Alignment Contig 11715

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN034K11+ GAGAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXXXAATCATCAGATCTTTCTTCTCTAA
rJMFF042J15+ TTCTCTAA
rJMFF050M22+ CTCTAA
rJMFF009H15+ A
____________________________________________________________
consensus GAGAACTAGTCTCGAGNNNNNNNNNNNNNNNNNNNNAATCATCAGATCTTTCTTCTCTAA

. : . : . : . : . : . :
JMFN034K11+ ATGAAACTTCATCATTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF042J15+ ATAAAACTTCATCATTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF050M22+ ATGAAACTTCATCATTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF009H15+ ATGAAACTTCATCATTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF006A17+ AAACTTCATCATTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF023G24+ TTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF020D04+ TTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF034N12+ TTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF023J06+ TTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA
rJMFF023B04+ CTGGCCTANTGGCCATATGAGTCTAGGCATCATAAAATA
____________________________________________________________
consensus ATGAAACTTCATCATTGCATTCTGGCCTACTGGCCATATGAGTCTAGGCATCATAAAATA

. : . : . : . : . : . :
JMFN034K11+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF042J15+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF050M22+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF009H15+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF006A17+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF023G24+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF003J15+ CTTCTTAATTACTTAANGATGANGATGANCTGNN
rJMFF020D04+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF034N12+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF023J06+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
rJMFF023B04+ AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA
____________________________________________________________
consensus AAACAGGATAAAACATAACCAGATAACTTCTTAATTACTTAAAGATGAAGATGAACTGCA

. : . : . : . : . : . :
JMFN034K11+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF042J15+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF050M22+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF009H15+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF006A17+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF023G24+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF003J15+ NATCNGCTGGAATATTGCACTTCTTTACTANATAGAANATCTTGAAGNANAGATAACNAT
rJMFF027L13+ CTGGAATATTGNACTTCTTTACTANATAGAANATCTTGAAGNANAGATAACNAT
rJMFF020D04+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF034N12+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF023J06+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
rJMFF023B04+ GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT
____________________________________________________________
consensus GATCAACTGGAATATTGCACTTCTTTACTAGATAGAAAATCTTGAAGCAGAGATAACAAT

. : . : . : . : . : . :
JMFN034K11+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF042J15+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF050M22+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF009H15+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF006A17+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF023G24+ TCCCTCAATTTCNATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF003J15+ TCCCTCNNTTTCGNTGGNCCCCGCTTCNNTTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF027L13+ TCCCTCNATTTCGNTGGTCCCCGCTTCNATTTGCNACTCCAGTCACAGCACGCTGAACTC
rJMFF020D04+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF034N12+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF023J06+ TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
rJMFF023B04+ TCCCTCAATTTCANTGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC
____________________________________________________________
consensus TCCCTCAATTTCAATGGTCCCCGCTTCCATTTGCCACTCCAGTCACAGCACGCTGAACTC

. : . : . : . : . : . :
JMFN034K11+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF042J15+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF050M22+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF009H15+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF006A17+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF023G24+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF003J15+ NGGATNATGCNTNCTGCNCATCNGNGTCGGAAATCTGGTGGNGAATCACGANNCTGATTC
rJMFF027L13+ GGGATNATGCNTNCTGCNCATCNGTGTCGGAAATCTGGTGGNGAATCACNAACCTGATTC
rJMFF020D04+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF034N12+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF023J06+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
rJMFF023B04+ GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC
____________________________________________________________
consensus GGGATAATGCATACTGCACATCAGTGTCGGAAATCTGGTGGTGAATCACGAACCTGATTC

. : . : . : . : . : . :
JMFN034K11+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF042J15+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF050M22+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF009H15+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF006A17+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF023G24+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF003J15+ TCTTTGGGCCTNCTGGAATAATGANCACACNATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF027L13+ TCTTTGGGCCTNCTGGNANAATGANCACACNATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF020D04+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF034N12+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF023J06+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
rJMFF023B04+ TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA
____________________________________________________________
consensus TCTTTGGGCCTTCTGGTAGAATGAGCACACCATGTTCCGCTAGCCTCTTGCACAGCTCCA

. : . : . : . : . : . :
JMFN034K11+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF042J15+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF050M22+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF009H15+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF006A17+ TTTCAGTTGT--TTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF023G24+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF003J15+ TTTCAGTNGTGNNTGCTTCCTTAAGNATATCGNANAATACGATGGTTGNTTCTNCTGAAG
rJMFF027L13+ TTTCAGTNGTGNTTGCTTCCTTAAGNATATCGNANAATACGATGNTTGTTTCTACTGAAG
rJMFF020D04+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACNATGTTTGTTTCTACTGAAG
rJMFF034N12+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF023J06+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
rJMFF023B04+ TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG
____________________________________________________________
consensus TTTCAGTTGTGTTTGCTTCCTTAAGTATATCGCAGAATACAATGTTTGTTTCTACTGAAG

