Alignment Contig 11999

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF022D02- TTTTAACGACTAAATAGATTATGGGTGATTTTATTTCATAACATGGGCTACATAATAGTG
rJMSF022D02+ TGGGCTACATAATAGTG
rJMSF019M15+ TGGGCTACATAATAGTG
rJMSF022M16+ CATAATAGTG
____________________________________________________________
consensus TTTTAACGACTAAATAGATTATGGGTGATTTTATTTCATAACATGGGCTACATAATAGTG

. : . : . : . : . : . :
JMSF022D02- AACTAGGCCCATTTTTGCATACATTTATTTATGGATAGGATATATCCACTATAATAGATA
rJMSF022D02+ AACTAGGCCCATTTTTGCATACATTTATTTATGGATAGGATATATCCACTATAATAGATA
rJMSF019M15+ AACTAGGCCCATTTTTGCATACATTTATTTATGGATAGGATATATCCACTATAATAGATA
rJMSF022M16+ AACTAGGCCCATTTTTGCATACATTTATTTATGGATAGGATATATCCACTATAATAGATA
rJMFF007P02+ TAGATA
rJMFF029B20+ TATAATAGATA
____________________________________________________________
consensus AACTAGGCCCATTTTTGCATACATTTATTTATGGATAGGATATATCCACTATAATAGATA

. : . : . : . : . : . :
JMSF022D02- ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT
rJMSF022D02+ ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT
rJMSF019M15+ ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT
rJMSF022M16+ ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT
rJMFF007P02+ ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT
rJMFF029B20+ ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT
____________________________________________________________
consensus ATTTATTTTATTGCATGGACTACATAGAAAAAAACTAGATAGGCTCATCCGTGCATACGT

. : . : . : . : . : . :
JMSF022D02- TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG
rJMSF022D02+ TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG
rJMSF019M15+ TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG
rJMSF022M16+ TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG
rJMFF007P02+ TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG
rJMFF029B20+ TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG
____________________________________________________________
consensus TTAGAGATCAGAGACCGAACGTGCTTCCCAAATTACAGCTATTGGACTAGTAACAAGATG

. : . : . : . : . : . :
JMSF022D02- CGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG
rJMSF022D02+ CGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG
rJMSF019M15+ TGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG
rJMSF022M16+ TGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG
rJMFF007P02+ TGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG
rJMFF029B20+ TGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG
____________________________________________________________
consensus TGTCCCATCACTCCAGCTTAAAGAACCGAATGAAGGATCAGCAAATTGCGGAACGCTTTG

. : . : . : . : . : . :
JMSF022D02- AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGGTGA
rJMSF022D02+ AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGGTGA
rJMSF019M15+ AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGATGA
rJMSF022M16+ AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGGTGA
rJMFF007P02+ AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGGTGA
rJMFF029B20+ AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGGTGA
____________________________________________________________
consensus AAAAGTTACCTCATAAGATAGTTTATCGATTCTGTCACTAAACACCAGCCTACTCGGTGA

. : . : . : . : . : . :
JMSF022D02- CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC
rJMSF022D02+ CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC
rJMSF019M15+ CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC
rJMSF022M16+ CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC
rJMFF007P02+ CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC
rJMFF029B20+ CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC
____________________________________________________________
consensus CACATTCACACGAACATTTGAGGGCGTACGCACTGTTACCTGATAAGCAACATTCTTCAC

. : . : . : . : . : . :
JMSF022D02- CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC
rJMSF022D02+ CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC
rJMSF019M15+ CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC
rJMSF022M16+ CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC
rJMFF007P02+ CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC
rJMFF029B20+ CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC
____________________________________________________________
consensus CTTCCCTACGTTTTTAACAGTTCTTTTGTATGTTATGGTTTGGAGATTGTTTTTGAAAAC

. : . : . : . : . : . :
JMSF022D02- AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC
rJMSF022D02+ AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC
rJMSF019M15+ AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC
rJMSF022M16+ AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC
rJMFF007P02+ AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC
rJMFF029B20+ AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC
____________________________________________________________
consensus AACTGCAAAGGAAGGGTAATTTAGCGCGCCTGGATTACCCAAATTCCGATTTCTGCAATC

. : . : . : . : . : . :
JMSF022D02- CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA
rJMSF022D02+ CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA
rJMSF019M15+ CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA
rJMSF022M16+ CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA
rJMFF007P02+ CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA
rJMFF029B20+ CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA
____________________________________________________________
consensus CACCAGAGGAGAATTCCGCAAGAACAGGGCAATTTTCTGGCTATCATACCCAATGGTACA

. : . : . : . : . : . :
JMSF022D02- TAGAAAATCCACATAATCATTAAC
rJMSF022D02+ TAGAAAATCCACATAATCATTAAC
rJMSF019M15+ TAGAAAATCCACATAATCATTAACTCCGGTATCATAGACCAGACCCGGATCTGCTGCGTT
rJMSF022M16+ TAGAAAATCCACATAATCATTAACTCCGGTATCATAGACCAGACCCGGATCTGCTGCGTT
rJMFF007P02+ TAGAAAATCCACATAATCATTAACTCCGGTATCATAGACCAGACCCGGATCTGCTGCGTT
rJMFF029B20+ TAGAAAATCCACATAATCATTAACTCCGGTATCATAGACCAGACCCGGATCTGCTGCGTT
____________________________________________________________
consensus TAGAAAATCCACATAATCATTAACTCCGGTATCATAGACCAGACCCGGATCTGCTGCGTT

. : . : . : . : . : . :
rJMSF019M15+ GGTTGGATCAACGTGTCCAGATCCATGAGCATGGGGGG-TGGATGGGTAACCAGTATAAA
rJMSF022M16+ GGTTGGATCAACGTGTCCAGATCCATGAGCATGGGGGG-TGGATGGGTAACCAGTATAAA
rJMFF007P02+ GGTTGGATCAACGTGNCCAGATCCATGAGCATGGGGGG-TGGATGGGTAACCAGTATAAA
rJMFF029B20+ GGTTGGATCAACGTGTCCAGATCCATGAGCATGGGGGGGTGGATGGGTAACCAGTATAAA
____________________________________________________________
consensus GGTTGGATCAACGTGTCCAGATCCATGAGCATGGGGGG-TGGATGGGTAACCAGTATAAA

. : . : . : . : . : . :
rJMSF019M15+ GATCTATGAGAGTACTCCTCCCGGAATTATCCAGAGTGTAAGTAGTTGTCATGAGCGCAG
rJMSF022M16+ GATCTATGAGAGTACTCCTCCCGGAATTATCCAGAGTGTAAGTAGTTGTCATGAGCGCAG
rJMFF007P02+ GATCTATGAGAGTACTCCTCCCGGAATTATCC
rJMFF029B20+ GATCTATGAGAGTACTCCTCCCGGAATTATCCAGAGTGTAAGTAGTTGTCATGAGCGCAG
____________________________________________________________
consensus GATCTATGAGAGTACTCCTCCCGGAATTATCCAGAGTGTAAGTAGTTGTCATGAGCGCAG

. : . : . : . : . : . :
rJMSF019M15+ ACTTG
rJMSF022M16+ ACTTGGATGGCAGCGGGGCTCCAACTTGGAT
rJMFF029B20+ ACTTG
____________________________________________________________
consensus ACTTGGATGGCAGCGGGGCTCCAACTTGGAT