Alignment Contig 11739

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFS015A03- CTGAAAGATTACGACGATAGAGACAATTGATGGCGTAAGGGCAGTCCAATAGGGTTACTG
rJMSF028G09+ CGACGATAGAGACAATTGATGGCGTAAGGGCAGTCCAATAGGGTTACTG
rJMSF031E04+ AGGGCAGTCCAATAGGGTTACTG
rJMSF044G05+ ATAGGGTTACTG
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consensus CTGAAAGATTACGACGATAGAGACAATTGATGGCGTAAGGGCAGTCCAATAGGGTTACTG

. : . : . : . : . : . :
JMFS015A03- TTGTTAGAACATCTTGTATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA
rJMSF028G09+ TTGTTAGAACATCTTGTATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA
rJMSF031E04+ TTGTTAGAACATCTTGTATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA
rJMSF044G05+ TTGTTAGAACATCTTGTATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA
rJMSF008N08+ CATCTTGTATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA
rJMSF029B19+ TATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA
JMFN041F17- AGAAACA
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consensus TTGTTAGAACATCTTGTATGGTTGTCCACTAACCAGCTGAGAAAATTACTCACAGAAACA

. : . : . : . : . : . :
JMFS015A03- AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
rJMSF028G09+ AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
rJMSF031E04+ AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
rJMSF044G05+ AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
rJMSF008N08+ AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
rJMSF029B19+ AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
JMFN041F17- AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG
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consensus AATCAAACAACACAACTATGGCCTTCGTACGAGAGAGCATTATCGCGCTGTTCTCGTTGG

. : . : . : . : . : . :
JMFS015A03- CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
rJMSF028G09+ CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
rJMSF031E04+ CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
rJMSF044G05+ CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
rJMSF008N08+ CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
rJMSF029B19+ CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
JMFN041F17- CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT
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consensus CGGAAGTGGAAAACAATGGCTGCATCGCGTATTCTGAGAATAAATAGGCAGGAGCGAGAT

. : . : . : . : . : . :
JMFS015A03- CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
rJMSF028G09+ CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
rJMSF031E04+ CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
rJMSF044G05+ CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
rJMSF008N08+ CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
rJMSF029B19+ CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
JMFN041F17- CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT
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consensus CGGTGTACTCACAATCTGGATATTTCGTCGCGGTGGTGGGCGCCCACTGCAAGTGTTTGT

. : . : . : . : . : . :
JMFS015A03- GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
rJMSF028G09+ GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
rJMSF031E04+ GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
rJMSF044G05+ GGAGGGAGATGAAGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
rJMSF008N08+ GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
rJMSF029B19+ GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
JMFN041F17- GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG
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consensus GGAGGGAGATGATGGACCGCAACTCATGTTAGTCGCCTCTTATCAGCTCCGAGGAGAAAG

. : . : . : . : . : . :
JMFS015A03- AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
rJMSF028G09+ AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
rJMSF031E04+ AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
rJMSF044G05+ AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
rJMSF008N08+ AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
rJMSF029B19+ AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
JMFN041F17- AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA
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consensus AAGTAGCTAAAGGGTGATGATGATCGAGCCTAGTAGGCGGGCGTGTGGAGTGTCATTGGA

. : . : . : . : . : . :
JMFS015A03- CCTTTGCAGCCGTGCAACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
rJMSF028G09+ CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
rJMSF031E04+ CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
rJMSF044G05+ CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
rJMSF008N08+ CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
rJMSF029B19+ CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
JMFN041F17- CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
JMFS060D03- TTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA
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consensus CCTTTGCAGCCGTGCGACTTGACACGCCGTGCAACAATTTGGCGAATCCTAGGAAACTTA

. : . : . : . : . : . :
JMFS015A03- GCTTTC
rJMSF028G09+ GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
rJMSF031E04+ GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
rJMSF044G05+ GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
rJMSF008N08+ GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
rJMSF029B19+ GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
JMFN041F17- GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
JMFS060D03- GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC
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consensus GCTTTCCGTCGGTGTGCCTGATCCAGTCGTGGAGAACGGCGTGCAAAGGAACGGAAGGGC