. : . : . : . : . : . :
JMFN034K11+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF042J15+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF050M22+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF009H15+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF006A17+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF023G24+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF003J15+ CCNTATCNNCTTCCAGNCCGCTAATNTTGTTANNCCCCNCTGCTAAAGTNTTANCCTTNT
rJMFF027L13+ CCATATCNACTTCCANTCCGCTAATTTTGTTANNCCCCNCTGCTAAAGTNTTANCCTTTT
rJMFF020D04+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF034N12+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF023J06+ CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
rJMFF023B04+ CCATATCAAATTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT
____________________________________________________________
consensus CCATATCAACTTCCAGTCCGCTAATTTTGTTAAGCCCCTCTGCTAAAGTTTTAGCCTTTT

. : . : . : . : . : . :
JMFN034K11+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF042J15+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF050M22+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF009H15+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF006A17+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF023G24+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF003J15+ NGTGATCCCCTTC
rJMFF027L13+ TGTGATCCCCTTCNAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGNANAACA--
rJMFF020D04+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF034N12+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF023J06+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
rJMFF023B04+ TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA
____________________________________________________________
consensus TGTGATCCCCTTCGAGCTTACCGACATTTTCTTGAAACCCAACAAGAGCAGCAGCACACA

. : . : . : . : . : . :
JMFN034K11+ ACACGCCTAT
rJMFF042J15+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF050M22+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCC
rJMFF009H15+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF006A17+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF023G24+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF027L13+ ACACGCCTATCTGTCTCATTCCACCGCCTNANGTCTTTCTCATAATCCTTG
rJMFF020D04+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF034N12+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF023J06+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
rJMFF023B04+ ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA
____________________________________________________________
consensus ACACGCCTATCTGTCTCATTCCACCGCCTAAGGTCTTTCTCATAATCCTTGCCCTGTCAA

. : . : . : . : . : . :
rJMFF042J15+ TGAAGCTTTTC
rJMFF009H15+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
rJMFF006A17+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
rJMFF023G24+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
rJMFF020D04+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
rJMFF034N12+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
rJMFF023J06+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
rJMFF023B04+ TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC
____________________________________________________________
consensus TGAAGCTTTTCGGACCAACAATTACACTTCCTACTGGAGCGCCCAGACCTTTTGACAGAC

. : . : . : . : . : . :
rJMFF009H15+ NAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAGCAGGAACGCCAAGGGCAGCAG
rJMFF006A17+ AAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAGCAGGAACGCCAAGGGCAGCAG
rJMFF023G24+ AAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAG
rJMFF020D04+ AAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAGCANGAACGCCNAGGGCAGCAG
rJMFF034N12+ AAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAGCAGGAACGCCAAGGGCAGCAG
rJMFF023J06+ AAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAGCAGGAACGCCAAGGGCAGCAG
rJMFF023B04+ AAACAGAAACAGAATCGGCAGNCTGTACAAGCCTACTAGCAGGAACGCCAAGGGCAGCAG
____________________________________________________________
consensus AAACAGAAACAGAATCGGCAGCCTGTACAAGCCTACTAGCAGGAACGCCAAGGGCAGCAG

. : . : . : . : . : . :
rJMFF009H15+ ATGCATTGAATATGCGAGCTCCATCAATATGAAGTTTCAGCCCGTACTTCTTTGCGAGCT
rJMFF006A17+ ATGCATTGAATATGCGAGCTCCATCAATATGAAGTTTCAGCCCGTACTTCTTTGCGAGCT
rJMFF020D04+ ATGCATTGAATATGCGAGCTCCATCAATATGAAGTTTCAGCCCGTACTTCTTTGCG
rJMFF034N12+ ATGCATTGAATATGCGAGCTCCATCAATATGAAGTTTCAGCCCGTACTTCTTTGCGAGCT
rJMFF023J06+ ATGCATTGAATATGCGAGCTCCATCAATATGAAGTTTCAGCCCGTACTTCTTTGCGAGCT
rJMFF023B04+ ATGCATTGAATATGCGAGCTCCATCNATATGAAGTTT
____________________________________________________________
consensus ATGCATTGAATATGCGAGCTCCATCAATATGAAGTTTCAGCCCGTACTTCTTTGCGAGCT

. : . : . : . : . : . :
rJMFF006A17+ CTCCAACTTTGTCTGTATACTCTGCTGAGANGCATCTACCA
rJMFF034N12+ CTCCNACTTTGTCTGTATACTCTGCTG
rJMFF023J06+ CTCCAACTTTGTCTGTATACTCTGCTG
____________________________________________________________
consensus CTCCAACTTTGTCTGTATACTCTGCTGAGANGCATCTACCA