Alignment Contig 1190

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF043I14+ GGTCATCGAACACTAATTTTTAATTGATAGGAAATTAAAAGTGAAAACAGAAGATAACAG
rJMFF025O04+ TTGATAGGAAATTAAAAGTGAAAACAGAAGATAACAG
rJMFF022G01+ AGAAGATAACAG
rJMFF007I04+ AGAAGATAACAG
rJMFF005A24+ TTGATAGGAAATTAAAAGTGAAAACAGAAGATAACAG
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consensus GGTCATCGAACACTAATTTTTAATTGATAGGAAATTAAAAGTGAAAACAGAAGATAACAG

. : . : . : . : . : . :
rJMFF043I14+ GGACTAATTTTAAAGAGAGACCAGACATTAGATATAATTTGGAGATTATTTATTGTCTAG
rJMFF025O04+ GGACTAATTTTAAAGAGAGACCAGACATTAGATATAATTTGGAGATTATTTATTGTCTAG
rJMFF022G01+ GGACTAATTTTAAAGAGAGACCAGACATTAGATATAATTTGGAGATTATTTATTGTCTAG
rJMFF007I04+ GGACTAATTTTAAAGAGAGACCAGACATTAGATATAATTTGGAGATTATTTATTGTCTAG
rJMFF005A24+ GGACTAATTTTAAAGAGAGACCAGACATTAGATATAATTTGGAGATTATTTATTGTCTAG
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consensus GGACTAATTTTAAAGAGAGACCAGACATTAGATATAATTTGGAGATTATTTATTGTCTAG

. : . : . : . : . : . :
rJMFF043I14+ ACGGTTGAAGATGATGAGACTGATCTTCTTACTCTACCCAGGCAGTTGTCTTTAGGCCTG
rJMFF025O04+ ACGGTTGAAGATGATGAGACTGATCTTCTTACTCTACCCAGGCAGTTGTCTTTAGGCCTG
rJMFF022G01+ ACGGTTGAAGATGATGAGACTGATCTTCTTACTCTACCCAGGCAGTTGTCTTTAGGCCTG
rJMFF007I04+ ACGGTTGAAGATGATGAGACTGATCTTCTTACTCTACCCAGGCAGTTGTCTTTAGGCCTG
rJMFF005A24+ ACGGTTGAAGATGATGAGACTGATCTTCTTACTCTACCCAGGCAGTTGTCTTTAGGCCTG
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consensus ACGGTTGAAGATGATGAGACTGATCTTCTTACTCTACCCAGGCAGTTGTCTTTAGGCCTG

. : . : . : . : . : . :
rJMFF043I14+ GTGTGTGGTAAATACATAAGTGGGCAGTCTGGATTTTTCCTCTCTAACTCGTAACCCAGT
rJMFF025O04+ GTGTGTGGTAAATACATAAGTGGGCAGTCTGGATTTTTCCTCTCTAACTCGTAACCCAGT
rJMFF022G01+ GTGTGTGGTAAATACATAAGTGGGCAGTCTGGATTTTTCCTCTCTAACTCGTAACCCAGT
rJMFF007I04+ GTGTGTGGTAAATACATAAGTGGGCAGTCTGGATTTTTCCTCTCTAACTCGTAACCCAGT
rJMFF005A24+ GTGTGTGGTAAATACATAAGTGGGCAGTCTGGATTTTTCCTCTCTAACTCGTAACCCAGT
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consensus GTGTGTGGTAAATACATAAGTGGGCAGTCTGGATTTTTCCTCTCTAACTCGTAACCCAGT

. : . : . : . : . : . :
rJMFF043I14+ AGAAAATAGTGAAGAAAAATGGAGATTTCGAGTTTGGCAAGGTCGTTTCCTGGGCACAAT
rJMFF025O04+ AGAAAATAGTGAAGAAAAATGGAGATTTCGAGTTTGGCAAGGTCGTTTCCTGGGCACAAT
rJMFF022G01+ AGAAAATAGTGAAGAAAAATGGAGATTTCGAGTTTGGCAAGGTCGTTTCCTGGGCACAAT
rJMFF007I04+ AGAAAATAGTGAAGAAAAATGGAGATTTCGAGTTTGGCAAGGTCGTTTCCTGGGCACAAT
rJMFF005A24+ AGAAAATAGTGAAGAAAAATGGAGATTTCGAGTTTGGCAAGGTCGTTTCCTGGGCACAAT
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consensus AGAAAATAGTGAAGAAAAATGGAGATTTCGAGTTTGGCAAGGTCGTTTCCTGGGCACAAT

