Alignment Contig 1223

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF047P18+ ACCCTGGAGAGTTTTTTTTTTTTTTTTACTTACAAAACGGGGAACTACATAAAAGTCACT
rJMFF051L01+ TACTTACAAAACGGGGAACTACATAAAAGTCACT
rJMFF043A21+ TACTTACAAAACGGGGAACTACATAAAAGTCACT
rJMFF044F23+ TACTTACAAAACGGGGAACTACATAAAAGTCACT
rJMFF036C21+ AGTCACT
____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTACTTACAAAACGGGGAACTACATAAAAGTCACT

. : . : . : . : . : . :
rJMFF047P18+ TCCTCACCTTCAAGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAAATTACAAGAA
rJMFF051L01+ TCCTCACCTTCAAGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAA-TTACAAGAA
rJMFF043A21+ TCCTCACCTTCAAGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAA-TTACAAGAA
rJMFF014C03+ AGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAAATTACAAGAA
rJMFF044F23+ TCCTCACCTTCAAGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAAATTACAAGAA
rJMFF036C21+ TCCTCACCTTCAAGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAAATTACAAGAA
____________________________________________________________
consensus TCCTCACCTTCAAGGGAAAGGAAGAAGAAAAAAGAATTTGAAGAAAAAAAATTACAAGAA

. : . : . : . : . : . :
rJMFF047P18+ GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT
rJMFF051L01+ GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT
rJMFF043A21+ GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT
rJMFF014C03+ GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT
rJMFF044F23+ GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT
rJMFF036C21+ GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT
____________________________________________________________
consensus GAAAATGGATACTCCCAACAAACAGGAGTTTAGGATAAAGCCATCAAATGAGCAATTCAT

. : . : . : . : . : . :
rJMFF047P18+ AGTTCAATCTACGGTTTTCTTTTGGAAAAGAAGAAGAAAAAAGAC--AAAAAAAAAATTA
rJMFF051L01+ AGTTCAATCTACGGTTTTCTTTTGGCAAAGAAGAAGAAAAAAGACCAAAAAAAAAAATTA
rJMFF043A21+ AGTTCAATCTACGGTTTTCTTTTGGAAAAGAAGAAGAAAAAAGACCAAAAAAAAAAATTA
rJMFF014C03+ AGTTCAATCTACGGTTTTCTTTTGGAAAAGAAGAAGAAAAAAGAC--AAAAAAAAAATTA
rJMFF044F23+ AGTTCAATCTACGGTTTTCTTTTGGAAAAGAAGAAGAAAAAAGAC--AAAAAAAAAATTA
rJMFF036C21+ AGTTCAATCTACGGTTTTCTTTTGGAAAAGAAGAAGAAAAAAGAC--AAAAAAAAAATTA
____________________________________________________________
consensus AGTTCAATCTACGGTTTTCTTTTGGAAAAGAAGAAGAAAAAAGAC--AAAAAAAAAATTA

. : . : . : . : . : . :
rJMFF047P18+ ACAAACAAAGAAATGCTCCTACTCTGTATTTTTACTCTGCCTTCAACACCTTATCGAGTG
rJMFF051L01+ ACCAACAAAGAAATGCTCCCACTCTGGATTTTTACTCTGCCTTCAACACCTTATCGAGGG
rJMFF043A21+ ACAAACAAAGAAATGCTCCTACTCTGGATTTTTACTCTGCCTTCAACACCTTATCGA
rJMFF014C03+ ACAAACAAAGAAATGCTCCTACTCTGTATTTTTACTCTGCCTTCAACACCTTATCGAGNG
rJMFF044F23+ ACAAACAAAGAAATGCTCCTACTCTGTATTTTTACTCTGCCTTCAACACCTTATCGAGTG
rJMFF036C21+ ACAAACAAAGAAATGCTCCTACTCTGTATTTTTACTCTGCCTTCAACACCTTATCGAGNG
____________________________________________________________
consensus ACAAACAAAGAAATGCTCCTACTCTGTATTTTTACTCTGCCTTCAACACCTTATCGAGTG

