Alignment Contig 12252

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF011G15+ AGTCAAGATCCCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT
rJMFF025A03+ GTCAAGATCCCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT
rJMFF032A07+ GTCAAGATCCCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT
rJMFF019P24+ CCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT
rJMFF025K04+ CCCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT
rJMFF020J08+ GTCAAGATCCCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT
____________________________________________________________
consensus AGTCAAGATCCCAGAAAGAAATCAAAGATGTAGTAAAAAGAGTACCTAAATTCTAAAAGT

. : . : . : . : . : . :
rJMFF011G15+ AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA
rJMFF025A03+ AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA
rJMFF032A07+ AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA
rJMFF019P24+ AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA
rJMFF025K04+ AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA
rJMFF020J08+ AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA
____________________________________________________________
consensus AGAGACTGTAACCAAGAAAGTTAAAGATATAACCCTCGGACGGTAACAACTAAATGTACA

. : . : . : . : . : . :
rJMFF011G15+ CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG
rJMFF025A03+ CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG
rJMFF032A07+ CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG
rJMFF019P24+ CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG
rJMFF025K04+ CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG
rJMFF020J08+ CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG
____________________________________________________________
consensus CTATTTAAAAAACAAGTTTAAAAAGATAATTGTAGTAAAGAAACAACCAGGTCCAGCGGG

. : . : . : . : . : . :
rJMFF011G15+ TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGTCGATGGAAAAGCGTCGCGT
rJMFF025A03+ TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGTCGATGGAAAAGCGTCGCGT
rJMFF032A07+ TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGTCGATGGAAAAGCGTCGCGT
rJMFF019P24+ TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGCCGATGGAAAAGCGTCGCGT
rJMFF025K04+ TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGTCGATGGAAAAGCGTCGCGT
rJMFF020J08+ TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGTCGATGGAAAAGCGTCGCGT
____________________________________________________________
consensus TTTCTAAGTCGAAACAATCACAAGTCACAGTCATAAGGTGTCGATGGAAAAGCGTCGCGT

. : . : . : . : . : . :
rJMFF011G15+ CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG
rJMFF025A03+ CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG
rJMFF032A07+ CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG
rJMFF019P24+ CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG
rJMFF025K04+ CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG
rJMFF020J08+ CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG
____________________________________________________________
consensus CGTTCATCACTCACTTTTTACCCAAGGTAGGGAACTGCCCGACATCCTCAATAGATGGAG

. : . : . : . : . : . :
rJMFF011G15+ CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC
rJMFF025A03+ CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC
rJMFF032A07+ CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC
rJMFF019P24+ CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC
rJMFF025K04+ CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC
rJMFF020J08+ CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC
____________________________________________________________
consensus CGTCAACACTGGACAGGCTTCCACCGTATCCTCCTCGGCCACGCCCACGGCCCCTCCCAC

. : . : . : . : . : . :
rJMFF011G15+ GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT
rJMFF025A03+ GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT
rJMFF032A07+ GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT
rJMFF019P24+ GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT
rJMFF025K04+ GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT
rJMFF020J08+ GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT
____________________________________________________________
consensus GTCCACCAGAGCGATAGTAGTTTTCTCCTTCAGCTGGTTTCAAAAACTCGTTGATGTTTT

. : . : . : . : . : . :
rJMFF011G15+ TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA
rJMFF025A03+ TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA
rJMFF032A07+ TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA
rJMFF019P24+ TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA
rJMFF025K04+ TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA
rJMFF020J08+ TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA
____________________________________________________________
consensus TCGTCTTTTTAACCTTTTCTCCAGCCTCTTTCTTTTTTTCTTTCTCAGATCCCAGTTTAA

. : . : . : . : . : . :
rJMFF011G15+ TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT
rJMFF025A03+ TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT
rJMFF032A07+ TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT
rJMFF019P24+ TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT
rJMFF025K04+ TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT
rJMFF020J08+ TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT
____________________________________________________________
consensus TGAAGACTTCCTCATCATTCTTCTTGTTGGAAAGCAACTGCATCGACGCAAACTCCTTAT

. : . : . : . : . : . :
rJMFF011G15+ CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA
rJMFF025A03+ CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA
rJMFF032A07+ CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA
rJMFF019P24+ CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA
rJMFF025K04+ CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA
rJMFF020J08+ CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA
____________________________________________________________
consensus CCAAACACACTTTTCTCTCCTCGGGCTTTGATGCAAGCAACGCCTTCCTCTTCTCCTCCA

. : . : . : . : . : . :
rJMFF011G15+ GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCTTCGGTCT
rJMFF025A03+ GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCTTCGGTCT
rJMFF032A07+ GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCT
rJMFF019P24+ GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCTTCGGTCT
rJMFF025K04+ GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCTTCGGTCT
rJMFF020J08+ GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCTTCGGTCT
____________________________________________________________
consensus GTACCTTCTCATATTCCTCCAAAGTCATCTCCTTCTCCTCGGGCTCCTTTTCTTCGGTCT

. : . : . : . : . : . :
rJMFF011G15+ CATTTGGTGGAGAATCCTTGGTGGCATCTCCAGTATCTTCCTGGCTAGTTTGNTTCTCAG
rJMFF025A03+ CATTTGGTGGAGAATCCTTGGTGGCATCTCCAGTATCTTCCTGGCTAGTTTGTTTCTCAG
rJMFF019P24+ CATTTGGTGGAGAATCCTTGGTGGCATCTCCAGTATCTTCCTGGCTAGTTTGTTTCTCAG
rJMFF025K04+ CATTTGGTGGAGAATCCTTGGTGGCATCTCCAGTATCTTCCTGGCTAGTTTGTTTCTCAG
rJMFF020J08+ CATTTGGTGGAGAATCCTTGGTGGCATCTCCAGTATCTTCCTGGCTAGTTTGTTTCTCAG
____________________________________________________________
consensus CATTTGGTGGAGAATCCTTGGTGGCATCTCCAGTATCTTCCTGGCTAGTTTGTTTCTCAG

. : . : . : . : . : . :
rJMFF011G15+ TATCAACAGTCTTCT
rJMFF025A03+ TATCAACAGTCTTCTCAACTTCATTA
rJMFF019P24+ TATCAACAGTCTTCTCAACTTCATTA
rJMFF025K04+ TATCAACAGTCTTCTCAACTTCATTA
rJMFF020J08+ TATCAACAGTCTTCTCAACTTCATTAATANGT
____________________________________________________________
consensus TATCAACAGTCTTCTCAACTTCATTAATANGT