. : . : . : . : . : . :
rJMFF043I14+ CTGCTTCCTGCTCCAAAGGGAAGAAATGCTCCTGCTCTTGGTGTAAAATTATCCCATCTG
rJMFF025O04+ CTGCTTCCTGCTCCAAAGGGAAGAAATGCTCCTGCTCTTGGTGTAAAATTATCCCATCTG
rJMFF022G01+ CTGCTTCCTGCTCCAAAGGGAAGAAATGCTCCTGCTCTTGGTGTAAAATTATCCCATCTG
rJMFF007I04+ CTGCTTCCTGCTCCAAAGGGAAGAAATGCTCCTGCTCTTGGTGTAAAATTATCCCATCTG
rJMFF005A24+ CTGCTTCCTGCTCCAAAGGGAAGAAATGCTCCTGCTCTTGGTGTAAAATTATCCCATCTG
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consensus CTGCTTCCTGCTCCAAAGGGAAGAAATGCTCCTGCTCTTGGTGTAAAATTATCCCATCTG

. : . : . : . : . : . :
rJMFF043I14+ GAAGGATTGAATGTTAATGGGTCTTCATATATCTCCTCATCTAAGTGCACACCTCTAAAC
rJMFF025O04+ GAAGGATTGAATGTTAATGGGTCTTCATATATCTCCTCATCTAAGTGCACACCTCTAAAC
rJMFF022G01+ GAAGGATTGAATGTTAATGGGTCTTCATATATCTCCTCATCTAAGTGCACACCTCTAAAC
rJMFF007I04+ GAAGGATTGAATGTTAATGGGTCTTCATATATCTCCTCATCTAAGTGCACACCTCTAAAC
rJMFF005A24+ GAAGGATTGAATGTTAATGGGTCTTCATATATCTCCTCATCTAAGTGCACACCTCTAAAC
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consensus GAAGGATTGAATGTTAATGGGTCTTCATATATCTCCTCATCTAAGTGCACACCTCTAAAC

. : . : . : . : . : . :
rJMFF043I14+ CACACCAAAACTTTCCATCCCTCTGGAATTGTATATCCCGAAACATTCACATCCTTCTTT
rJMFF025O04+ CACACCAAAACTTTCCATCCCTCTGGAATTGTATATCCCGAAACATTCACATCCTTCTTT
rJMFF022G01+ CACACCAAAACTTTCCATCCCTCTGGAATTGTATATCCCGAAACATTCACATCCTTCTTT
rJMFF007I04+ CACACCAAAACTTTCCATCCCTCTGGAATTGTATATCCCGAAACATTCACATCCTTCTTT
rJMFF005A24+ CACACCAAAACTTTCCATCCCTCTGGAATTGTATATCCCGAAACATTCACATCCTTCTTT
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consensus CACACCAAAACTTTCCATCCCTCTGGAATTGTATATCCCGAAACATTCACATCCTTCTTT

. : . : . : . : . : . :
rJMFF043I14+ GCCTCTCGGAACACGGTGAGAGAGAACGTTACCAGACGAAGTGTTTCGTCAATCACCTTA
rJMFF025O04+ GCCTCTCGGAACACGGTGAGAGAGAACGTTACCAGACGAAGTGTTTCGTCAATCACCTTA
rJMFF022G01+ GCCTCTCGGAACACGGTGAGAGAGAACGTTACCAGACGAAGTGTTTCGTCAATCACCTTA
rJMFF007I04+ GCCTCTCGGAACACGGTGAGAGAGAACGTTACCAGACGAAGTGTTTCGTCAATCACCTTA
rJMFF005A24+ GCCTCTCGGAACACGGTGAGAGAGAACGTTACCAGACGAAGTGTTTCGTCAATCACCTTA
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consensus GCCTCTCGGAACACGGTGAGAGAGAACGTTACCAGACGAAGTGTTTCGTCAATCACCTTA

