Alignment Contig 1206

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF045I24+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTTAGAACAATGTAAATTAGA
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consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTTAGAACAATGTAAATTAGA

. : . : . : . : . : . :
rJMFF045I24+ ATAGATGAAATATCATTCATTAGTTCGCTAAATCCTTTCAGCAAACCAAACTCTACCTTT
rJMSF015M06+ GTTCGCTAAATCCTTTCAGCAAACCAAACTCTACCTTT
rJMFF003O01+ TCATTCATTAGTTCGCTAAATCCTTTCAGCAAACCAAACTCTACCTTT
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consensus ATAGATGAAATATCATTCATTAGTTCGCTAAATCCTTTCAGCAAACCAAACTCTACCTTT

. : . : . : . : . : . :
rJMFF045I24+ TTCAAGGTTAATAAACAGCAATTGGATTGCATTCTACTAGAAATACAGTTTAGAAAACAA
rJMSF015M06+ TTCAAGGTTAATAAACAGCAATTGGATTGCATTCTACTAGAAATACAGTTTAGAAAACAA
rJMFF003O01+ TTCAAGGTTAATAAACAGCAATTGGATTGCATTCTACTAGAAATACAGTTTAGAAAACAA
rJMSF019C11+ AGGTTAATAAACAGCAATTGGATTGCATTCTACTAGAAATACAGTTTAGAAAACAA
rJMFF006L18+ AGGTTAATAAACAGCAATTGGATTGCATTCTACTAGAAATACAGTTTAGAAAACAA
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consensus TTCAAGGTTAATAAACAGCAATTGGATTGCATTCTACTAGAAATACAGTTTAGAAAACAA

. : . : . : . : . : . :
rJMFF045I24+ ATATATAAGCTTTCAGGAGGAGTAATTCAGTTTCTGGGTAAGCTATTTCTAGTACTGCAC
rJMSF015M06+ ATATATAAGCTTTCAGGAGGAGTAATTCAGTTTCTGGGTAAGCTATTTCTAGTACTGCAC
rJMFF003O01+ ATATATAAGCTTTCAGGAGGAGTAATTCAGTTTCTGGGTAAGCTATTTCTAGTACTGCAC
rJMSF019C11+ ATATATAAGCTTTCAGGAGGAGTAATTCAGTTTCTGGGTAAGCTATTTCTAGTACTGCAC
rJMFF006L18+ ATATATAAGCTTTCAGGAGGAGTAATTCAGTTTCTGGGTAAGCTATTTCTAGTACTGCAC
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consensus ATATATAAGCTTTCAGGAGGAGTAATTCAGTTTCTGGGTAAGCTATTTCTAGTACTGCAC

. : . : . : . : . : . :
rJMFF045I24+ AAGACTAGGGGATCTCTGAACTATCATGAATGTGCTATTTCTAGTGTGAACAACACATCT
rJMSF015M06+ AAGACTAGGTGATCTCTGAACTATCATGAATGTGCTATTTCTAGTGTGAACAACACATCT
rJMFF003O01+ AAGACTAGGGGATCTCTGAACTATCATGAATGTGCTATTTCTAGTGTGAACAACACATCT
rJMSF019C11+ AAGACTAGGGGATCTCTGAACTATCATGAATGTGCTATTTCTAGTGTGAACAACACATCT
rJMFF006L18+ AAGACTAGGGGATCTCTGAACTATCATGAATGTGCTATTTCTAGTGTGAACAACACATCT
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consensus AAGACTAGGGGATCTCTGAACTATCATGAATGTGCTATTTCTAGTGTGAACAACACATCT

. : . : . : . : . : . :
rJMFF045I24+ ATGGAGGATCAGTATAATACTACCAATGTCTTTTCGCTCCAAGTGGAACTGTATTAGATC
rJMSF015M06+ ACGGAGGATCAGTATAATACTACCAATGTCTTTTCGCTCCAAGTGGAACTGTATTAGATC
rJMFF003O01+ ATGGAGGATCAGTATAATACTACCAATGTCTTTTCGCTCCAAGTGGAACTGTATTAGATC
rJMSF019C11+ ATGGAGGATCAGTATAATACTACCAATGTCTTTTCGCTCCAAGTGGAACTGTATTAGATC
rJMFF006L18+ ATGGAGGATCAGTATAATACTACCAATGTCTTTTCGCTCCAAGTGGAACTGTATTAGATC
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consensus ATGGAGGATCAGTATAATACTACCAATGTCTTTTCGCTCCAAGTGGAACTGTATTAGATC

. : . : . : . : . : . :
rJMFF045I24+ CCGAAATCGACCCACGGTTTCCAAAGCCTCCCCGCCCTCTAGAGCGGAAGTTGTTTCCTC
rJMSF015M06+ CCGAAATCGACCCACGGTTTCCAAAGCCTCCCCGCCCTCTAGAGCGGAAGTTGTTTCCTC
rJMFF003O01+ CCGAAATCGACCCACGGTTTCCAAAGCCTCCCCGCCCTCTAGAGCGGAAGTTGTTTCCTC
rJMSF019C11+ CCGAAATCGACCCACGGTTTCCAAAGCCTCCCCGCCCTCTAGAGCGGAAGTTGTTTCCTC
rJMFF006L18+ CCGAAATCGACCCACGGTTTCCAAAGCCTCCCCGCCCTCTAGAGCGGAAGTTGTTTCCTC
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consensus CCGAAATCGACCCACGGTTTCCAAAGCCTCCCCGCCCTCTAGAGCGGAAGTTGTTTCCTC

