Alignment Contig 12251

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF010O24+ TGTTGTATAGGAGGAAAAATCCAGAGTGAGATAGTACACAACTCTTCTCAATAGACTCCC
rJMFF010L15+ AAAATCCAGAGTGAGATAGTACACAACTCTTCTCAATAGACTCCC
rJMSF043H19+ GAGTGAGATAGTACACAACTCTTCTCAATAGACTCCC
rJMFF024J17+ AAAATCCAGAGTGAGATAGTACACAACTCTTCTCAATAGACTCCC
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consensus TGTTGTATAGGAGGAAAAATCCAGAGTGAGATAGTACACAACTCTTCTCAATAGACTCCC

. : . : . : . : . : . :
rJMFF010O24+ ATATTACAAAAACAAGAATCCAGGAGTCCAGTTCTGCAGAAGGTGAAGAAGAAGAAGAAG
rJMSF045O23+ AGAATCCAGGAGTCCAGTTCTGCAGAAGGTGAAGAAGAAGAAGAAG
rJMFF010L15+ ATATTACAAAAACAAGAATCCAGGAGTCCAGTTCTGCAGAAGGTGAAGAAGAAGAAGAAG
rJMSF043H19+ ATATTACAAAAACAAGAATCCAGGAGTCCAGTTCTGCAGAAGGTGAAGAAGAAGAAGAAG
rJMFF024J17+ ATATTACAAAAACAAGAATCCAGGAGTCCAGTTCTGCAGAAGGTGAAGAAGAAGAAGAAG
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consensus ATATTACAAAAACAAGAATCCAGGAGTCCAGTTCTGCAGAAGGTGAAGAAGAAGAAGAAG

. : . : . : . : . : . :
rJMFF010O24+ CTAATCTAATGGCAGCAAATGCAAACGAAACGGATCACGCTATTAACAATGTTACAGAAT
rJMSF045O23+ CTAATCTAATGGCAGCAAATGCAAACGAAACGGATCACGCTATTAACAATGTTACAGAAT
rJMFF010L15+ CTAATCTAATGGCAGCAAATGCAAACGAAACGGATCACGCTATTAACAATGTTACAGAAT
rJMSF043H19+ CTAATCTAATGGCAGCAAATGCAAACGAAACGGATCACGCTATTAACAATGTTACAGAAT
rJMFF024J17+ CTAATCTAATGGCAGCAAATGCAAACGAAACGGATCACGCTATTAACAATGTTACAGAAT
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consensus CTAATCTAATGGCAGCAAATGCAAACGAAACGGATCACGCTATTAACAATGTTACAGAAT

. : . : . : . : . : . :
rJMFF010O24+ CCGCTACCGTTATGATACAACGAACATCAGGATTAGGAGCAGCAAAACATGGCGTCCGAG
rJMSF045O23+ CCGCTACCGTTATGATACAACGAACATCAGGATTAGGAGCAGCAAAACATGGCGTCCGAG
rJMFF010L15+ CCGCTACCGTTATGATACAACGAACATCAGGATTAGGAGCAGCAAAACATGGCGTCCGAG
rJMSF043H19+ CCGCTACCGTTATGATACAACGAACATCAGGATTAGGAGCAGCAAAACATGGCGTCCGAG
rJMFF024J17+ CCGCTACCGTTATGATACAACGAACATCAGGATTAGGAGCAGCAAAACATGGCGTCCGAG
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consensus CCGCTACCGTTATGATACAACGAACATCAGGATTAGGAGCAGCAAAACATGGCGTCCGAG