. : . : . : . : . : . :
rJMFF047P18+ TTGGAGTTCCCAAGAGTTAGCTCGAGATCATCAGTGATACATTCTTCATGAATTCGTTCT
rJMFF051L01+ GTGGAGTTCC
rJMFF014C03+ TTGGAGTTCCCAANAGTTAGCTCGANATCATCAGNGATACATTCTTCATGAATTCGTTCT
rJMFF044F23+ TTGGAGTTCCCAAGAGTTAGCTCGAGATCATCAGTGATACATTCTTCATGAATTCGTTCT
rJMFF036C21+ TTGGAGTTCCCAANAGTTANCTCGANATCATCAGTGATACATTCTTCATGAATTCGTTCT
____________________________________________________________
consensus TTGGAGTTCCCAAGAGTTAGCTCGAGATCATCAGTGATACATTCTTCATGAATTCGTTCT

. : . : . : . : . : . :
rJMFF047P18+ CCTTCCCATGGCTTAACTATACCCATAGCGTTGCTGCCAAACGCAAACTCAGCTTGAATT
rJMFF014C03+ CCTTCCCATGGCTTAACTATACCCATAGCGTTGCTGCCAAACGCAAACTCANCTTGAATT
rJMFF044F23+ CCTTCCCATGGCTTAACTATACCCATAGCGTTGCTGCCAAACGCAAACTCAGCTTGAATT
rJMFF036C21+ CCTTCCCATGGCTTAACTATACCCATAGCGTTGCTGCCAAACGCAAACTCAGCTTGAATT
____________________________________________________________
consensus CCTTCCCATGGCTTAACTATACCCATAGCGTTGCTGCCAAACGCAAACTCAGCTTGAATT

. : . : . : . : . : . :
rJMFF047P18+ GCATCTGACATGGGTACATCAGCTGAACGGTCAAGAGCTGCTGCAACTGCGGGCGAGCAT
rJMFF014C03+ GCATCTGACATGGGTACATCAGCTGAACGGTCAANAGCTGCTGCAACTGCGGGCGAGCAT
rJMFF044F23+ GCATCTGACATGGGTACATCAGCTGAACGGTCAAGAGCTGCTGCAACTGCGGGCGAGCAT
rJMFF036C21+ GCATCTGACATGGGTACATCAGCTGAACGGTCAANAGCTGCTGCAACTGCGGGCGAGCAT
____________________________________________________________
consensus GCATCTGACATGGGTACATCAGCTGAACGGTCAAGAGCTGCTGCAACTGCGGGCGAGCAT

. : . : . : . : . : . :
rJMFF047P18+ GTTCCACTCTGCCCTGGGGTCCACATTC-GTGATCCACCATTTGATAGTGGCTCCTTAAA
rJMFF014C03+ GTTCCACTCTGCCCTGGGGTCCACATTCAGNGATCCACCATTTGATAGNGGNTCCTTAGA
rJMFF044F23+ GTTCCACTCTGCCCTGGGGTCCACATTC-GTGATCCACCATTTGATAGTGGCTCCTTAAA
rJMFF036C21+ GTTCCACTCTGCCCTGGGGTCCACATTC-GNGATCCACCATTTGATAGTGGCTCCTTAAA
____________________________________________________________
consensus GTTCCACTCTGCCCTGGGGTCCACATTC-GTGATCCACCATTTGATAGTGGCTCCTTAAA

. : . : . : . : . : . :
rJMFF047P18+ GCCAAATGGGTTT
rJMFF014C03+ NCCAAATGGGTTT
rJMFF044F23+ GCCAAATGGGTTTGGTGAGACAAGGCTAAATGTTGGGGATGAAGGTCCATCTTGTGGGGT
rJMFF036C21+ GCCAAATGGGTTTGGTGAGACAAGGCTAAATGTTGGGGATGAAGGTCCATCTTGTGGGGT
____________________________________________________________
consensus GCCAAATGGGTTTGGTGAGACAAGGCTAAATGTTGGGGATGAAGGTCCATCTTGTGGGGT

. : . : . : . : . : . :
rJMFF044F23+ TTGTACACCGGAAAGCCACCCGGAATCAG
rJMFF036C21+ TTGTACACCGGAAAGCCACCCGGAATCAGGT
____________________________________________________________
consensus TTGTACACCGGAAAGCCACCCGGAATCAGGT