. : . : . : . : . : . :
rJMFF045I24+ CAGAGCTGAAACCACCGGGGCATGCCAATGCTGACAACTGAGGGGGAACAATTTGACCTG
rJMSF015M06+ CAGAGCTGAAACCACCGGGGCATGCCAATGCTGACAACTGAGGGGGAACAATTTGACCTG
rJMFF003O01+ CAGAGCTGAAACCACCGGGGCATGCCAATGCTGACAACTGAGGGGGAACAATTTGACCTG
rJMSF019C11+ CAGAGCTGAAACCACCGGGGCATGCCAATGCTGACAACTGAGGGGGAACAATTTGACCTG
rJMFF006L18+ CAGAGCTGAAACCACCGGGGCATGCCAATGCTGACAACTGAGGGGGAACAATTTGACCTG
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consensus CAGAGCTGAAACCACCGGGGCATGCCAATGCTGACAACTGAGGGGGAACAATTTGACCTG

. : . : . : . : . : . :
rJMFF045I24+ CTTGCTGAAGGATCTTAACAAGTTCTCTGGCAAACTTTGCATTTCCATGGGTAAAAAATG
rJMSF015M06+ CTTGCTGAAGGATCTTAACAAGTTCTCTGGCAAACTTTGCATTTCCATGGGTAAAAAATG
rJMFF003O01+ CTTGCTGAAGGATCTTAACAAGTTCTCTGGCAAACTTTGCATTTCCATGGGTAAAAAATG
rJMSF019C11+ CTTGCTGAAGGATCTTAACAAGTTCTCTGGCAAACTTTGCATTTCCATGGGTAAAAAATG
rJMFF006L18+ CTTGCTGAAGGATCTTAACAAGTTCTCTGGCAAACTTTGCATTTCCATGGGTAAAAAATG
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consensus CTTGCTGAAGGATCTTAACAAGTTCTCTGGCAAACTTTGCATTTCCATGGGTAAAAAATG

. : . : . : . : . : . :
rJMFF045I24+ TAAATGCAGTTCCCTTGGCACCCGCCCGACCAGTTCTTCCTATCCTATGAACATAATCCT
rJMSF015M06+ TAAATGCAGTTCCCTTGGCACCCGCCCGACCAGTTCTTCCTATCCTATGAACATAATCCT
rJMFF003O01+ TAAATGCAGTTCCCTTGGCACCCGCCCGACCAGTTCTTCCTATCCTATGAACATAATCCT
rJMSF019C11+ TAAATGCAGTTCCCTTGGCACCCGCCCGACCAGTTCTTCCTATCCTATGAACATAATCCT
rJMFF006L18+ TAAATGCAGTTCCCTTGGCACCCGCCCGACCAGTTCTTCCTATCCTATGAACATAATCCT
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consensus TAAATGCAGTTCCCTTGGCACCCGCCCGACCAGTTCTTCCTATCCTATGAACATAATCCT

. : . : . : . : . : . :
rJMFF045I24+ CAAGACNAGTAGGAAAATCATAATTGATTACACATTTTATGTCCTTCACATCA
rJMSF015M06+ CAAGACAAGTAGGAAAATCATAATTGATTACACATTTTATGTCCTTCACATC
rJMFF003O01+ CAAGACAAGTAGGAAAATCATAATTGATTACACATTTTATGTCCTTCACATC
rJMSF019C11+ CAAGACAAGTAGGAAAATCATAATTGATTACACATTTTATGTCCTTCACATCTACAAAAG
rJMFF006L18+ CAAGACAAGTAGGAAAATCATAATTGATTACACATTTTATGTCCTTCACATC
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consensus CAAGACAAGTAGGAAAATCATAATTGATTACACATTTTATGTCCTTCACATCAACAAAAG

. : . : . : . : . : . :
rJMSF019C11+ AATAACAATCATCAGATCAAGAACACACTGAAAAAAAATAAAATGATCACACATACACTC
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consensus AATAACAATCATCAGATCAAGAACACACTGAAAAAAAATAAAATGATCACACATACACTC

. : . : . : . : . : . :
rJMSF019C11+ GCAACTTGCTACCTTATCCCTGCACTAATAAGATCTTAGTGATTGTGTGTAAGATAATAC
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consensus GCAACTTGCTACCTTATCCCTGCACTAATAAGATCTTAGTGATTGTGTGTAAGATAATAC

. : . : . : . : . : . :
rJMSF019C11+ AGTCCTAATATATTGTGCCCACCTTAACTTTGCAGGGATAAGGAGCAGCTCCACCACCAC
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consensus AGTCCTAATATATTGTGCCCACCTTAACTTTGCAGGGATAAGGAGCAGCTCCACCACCAC

. : . : . : . : . : . :
rJMSF019C11+ AACTCCAAAAATGAAATAATGAATCATTAAATAATCTTGTGAGTCAACCGGGCTGTCACG
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consensus AACTCCAAAAATGAAATAATGAATCATTAAATAATCTTGTGAGTCAACCGGGCTGTCACG

. : . : . : . : . : . :
rJMSF019C11+ A
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consensus A