. : . : . : . : . : . :
rJMFF010O24+ GAATCTAAAGCTCGTATTCCTGAGAATCTGCGCTACCAGACCTGGTCCTTGAATCAGCGC
rJMSF045O23+ GAATCTAAAGCTCGTATTCCTGAGAATCTGCGCTACCAGACCTGGTCCTTGAATCAGCGC
rJMFF010L15+ GAATCTAAAGCTCGTATTCCTGAGAATCTGCGCTACCAGACCTGGTCCTTGAATCAGCGC
rJMSF043H19+ GAATCTAAAGCTCGTATTCCTGAGAATCTGCGCTACCAGACCTGGTCCTTGAATCAGCGC
rJMFF024J17+ GAATCTAAAGCTCGTATTCCTGAGAATCTGCGCTACCAGACCTGGTCCTTGAATCAGCGC
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consensus GAATCTAAAGCTCGTATTCCTGAGAATCTGCGCTACCAGACCTGGTCCTTGAATCAGCGC

. : . : . : . : . : . :
rJMFF010O24+ CGAATGTCCTCCTGCTCATGTTGGCCCGTTGCACCAGCCGGACCAACGCCTCAACAACTT
rJMSF045O23+ CGAATGTCCTCCTGCTCATGTTGGCCCGTTGCACCAGCCGGACCAACGCCTCAACAACTT
rJMFF010L15+ CGAATGTCCTCCTGCTCATGTTGGCCCGTTGCACCAGCCGGACCAACGCCTCAACAACTT
rJMSF043H19+ CGAATGTCCTCCTGCTCATGTTGGCCCGTTGCACCAGCCGGACCAACGCCTCAACAACTT
rJMFF024J17+ CGAATGTCCTCCTGCTCATGTTGGCCCGTTGCACCAGCCGGACCAACGCCTCAACAACTT
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consensus CGAATGTCCTCCTGCTCATGTTGGCCCGTTGCACCAGCCGGACCAACGCCTCAACAACTT

. : . : . : . : . : . :
rJMFF010O24+ CCGACATAGGTGGTCGGAACTCAGGCTCCGGCTGGACACATAGTGCAATGACATCAGCAA
rJMSF045O23+ CCGACATAGGTGGTCGGAACTCAGGCTCCGGCTGGACACATAGTGCAATGACATCAGCAA
rJMFF010L15+ CCGACATAGGTGGTCGGAACTCAGGCTCCGGCTGGACACATAGTGCAATGACATCAGCAA
rJMSF043H19+ CCGACATAGGTGGTCGGAACTCAGGCTCCGGCTGGACACATAGTGCAATGACATCAGCAA
rJMFF024J17+ CCGACATAGGTGGTCGGAACTCAGGCTCCGGCTGGACACATAGTGCAATGACATCAGCAA
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consensus CCGACATAGGTGGTCGGAACTCAGGCTCCGGCTGGACACATAGTGCAATGACATCAGCAA

. : . : . : . : . : . :
rJMFF010O24+ AGCGGGAGAGAGATTTAACTGGATAGAGCCCTTTCAGTGCTGGATCAACCATCTTAGATA
rJMSF045O23+ AGCGGGAGAGAGATTTAACTGGATAGAGCCCTTTCAGTGCTGGATCAACCATCTTAGATA
rJMFF010L15+ AGCGGGAGAGAGATTTAACTGGATAGAGCCCTTTCAGTGCTGGATCAACCATCTTAGATA
rJMSF043H19+ AGCGGGAGAGAGATTTAACTGGATAGAGCCCTTTCAGTGCTGGATCAACCATCTTAGATA
rJMFF024J17+ AGCGGGAGAGAGATTTAACTGGATAGAGCCCTCTCAGTGCTGGATCAACCATCTTAGATA
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consensus AGCGGGAGAGAGATTTAACTGGATAGAGCCCTTTCAGTGCTGGATCAACCATCTTAGATA

