Alignment Contig 1208

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF045L23+ AAAATTCAAATTTCACCAGTGGTGAGGACTATGATAAGAATAGAACTCAAAACCATTTGC
rJMFF040L12+ GGTGAGGACTATGATAAGAATAGAACTCAAAACCATTTGC
rJMFF028M06+ GGTGAGGACTATGATAAGAATAGAACTCAAAACCATTTGC
rJMFF011B04+ GGTGAGGACTATGATAAGAATAGAACTCAAAACCATTTGC
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consensus AAAATTCAAATTTCACCAGTGGTGAGGACTATGATAAGAATAGAACTCAAAACCATTTGC

. : . : . : . : . : . :
rJMFF045L23+ AATAGTTCTAAAGGGCCACATAATGGAGAAGGGGAAAGCAAATATAAACTCAGTTCCAAA
rJMFF040L12+ AATAGTTCTAAAGGGCCACATAATGGAGAAGGGGAAAGCAAATATAAACTCAGTTCCAAA
rJMFF028M06+ AATAGTTCTAAAGGGCCACATAATGGAGAAGGGGAAAGCAAATATAAACTCAGTTCCAAA
rJMFF011B04+ AATAGTTCTAAAGGGCCACATAATGGAGAAGGGGAAAGCAAATATAAACTCAGTTCCAAA
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consensus AATAGTTCTAAAGGGCCACATAATGGAGAAGGGGAAAGCAAATATAAACTCAGTTCCAAA

. : . : . : . : . : . :
rJMFF045L23+ AACTAAAGAACATCAGAGTTGTTAAAACATCACCAAAACCCAACATCAAATCCACTGTTC
rJMFF040L12+ AACTAAAGAACATCAGAGTTGTTAAAACATCACCAAAACCCAACATCAAATCCACTGTTC
rJMFF028M06+ AACTAAAGAACATCAGAGTTGTTAAAACATCACCAAAACCCAACATCAAATCCACTGTTC
rJMFF011B04+ AACTAAAGAACATCAGAGTTGTTAAAACATCACCAAAACCCAACATCAAATCCACTGTTC
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consensus AACTAAAGAACATCAGAGTTGTTAAAACATCACCAAAACCCAACATCAAATCCACTGTTC

. : . : . : . : . : . :
rJMFF045L23+ TTTACACCTTCAGCTAAGTACCTAACCTTAAATTTTATGTACACCGCAAAAGCAGCCCAA
rJMFF040L12+ TTTACACCTTCAGCTAAGTACCTAACCTTAAATTTTATGTACACCGCAAAAGCAGCCCAA
rJMFF028M06+ TTTACACCTTCAGCTAAGTACCTAACCTTAAATTTTATGTACACCGCAAAAGCAGCCCAA
rJMFF011B04+ TTTACACCTTCAGCTAAGTACCTAACCTTAAATTTTATGTACACCGCAAAAGCAGCCCAA
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consensus TTTACACCTTCAGCTAAGTACCTAACCTTAAATTTTATGTACACCGCAAAAGCAGCCCAA

. : . : . : . : . : . :
rJMFF045L23+ CCTGGACAGAGCTCCATGTTTCATTTGAAACAGGTATACTATACTAAGCCACCTACAAAC
rJMFF040L12+ CCTGGACAGAGCTCCATGTTTCATTTGAAACAGGTATACTATACTAAGCCACCTACAAAC
rJMFF028M06+ CCTGGACAGAGCTCCATGTTTCATTTGAAACAGGTATACTATACTAAGCCACCTACAAAC
rJMFF011B04+ CCTGGACAGAGCTCCATGTTTCATTTGAAACAGGTATACTATACTAAGCCACCTACAAAC
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consensus CCTGGACAGAGCTCCATGTTTCATTTGAAACAGGTATACTATACTAAGCCACCTACAAAC

. : . : . : . : . : . :
rJMFF045L23+ CAAACTTTCACACAAAACCTAAGCTCAATCCAAGAAAGAAGATTCAACCAATGCTGGGTG
rJMFF040L12+ CAAACTTTCACACAAAACCTAAGCTCAATCCAAGAAAGAAGATTCAACCAATGCTGGGTG
rJMFF028M06+ CAAACTTTCACACAAAACCTAAGCTCAATCCAAGAAAGAAGATTCAACCAATGCTGGGTG
rJMFF011B04+ CAAACTTTCACACAAAACCTAAGCTCAATCCAAGAAAGAAGATTCAACCAATGCTGGGTG
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consensus CAAACTTTCACACAAAACCTAAGCTCAATCCAAGAAAGAAGATTCAACCAATGCTGGGTG

