCTTCAGAATTTG
JMFN013F15- ATATGCATTAAGCAAGCTCGCATCTAGCAATTCTGTAGCTTTTCCATTCTTCAGAATTTG
rJMSF028O14+ ATATGCATTAAGCAAGCTCGCATCTAGCAATTCTGTAGCTTTTCCATTCTTCAGAATTTG
____________________________________________________________
consensus ATATGCATTAAGCAAGCTCGCATCTAGCAATTCTGTAGCTTTTCCATTCTTCAGAATTTG

. : . : . : . : . : . :
rJMFF031O17+ NTTTGCC
rJMFF023E14+ TTTTGCCCACAGCACCAAGCTTTCTTGGCCCTTGGCATTTGTGTTATCAATCGGCTTTTT
JMFN013F15- TTTTGCCCACAGCACCAAGCTTTCTTGGCCCTTGGCATTTGTGTTATCAATCGGCTTTTT
rJMSF028O14+ TTTTGCCCACAGCACCAAGCTTTCTTGGCCCTTGGCATTTGTGTTATCAATCGGCTTTTT
____________________________________________________________
consensus TTTTGCCCACAGCACCAAGCTTTCTTGGCCCTTGGCATTTGTGTTATCAATCGGCTTTTT

. : . : . : . : . : . :
rJMFF023E14+ ACCCGATAAAAGTTCGAGCAGGACAACACCTAACGCGTATACATCAATTTTCTCGTT
JMFN013F15- ACCCGATAAAAGTTCGAGCAGGACAACACCTAACGCGTATACATCAATTTTCTCGTT
rJMSF028O14+ ACCCGATAAAAGTTCGAGCAGGACAACACCTAACGCGTATACATCAATTTTCTCGTTTAT
____________________________________________________________
consensus ACCCGATAAAAGTTCGAGCAGGACAACACCTAACGCGTATACATCAATTTTCTCGTTTAT

. : . : . : . : . : . :
rJMSF028O14+ TTTTCCATGCACAAAATATTCAGGAGCTAAGTATCCAAACGTTCCAGCAACATCAACACC
____________________________________________________________
consensus TTTTCCATGCACAAAATATTCAGGAGCTAAGTATCCAAACGTTCCAGCAACATCAACACC

. : . : . : . : . : . :
rJMSF028O14+ ATCTAAG
____________________________________________________________
consensus ATCTAAG