Alignment Contig 1222

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF047M09+ CTTTGATAGACAAAGACAATTTCCTGATATACATCTTTGTGATCATTTGCCAATTAGGAT
rJMFF019L08+ CTGATATACATCTTTGTGATCATTTGCCAATTAGGAT
rJMFF007E02+ CTGATATACATCTTTGTGATCATTTGCCAATTAGGAT
rJMSF020F16+ CATCTTTGTGATCATTTGCCAATTAGGAT
rJMSF051N13+ GATCATTTGCCAATTAGGAT
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consensus CTTTGATAGACAAAGACAATTTCCTGATATACATCTTTGTGATCATTTGCCAATTAGGAT

. : . : . : . : . : . :
rJMFF047M09+ TACAAGGTGGAATTTGACTGTGAAATCCTATGAGTGATTGCGGGATTCAAAAATTAACTA
rJMFF019L08+ TACAAGGTGGAATTTGACTGTGAAATCCTATGAGTGATTGCGGGATTCAAAAATTAACTA
rJMFF007E02+ TACAAGGTGGAATTTGACTGTGAAATCCTATGAGTGATTGCGGGATTCAAAAATTAACTA
rJMSF020F16+ TACAAGGTGGAATTTGACTGTGAAATCCTATGAGTGATTGCGGGATTCAAAAATTAACTA
rJMSF051N13+ TACAAGGTGGAATTTGACTGTGAAATCCTATGAGTGATTGCGGGATTCAAAAATTAACTA
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consensus TACAAGGTGGAATTTGACTGTGAAATCCTATGAGTGATTGCGGGATTCAAAAATTAACTA

. : . : . : . : . : . :
rJMFF047M09+ TGGATATATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT
rJMFF019L08+ TGGATATATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT
rJMFF007E02+ TGGATATATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT
rJMSF020F16+ TGGATATATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT
rJMFF031K24+ TATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT
rJMSF051N13+ TGGATATATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT
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consensus TGGATATATATTTAATTTGGGTGCTAATATTGTTGCACTTAACATTGATTTGACCAAACT

. : . : . : . : . : . :
rJMFF047M09+ GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT
rJMFF019L08+ GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT
rJMFF007E02+ GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT
rJMSF020F16+ GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT
rJMFF031K24+ GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT
rJMSF051N13+ GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT
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consensus GAATGTAAATCTTGGTAGCTATTTAGTATATGTGGATGACATTTGAAGTTGATTAGTAGT

. : . : . : . : . : . :
rJMFF047M09+ CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC
rJMFF019L08+ CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC
rJMFF007E02+ CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC
rJMSF020F16+ CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC
rJMFF031K24+ CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC
rJMSF051N13+ CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC
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consensus CATCTTCTGCTTCTTTGCTTCTATCTCTCTCAACGTTGACCTCCACTTGAAGAATGTCCC

. : . : . : . : . : . :
rJMFF047M09+ AAACAATGTCCCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA
rJMFF019L08+ AAACAATGTCTCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA
rJMFF007E02+ AAACAATGTCTCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA
rJMSF020F16+ AAACAATGTCTCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA
rJMFF031K24+ AAACAATGTCTCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA
rJMSF051N13+ AAACAATGTCTCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA
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consensus AAACAATGTCTCCATTTCTTCCAGTGTTTTCCCTCTCGTCTCTGGCATCAAAGTGAAGAA

. : . : . : . : . : . :
rJMFF047M09+ GAAGATAAACGCCACCACCGCAATTCCG
rJMFF019L08+ GAAGATAAACGCCACCACCGCAATTCCGGTGTACATGAAGAACGCGCCGCCGATGGTGAT
rJMFF007E02+ GAAGATAAACGCCACCACCGCAATTCCGGTGTACATGAAGAACGCGCCGCCGATGGTGAT
rJMSF020F16+ GAAGATAAACGCCACCACCGCAATTCCGGTGTACATGAAGAACGCGCCGCCGATGGTGAT
rJMFF031K24+ GAAGATAAACGCCACCACCGCAATTCCGGTGTACATGAAGAACGCGCCGCCGATGGTGAT
rJMSF051N13+ GAAGATAAACGCCACCACCGCAATTCCGGTGTACATGAAGAACGCGCCGCCGATGGTGAT
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consensus GAAGATAAACGCCACCACCGCAATTCCGGTGTACATGAAGAACGCGCCGCCGATGGTGAT

. : . : . : . : . : . :
rJMFF019L08+ AGCTTTGTACAGGGACAAAAACGTCATTGACACCACCCCACTCGTGACGCGGTTCGCCGC
rJMFF007E02+ AGCTTTGTACAGGGACAAAAACGTCATTGACACCACCCCACTCGTGACGCGGTTCGCCGC
rJMSF020F16+ AGCTTTGTACAGGGACAAAAACGTCATTGACACCACCCCACTCGTGACGCGGTTCGCCGC
rJMFF031K24+ AGCTTTGTACAGGGACAAAAACGTCATTGACACCACCCCACTCGTGACGCGGTTCGCCGC
rJMSF051N13+ AGCTTTGTACAGGGACAAAAACGTCATTGACACCACCCCACTCGTGACGCGGTTCGCCGC
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consensus AGCTTTGTACAGGGACAAAAACGTCATTGACACCACCCCACTCGTGACGCGGTTCGCCGC