. : . : . : . : . : . :
rJMFF043I14+ GATAGATACTCCATCTGTCGGATCTCTCTCAGTGTCAAACCCTTCTGATCAGGAGGCATA
rJMFF025O04+ GATAGATACTCCATCTGTCGGATCTCTCTCAGTGTCAAACCCTTCTGATCAGGAGGCATA
rJMFF022G01+ GATAGATACTCCATCTGTCGGATCTCTCTCAGTGTCAAACCCTTCTGATCAGGAGGCATA
rJMFF007I04+ GATAGATACTCCATCTGTCGGATCTCTCTCAGTGTCAAACCCTTCTGATCAGGAGGCATA
rJMFF005A24+ GATAGATACTCCATCTGTCGGATCTCTCTCAGTGTCAAACCCTTCTGATCAGGAGGCATA
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consensus GATAGATACTCCATCTGTCGGATCTCTCTCAGTGTCAAACCCTTCTGATCAGGAGGCATA

. : . : . : . : . : . :
rJMFF043I14+ TTTCGCACGATTTCCTCT
rJMFF025O04+ TTTCGCACGATTTCCTCTTGCTCTGCCTTGGCTCTTTTGAAGGCCTCAGGGTGGCTCTGC
rJMFF022G01+ TTTCGCACGATTTCCTCTTGCTCTGCCTTGGCTCTTTTGAAGGCCTCAGGGTGGCTCTGC
rJMFF007I04+ TTTCGCACGATTTCCTCTTGCTCTGCCTTGGCTCTTTTGAAGGCCTCAGGGTGGCTCTGC
rJMFF005A24+ TTTCGCACGATTTCCTCTTGCTCTGCCTTGGCTCTTTTGAAGGCCTCAGGGTGGCTCTGC
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consensus TTTCGCACGATTTCCTCTTGCTCTGCCTTGGCTCTTTTGAAGGCCTCAGGGTGGCTCTGC

. : . : . : . : . : . :
rJMFF025O04+ AGAAACACTGTAGCCCACATTGTGATATGGCCTGATGATTCATGTCCAGCATTTAAGTAC
rJMFF022G01+ AGAAACACTGTAGCCCACATTGTGATATGGCCTGATGATTCATGTCCAGCATTTAAGTAC
rJMFF007I04+ AGAAACACTGTAGCCCACATTGTGATATGGCCTGATGATTCATGTCCAGCATTTAAGTAC
rJMFF005A24+ AGAAACACTGTAGCCCACATTGTGATATGGCCTGATGATTCATGTCCAGCATTTAAGTAC
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consensus AGAAACACTGTAGCCCACATTGTGATATGGCCTGATGATTCATGTCCAGCATTTAAGTAC

. : . : . : . : . : . :
rJMFF025O04+ ATCACTAGAACATCAATTATTTCCTCGTCATCCAGCTCTCTCCCATTCTCATCTTTAACT
rJMFF022G01+ ATCACTAGAACATCAATTATTTCCTCGTCATCCAGCTCTCTCCCATTCTCATCTTTAACT
rJMFF007I04+ ATCACTAGAACATCAATTATTTCCTCGTCATCCAGCTCTCTCCCATTCTCATCTTTAACT
rJMFF005A24+ ATCACTAGAACATCAATTATTTCCTCGTCATCCAGCTCTCTCCCATTCTCATCTTTAAC
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consensus ATCACTAGAACATCAATTATTTCCTCGTCATCCAGCTCTCTCCCATTCTCATCTTTAACT

. : . : . : . : . : . :
rJMFF025O04+ TCCATTAGTCTATCCATCATGTCTCTCTTCTCATGAA
rJMFF022G01+ T
rJMFF007I04+ T
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consensus TCCATTAGTCTATCCATCATGTCTCTCTTCTCATGAA