Alignment Contig 1182

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF041L16+ AGTCACGAAAAACTCAGAATGATTCATTAATCCAAAGAATTATGCAAAACTAATCATTAC
rJMFF008O11+ AATGATTCATTAATCCAAAGAATTATGCAAAACTAATCATTAC
rJMFF028O12+ GCAAAACTAATCATTAC
rJMFF040K21+ AAAACTAATCATTAC
rJMFF023A11+ AATGATTCATTAATCCAAAGAATTATGCAAAACTAATCATTAC
rJMSF033L13+ AAACTAATCATTAC
rJMFF017F16+ AATGATTCATTAATCCAAAGAATTATGCAAAACTAATCATTAC
rJMFF029C01+ TTAATCCAAAGAATTATGCAAAACTAATCATTAC
____________________________________________________________
consensus AGTCACGAAAAACTCAGAATGATTCATTAATCCAAAGAATTATGCAAAACTAATCATTAC

. : . : . : . : . : . :
rJMFF041L16+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMFF008O11+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMFF028O12+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMFF040K21+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMFF023A11+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMSF033L13+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMFF017F16+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
rJMFF029C01+ AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC
____________________________________________________________
consensus AACGTATAACTTCAAGAACAGGATTATGATGGTTTAAGGATAAATGGTGTTAAGGAAAAC

. : . : . : . : . : . :
rJMFF041L16+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMFF008O11+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMFF028O12+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMFF040K21+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMFF023A11+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMSF033L13+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMFF017F16+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
rJMFF029C01+ ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC
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consensus ATTTGTTGCTTTTCTATCAGTTTTCCGGTGTCTTCTGGTCTCGCCGGCGGCGACTACTTC

. : . : . : . : . : . :
rJMFF041L16+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMFF008O11+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMFF028O12+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMFF040K21+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMFF023A11+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMSF033L13+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMFF017F16+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
rJMFF029C01+ TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG
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consensus TTCGCCATCAAAGTGTAATACTGGGGTACTTGCATGCTCCATAACTGGGATCATTGATTG

. : . : . : . : . : . :
rJMFF041L16+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMFF008O11+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMFF028O12+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMFF040K21+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMFF023A11+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMSF033L13+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMFF017F16+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
rJMFF029C01+ TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT
____________________________________________________________
consensus TCTTAACGGCGAGTCCGTTGAAGTAACATGTCCCGCCGAGACTGCGAAACTGTGCCCAGT

. : . : . : . : . : . :
rJMFF041L16+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMFF008O11+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMFF028O12+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMFF040K21+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMFF023A11+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMSF033L13+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMFF017F16+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
rJMFF029C01+ ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC
____________________________________________________________
consensus ACGAACTGAAAGCATAGCTCGCATGGCGGATCAATGAGTTCGGGTTGTAACACGCGCCGC

. : . : . : . : . : . :
rJMFF041L16+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMFF008O11+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMFF028O12+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMFF040K21+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMFF023A11+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMSF033L13+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMFF017F16+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
rJMFF029C01+ CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG
____________________________________________________________
consensus CCGGTTGGATCGGGTTGCAGGTCCGATTACCCTGCCCGCAAGCGTACGATAAAGCGTCGG

. : . : . : . : . : . :
rJMFF041L16+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMFF008O11+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMFF028O12+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMFF040K21+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMFF023A11+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMSF033L13+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMFF017F16+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
rJMFF029C01+ CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT
____________________________________________________________
consensus CCACCGCGGTTAGATTCGCCGCCGGAGCCACCACGCACCAAACTTTTCCTTTGTACGGTT

. : . : . : . : . : . :
rJMFF041L16+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMFF008O11+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMFF028O12+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMFF040K21+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMFF023A11+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMSF033L13+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMFF017F16+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
rJMFF029C01+ GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT
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consensus GGTTGGTCGTCGGCTTCGGCAGCGGCGGGAATTCGGATTCCGGCGTCTTCCCCGACAGGT

. : . : . : . : . : . :
rJMFF041L16+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTC
rJMFF008O11+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
rJMFF028O12+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
rJMFF040K21+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
rJMFF023A11+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
rJMSF033L13+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
rJMFF017F16+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
rJMFF029C01+ CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG
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consensus CAATCGGGTAAATGTTGGTCCCGTTCGGGTACAACACCCCGAAATGCCGCTCCGTACCCG

. : . : . : . : . : . :
rJMFF008O11+ GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG
rJMFF028O12+ GACCCGGTTTCTGGNTCTCGTTATACAGAGCGAAAATAA
rJMFF040K21+ GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG
rJMFF023A11+ GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG
rJMSF033L13+ GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG
rJMFF017F16+ GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG
rJMFF029C01+ GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG
____________________________________________________________
consensus GACCCGGTTTCTGGTTCTCGTTATACAGAGCGAAAATAAGCGTCGGAATTACCACGCCCG

. : . : . : . : . : . :
rJMFF008O11+ GCCTCGCCGGCGTCCCC-ACCTTCGAGGTAAACTTCTTCACCACGTTCCGGTTATACGTG
rJMFF040K21+ GCCTCGCCGGCGTCCCC-ACCTTCGAGGTAAACTTCTTCACCACGTT
rJMFF023A11+ GCCTCGCCGGCGTCCCC-ACCTTCGAGGTAAACTTCTTCAC
rJMSF033L13+ GCCTCGCCGGCGTCCCC-ACCTTCGAGGTAAACTTCTTCACCACGTTCCGGTTATACGTG
rJMFF017F16+ GCCTCGCCGGCGTCCCC-ACCTTCGAGGTAAACTTCTTCACCACGTTCCGGTTATACGTG
rJMFF029C01+ GCCTCGCCGGCGTCCCCCACCTTCGAGGTAAACTTCTTCACCACGTTCCGGTTATACGTG
____________________________________________________________
consensus GCCTCGCCGGCGTCCCC-ACCTTCGAGGTAAACTTCTTCACCACGTTCCGGTTATACGTG

. : . : . : . : . : . :
rJMFF008O11+ GCGGAATTATAAATACTCGCGCCGATTTGATCGACGTCNCCGCCGTTGGGCCAACCCGTT
rJMSF033L13+ GCGGAATTATAAATACTCGCGCCGATTTGATCGACGTC
rJMFF017F16+ GCGGAATTATAAATACTCGCGCCGATTTGATCGACGTCGCCGCCGTTGGGCCAACCCGTT
rJMFF029C01+ GCGGAATTATAAATACTCGCGCCGATTTGATCGACGTCGCCGCCGTTGGGCCAACCCGTT
____________________________________________________________
consensus GCGGAATTATAAATACTCGCGCCGATTTGATCGACGTCGCCGCCGTTGGGCCAACCCGTT

. : . : . : . : . : . :
rJMFF008O11+ TCC
rJMFF017F16+ TCC
rJMFF029C01+ TCCG
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consensus TCCG