. : . : . : . : . : . :
rJMFF019L08+ CACTCCCATACTGCAACCCGTGGCTCGGAGCCTCAACGGGAATATCTCCGAGCTGTACAC
rJMFF007E02+ CACTCCCATACTGCAACCCGTGGCTCGGAGCCTCAACGGGAATATCTCCGAGCTGTACAC
rJMSF020F16+ CACTCCCATACTGCAACCCGTGGCTCGGAGCCTCAACGGGAATATCTCCGAGCTGTACAC
rJMFF031K24+ CACTCCCATACTGCAACCCGTGGCTCGGAGCCTCAACGGGAATATCTCCGAGCTGTACAC
rJMSF051N13+ CACTCCCATACTGCAACCCGTGGCTCGGAGCCTCAACGGGAATATCTCCGAGCTGTACAC
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consensus CACTCCCATACTGCAACCCGTGGCTCGGAGCCTCAACGGGAATATCTCCGAGCTGTACAC

. : . : . : . : . : . :
rJMFF019L08+ CCAGGTAATGGGCCCCATTCCGATGGAGAAGAACGCCACGTAGGCTAAAAACCATGGCGA
rJMFF007E02+ CCAGGTAATGGGCCCCATTCCGATGGAGAAGAACGCCACGTAGGCTAAAAACCATGGCGA
rJMSF020F16+ CCAGGTAATGGGCCCCATTCCGATGGAGAAGAACGCCACGTAGGCTAAAA-CCATGGCGA
rJMFF031K24+ CCAGGTAATGGGCCCCATTCCGATGGAGAAGAACGCCACGTAGGCTAAAA-CCATGGCGA
rJMSF051N13+ CCAGGTAATGGGCCCCATTCCGATGGAGAAGAACGCCACGTAGGCTAAAA-CCATGGCGA
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consensus CCAGGTAATGGGCCCCATTCCGATGGAGAAGAACGCCACGTAGGCTAAAA-CCATGGCGA

. : . : . : . : . : . :
rJMFF019L08+ TGCTCAGTGTCACCGCCCACGGGACCTTGTGATCCGAGTGGTCAATGATGGTCAACGCGA
rJMFF007E02+ TGCTCAGTGTCACCGCCCACGGGACCTTGTGATCCGAGTGGTCAATGATGGTCAACGCGA
rJMSF020F16+ TGCTCAGTGTCACCGCCCACGGGACCTTGTGATCCGAGTGGTCAATGATGGTCAACGCGA
rJMFF031K24+ TGCTCAGTGTCACCGCCCACGGGACCTTGTGATCCGAGTGGTCAATGATGGTCAACGCGA
rJMSF051N13+ TGCTCAGTGTCACCGCCCACGGGACCTTGTGATCCGAGTGGTCAATGATGGTCAACGCGA
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consensus TGCTCAGTGTCACCGCCCACGGGACCTTGTGATCCGAGTGGTCAATGATGGTCAACGCGA

. : . : . : . : . : . :
rJMFF019L08+ TGGCAAGTAGCAGCATCGACGCGATCATGCCGCC-GACGCTGGATAAGAGTAACTTCCGC
rJMFF007E02+ TGGCAAGTAGCAGCATCGACGCGATCATGCCGCC-GACGCTGGATAAGAGTAACTTCCGC
rJMSF020F16+ TGGCAAGTAGCAGCATCGACGCGATCATGCCGCC-GACGCTGGATAAGAGTAACTTCCGC
rJMFF031K24+ TGGCAAGTAGCAGCATCGACGCGATCATGCCGCCNGACGCTGGATAAGAGTAACTTCCGC
rJMSF051N13+ TGGCAAGTAGCAGCATCGACGCGATCATGCCGCC-GACGCTGGATAAGAGTAACTTCCGC
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consensus TGGCAAGTAGCAGCATCGACGCGATCATGCCGCC-GACGCTGGATAAGAGTAACTTCCGC

. : . : . : . : . : . :
rJMFF019L08+ CGCCCGAACCGGTCAAGTGTGAACGTGGCGATCAATATGAACAACGTTTTCACGAACCCG
rJMFF007E02+ CGCCCGAACCGGTCAAGTGTGAACGTGGCGATCAATATGAACAACGTTTTCACGAACCCG
rJMSF020F16+ CGCCCGAACCGGTCAAGTGTGAACGTGGCGATCAATATGAACAACGTTTTCACGAACCCG
rJMFF031K24+ CGCCCGA
rJMSF051N13+ CGCCCGAACCG
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consensus CGCCCGAACCGGTCAAGTGTGAACGTGGCGATCAATATGAACAACGTTTTCACGAACCCG

. : . : . : . : . : . :
rJMFF019L08+ AC
rJMFF007E02+ ACCGC
rJMSF020F16+ ACNGCCACCGTGCACAGCAGTTTCTTGTGG
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consensus ACCGCCACCGTGCACAGCAGTTTCTTGTGG