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rJMSF028G09+ CAAGACCAAGTTCC
rJMSF031E04+ CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA
rJMSF044G05+ CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA
rJMSF008N08+ CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA
rJMSF029B19+ CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA
JMFN041F17- CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA
JMFS060D03- CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA
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consensus CAAGACCAAGTTCCGAAGCTAATTCTTCGATGACTATGGCCCTATTTCCATCCTTTTCGA

. : . : . : . : . : . :
rJMSF031E04+ AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCCTCGAGCTGATGGA
rJMSF044G05+ AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCCTCGAGCTGATGGA
rJMSF008N08+ AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCCTCGAGCTGATGGA
rJMSF029B19+ AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCCTCGAGCTGATGGA
JMFN041F17- AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCTTCGAGCTGATGGA
JMFS060D03- AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCCTCGAGCTGATGGA
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consensus AGATTTCATAGGCACATCGTGCATGTTGTTCCCATCGATCAAGAGCCTCGAGCTGATGGA

. : . : . : . : . : . :
rJMSF031E04+ CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGTGCATTAA
rJMSF044G05+ CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGTGCATTAA
rJMSF008N08+ CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGTGCATTAA
rJMSF029B19+ CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGTGCATTAA
JMFN041F17- CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGT
JMFS060D03- CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGTGCATTAA
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consensus CGCTTAACGCAGCTGCACAGAATTCCTCAAAATCCATCCTCCTGTACTGTAGTGCATTAA

. : . : . : . : . : . :
rJMSF031E04+ GCGATGCAAGAAAATCATGGATACGAGACTCTTTCATGGCATCTGTTGAATATTTTCATC
rJMSF044G05+ GCGATGCAAGAAAATCATGGATACGAGACTCTTTCATGGCATCTGTTGAATATTT-CATC
rJMSF008N08+ GCGATGCAAGAAAATCATGGATACGAGACTCTTTCATGGCATCTGTTGAATATTT-CATC
rJMSF029B19+ GCGATGCAAGAAAATCATGGATACGAGACTCTTTCATGGCATCTGTTGAATATTT-CATC
JMFS060D03- GCGATGCAAGAAAATCATGGATACGAGACTCTTTCATGGCATCTGTTGAATATTT-CATC
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consensus GCGATGCAAGAAAATCATGGATACGAGACTCTTTCATGGCATCTGTTGAATATTT-CATC

. : . : . : . : . : . :
rJMSF031E04+ AAGGCCGTTTTTATATTTTCC
rJMSF044G05+ AAGGCCGTTTTTATATTTTCC
rJMSF008N08+ AAGGCCGTTTTTATATTTTCCAAACTTATGGTGCCATTTTTGTTAGG
rJMSF029B19+ AAGGCCGTTTTTATATTTTCC
JMFS060D03- AAGACCGTTTTTATATTTTCCAAACTTATGGTGCCATTTTTGTTAGGTTCTAGCAGAGCA
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consensus AAGGCCGTTTTTATATTTTCCAAACTTATGGTGCCATTTTTGTTAGGTTCTAGCAGAGCA

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JMFS060D03- AACTGCTCCTTCAAATAAAAAAGCTCGTCCACAGTCAATGTTTTGGATAAAGCCCGTAAA
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consensus AACTGCTCCTTCAAATAAAAAAGCTCGTCCACAGTCAATGTTTTGGATAAAGCCCGTAAA

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JMFS060D03- GCAGCTTTCCTTAGAGCAGATGATCGCATGTAAGCCTTCATGAGTTTGAATATTAGTATA
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consensus GCAGCTTTCCTTAGAGCAGATGATCGCATGTAAGCCTTCATGAGTTTGAATATTAGTATA

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JMFS060D03- TCCAATGGCACTTTCGTGTCATTACAGCTTTTTATCCATGGATGGCACAAGGCTTGAGCT
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consensus TCCAATGGCACTTTCGTGTCATTACAGCTTTTTATCCATGGATGGCACAAGGCTTGAGCT

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JMFS060D03- GCGGTCATTCTTT
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consensus GCGGTCATTCTTT