. : . : . : . : . : . :
rJMFF045L23+ CGATAAGGCGGTGGGCTGGTCGTATTGAACTGTTAAGCGCAGCTTTAATTCTACTGAACA
rJMFF040L12+ CGATAAGGCGGTGGGCTGGTCGTATTGAACTGTTAAGCGCAGCTTTAATTCTACTGAACA
rJMFF028M06+ CGATAAGGCGGTGGGCTGGTCGTATTGAACTGTTAAGCGCAGCTTTAATTCTACTGAACA
rJMFF011B04+ CGATAAGGCGGTGGGCTGGTCGTATTGAACTGTTAAGCGCAGCTTTAATTCTACTGAACA
____________________________________________________________
consensus CGATAAGGCGGTGGGCTGGTCGTATTGAACTGTTAAGCGCAGCTTTAATTCTACTGAACA

. : . : . : . : . : . :
rJMFF045L23+ C
rJMFF040L12+ CCACTTTCAAAGGAACGCATGCTATTGTGGGGCCTCTAAGCTGTTGTACTGTGGGGTTCT
rJMFF028M06+ CCACTTTCAAAGGAACGCATGCTATTGTGGGGCCTCTAAGCTGTTGTACTGTGGGGTTCT
rJMFF011B04+ CCACTTTCAAAGGAACGCATGCTATTGTGGGGCCTCTAAGCTGTTGTACTGTGGGGTTCT
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consensus CCACTTTCAAAGGAACGCATGCTATTGTGGGGCCTCTAAGCTGTTGTACTGTGGGGTTCT

. : . : . : . : . : . :
rJMFF040L12+ TCTCTCGATTTTGCTTGCGAGGACCAGTCAATGAAGACAACCTACGAACCTTCTTCGAGA
rJMFF028M06+ TCTCTCGATTTTGCTTGCGAGGACCAGTCAATGAAGACAACCTACGAACCTTCTTCGAGA
rJMFF011B04+ TCTCTCGATTTTGCTTGCGAGGACCAGTCAATGAAGACAACCTACGAACCTTCTTCGAGA
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consensus TCTCTCGATTTTGCTTGCGAGGACCAGTCAATGAAGACAACCTACGAACCTTCTTCGAGA

. : . : . : . : . : . :
rJMFF040L12+ GCATGCTTTCTTTCTTTGATTTTGATGACTTAGTTGATGAGGCGCGAGGTTGAAGCCTAC
rJMFF028M06+ GCATGCTTTCTTTCTTTGATTTTGATGACTTAGTTGATGAGGCGCGAGGTTGAAGCCTAC
rJMFF011B04+ GCATGCTTTCTTTCTTTGATTTTGATGACTTAGTTGATGAGGCGCGAGGTTGAAGCCTAC
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consensus GCATGCTTTCTTTCTTTGATTTTGATGACTTAGTTGATGAGGCGCGAGGTTGAAGCCTAC

. : . : . : . : . : . :
rJMFF040L12+ CACCAAAACTTAGTTTCGTTTTGTTGACCATATCGACACCTTTTGGAGCAGAATCATCAT
rJMFF028M06+ CACCAAAACTTAGTTTCGTTTTGTTGACCATATCGACACCTTTTGGAGCAGAATCATCAT
rJMFF011B04+ CACCAAAACTTAGTTTCGTTTTGTTGACCATATCGACACCTTTTGGAGCAGAATCATCAT
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consensus CACCAAAACTTAGTTTCGTTTTGTTGACCATATCGACACCTTTTGGAGCAGAATCATCAT

. : . : . : . : . : . :
rJMFF040L12+ CCAAGTCGTGACAGTTGCTAGCGCTCACGAGCAGTTGATCACAGAAGCCATCGTCTAAAA
rJMFF028M06+ CCAAGTCGTGACAGTTGCTAGCGCTCACGAGCAGTTGATCACAGAAGCCATCGTCTAAAA
rJMFF011B04+ CCAAGTCGTGACAGTTGCTAGCGCTCACGAGCAGTTGATCACAGAAGCCATCGTCTAAAA
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consensus CCAAGTCGTGACAGTTGCTAGCGCTCACGAGCAGTTGATCACAGAAGCCATCGTCTAAAA

. : . : . : . : . : . :
rJMFF040L12+ CTTCAACAGCAAGCCGGTGACCCGTGATANGCTGGCCGTTTAATTTGCTCATTAATGAAA
rJMFF028M06+ CTTCAACAGCAAGCC
rJMFF011B04+ CTTCAACAGCAAGCCGGTGACCCGTGATAGGCTGGCCGTTTAATTTGCTCATTAAT
____________________________________________________________
consensus CTTCAACAGCAAGCCGGTGACCCGTGATAGGCTGGCCGTTTAATTTGCTCATTAATGAAA

. : . : . : . : . : . :
rJMFF040L12+ TGTAANGGGATATGGCGTGTGCGGTA
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consensus TGTAANGGGATATGGCGTGTGCGGTA