. : . : . : . : . : . :
rJMFF010O24+ AGGCGTCAATGTCGTGGAGCTGAGGTGTAGCCCATCGAACTAAGGATTGCTCGGGTCTTG
rJMSF045O23+ AGGCGTCAATGTCGTGGAGCTGAGGTGTAGCCCATCGAACTAAGGATTGCTCGGGTCTTG
rJMFF010L15+ AGGCGTCAATGTCGTGGAGCTGAGGTGTAGCCCATCGAACTAAGGATTGCTCGGGTCTTG
rJMSF043H19+ AGGCGTCAATGTCGTGGAGCTGAGGTGTAGCCCATCGAACTAAGGATTGCTCGGGTCTTG
rJMFF024J17+ AGGCGTCAATGTCGTGGAGCTGAGGTGTAGCCCATCGAACTAAGGATTGCTCGGGTCTTG
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consensus AGGCGTCAATGTCGTGGAGCTGAGGTGTAGCCCATCGAACTAAGGATTGCTCGGGTCTTG

. : . : . : . : . : . :
rJMFF010O24+ GCCTTGAACTGTCAAATGGTGTTCTTCCAGTAAGAAGTTCCAACATGGCAACGCCAAAAC
rJMSF045O23+ GCCTTGAACTGTCAAATGGTGTTCTTCCAGTAAGAAGTTCCAACATGGCAACGCCAAAAC
rJMFF010L15+ GCCTTGAACTGTCAAATGGTGTTCTTCCAGTAAGAAGTTCCAACATGGCAACGCCAAAAC
rJMSF043H19+ GCCTTGAACTGTCAAATGGTGTTCTTCCAGTAAGAAGTTCCAACATGGCAACGCCAAAAC
rJMFF024J17+ GCCTTGAACTGTCAAATGGTGTTCTTCCAGTAAGAAGTTCCAACATGGCAACGCCAAAAC
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consensus GCCTTGAACTGTCAAATGGTGTTCTTCCAGTAAGAAGTTCCAACATGGCAACGCCAAAAC

. : . : . : . : . : . :
rJMFF010O24+ TGTACACATCGCTCTTTATTGTATACTGACCAGACATGGCCACCTCAGGCGCACCTTATC
rJMSF045O23+ TGTACACATCGCTCTTTATTGTATACTGACCAGACATGGCCACCTCAGGCGCACCATATC
rJMFF010L15+ TGTACACATCGCTCTTTATTGTATACTGACCAGACATGGCCACCTCAGGCGCACCATATC
rJMSF043H19+ TGTACACATCGCTCTTTATTGTATACTGACCAGACATGGCCACCTCAGGCGCACCATATC
rJMFF024J17+ TGTACACATCGCTCTTTATTGTATACTGACCAGACATGGCCACCTCAGGCGCACCATATC
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consensus TGTACACATCGCTCTTTATTGTATACTGACCAGACATGGCCACCTCAGGCGCACCATATC

. : . : . : . : . : . :
rJMFF010O24+ CAGACGCTGAATTCTGGTTTAGAGCCTGATCTTCGTCTGGGATAAGGCTAGCTAACCCAG
rJMSF045O23+ CAGACGCTGAATTCTGGTTTAGAGCCTGATCTTCGTCTGGGATAAGGCTAGCTAACCCAG
rJMFF010L15+ CAGACGCTGAATTCTGGTTTAGAGCCTGATCTTCGTCTGGGATAAGGCTAGCTAACCCAG
rJMSF043H19+ CAGACGCTGAATTCTGGTTTAGAGCCTGATCTT
rJMFF024J17+ CAGACGCTGAATTCTGGTTTAGAGCCTGATCTTCGTCTGGGATAAGGCTAGCTAACCCAG
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consensus CAGACGCTGAATTCTGGTTTAGAGCCTGATCTTCGTCTGGGATAAGGCTAGCTAACCCAG

. : . : . : . : . : . :
rJMFF010O24+ AGTCCGATAGGTGAGGGTTGAACTCCGAATCAAGTAAAACGTTAGC
rJMSF045O23+ AGTCCGATAGGTGAGGG
rJMFF010L15+ A
rJMFF024J17+ A
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consensus AGTCCGATAGGTGAGGGTTGAACTCCGAATCAAGTAAAACGTTAGC