Alignment Contig 1159

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF037F18+ CTATTACATAACCATGTCATTACTCTGAACTCCAATACAACAAACAAACATGATCACAAA
rJMFF029O18+ TACAACAAACAAACATGATCACAAA
rJMSF032I05+ TACTCTGAACTCCAATACAACAAACAAACATGATCACAAA
rJMFF024D24+ TATTACATAACCATGTCAATACTCTGAACTCCAATACAACAAACAAACATGATCACAAA
rJMFF036G22+ TATTACATAACCATGTCAATACTCTGAACTCCAATACAACAAACAAACATGATCACAAA
rJMFF015D11+ TATTACATAACCATGTCATTACTCTGAACTCCAATACAACAAACAAACATGATCACAAA
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consensus CTATTACATAACCATGTCAATACTCTGAACTCCAATACAACAAACAAACATGATCACAAA

. : . : . : . : . : . :
rJMFF037F18+ CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC
rJMFF029O18+ CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC
rJMSF032I05+ CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC
rJMFF024D24+ CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC
rJMFF036G22+ CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC
rJMFF015D11+ CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC
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consensus CCCACAAAGTCCAAAATACATAATTCTAACAACAATGTCCAAGAAGCTTAAAATAAACAC

. : . : . : . : . : . :
rJMFF037F18+ CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT
rJMFF029O18+ CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT
rJMSF032I05+ CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT
rJMFF024D24+ CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT
rJMFF036G22+ CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT
rJMFF015D11+ CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT
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consensus CTTACAAGTATAGAAACCCAAAATAAATTAAATACTTTGATTGATTCAAAGCATACCATT

. : . : . : . : . : . :
rJMFF037F18+ TGCGAATTTCCCAGCTTTCCTGAGTTTATGAGTTCTATCAAATTTAGCTTTGCGAGCTAC
rJMFF029O18+ TGCGAATTTCCCAGCTTTCCTGAGTTTATGAGTTCTATCAAATTTAGCTTTGCGAGCTAC
rJMSF032I05+ TGCGAATTTCCCAGCTTTCCTGAGTTTATG-GTTCTATCAAATTTAGCTTTGCGAGCTAC
rJMFF024D24+ TGCGAATTTCCCAGCTTTCCTGAGTTTATGAGTTCTATCAAATTTAGCTTTGCGAGCTAC
rJMFF036G22+ TGCGAATTTCCCAGCTTTCCTGAGTTTATGAGTTCTATCAAATTTAGCTTTGCGAGCTAC
rJMFF015D11+ TGCGAATTTCCCAGCTTTCCTGAGTTTATGAGTTCTATCAAATTTAGCTTTGCGAGCTAC
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consensus TGCGAATTTCCCAGCTTTCCTGAGTTTATGAGTTCTATCAAATTTAGCTTTGCGAGCTAC

. : . : . : . : . : . :
rJMFF037F18+ TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT
rJMFF029O18+ TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT
rJMSF032I05+ TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT
rJMFF024D24+ TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT
rJMFF036G22+ TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT
rJMFF015D11+ TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT
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consensus TGGATCGTTTCTAAACTGATTCGCATCAATGAGCTCCCAAGGCCTTCCAGGATTTTTCAT

. : . : . : . : . : . :
rJMFF037F18+ CATCTTCTTCTTTCTTTGGTCCGGTTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA
rJMFF029O18+ CATCTTCTTCTTTCTTTGGTCCGGTTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA
rJMSF032I05+ CATCTTCTTCTTTCTTTGGTCCGGTTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA
rJMFF024D24+ CATCTTCTTCTTTCTTTGGTCCGGGTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA
rJMFF036G22+ CATCTTCTTCTTTCTTTGGTCCGGTTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA
rJMFF015D11+ CATCTTCTTCTTTCTTTGGTCCGGTTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA
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consensus CATCTTCTTCTTTCTTTGGTCCGGTTCTTCTCCTACTCCAAAACTACCAACCACCTTGTA

. : . : . : . : . : . :
rJMFF037F18+ AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACCAACGGTTTTAACAATCCTAGT
rJMFF006L03+ GGTTTTAACANTCCTAGT
rJMFF029O18+ AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACGAACGGTTTTAACAATCCTAGT
rJMSF032I05+ AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACCAACGGTTTTAACAATCCTAGT
rJMFF024D24+ AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACCAACGGTTTTAACAATCCTAGT
rJMFF036G22+ AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACCAACGGTTTTAACAATCCTAGT
rJMFF015D11+ AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACCAACGGTTTTAACAATCCTAGT
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consensus AGCACCCCAAGCTGCAACGCCCATAGCGGCTATAACACCAACGGTTTTAACAATCCTAGT

. : . : . : . : . : . :
rJMFF037F18+ AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT
rJMFF006L03+ AATTTGACTGCNTTCCTCTCCCANCTTGNGGAGAATGACTCGAATTCCATGTTTTGGAGT
rJMFF029O18+ AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT
rJMSF032I05+ AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT
rJMFF024D24+ AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT
rJMFF036G22+ AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT
rJMFF015D11+ AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT
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consensus AATTTGACTGCCTTCCTCTCCCAGCTTGTGGAGAATGACTCGAATTCCATGTTTTGGAGT

. : . : . : . : . : . :
rJMFF037F18+ GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG
rJMFF006L03+ GACTGNGANNCCATGAACCGGGGAGTGGATGT
rJMFF029O18+ GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG
rJMSF032I05+ GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG
rJMFF024D24+ GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG
rJMFF036G22+ GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG
rJMFF015D11+ GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG
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consensus GACTGTGAAGCCATGAACCGGGGAGTGGATGTAAGTTGGGGATAGTGTGAAGGCGAAGCG

. : . : . : . : . : . :
rJMFF037F18+ CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG
rJMFF029O18+ CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG
rJMSF032I05+ CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG
rJMFF024D24+ CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG
rJMFF036G22+ CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG
rJMFF015D11+ CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG
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consensus CCTTAGGATTATGGAAAGAACAACTTTGGCTTCAATCTTGGCGAAATTTAACCCCAGACG

. : . : . : . : . : . :
rJMFF037F18+ TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT
rJMFF029O18+ TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT
rJMSF032I05+ TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT
rJMFF024D24+ TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT
rJMFF036G22+ TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT
rJMFF015D11+ TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT
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consensus TGTTCCAGCATCGTAACAGGAAGACTTAAAGGCTTTAGATTCTTCTTCCACAATTCCCTT

. : . : . : . : . : . :
rJMFF037F18+ GATTTTGATGAAGGGCAGTANAGGGTATTGCCTCTGACAATCTTCAACAATCTCATCCAC
rJMFF029O18+ GATTTTGATGAAGGGCAGTAGAGGGTATTGCCTCTGAC
rJMSF032I05+ GATTTTGATGAAGGGCAGTAGAGGGTATTGCCTCTGACAATCTTCAACAATCTCATCCAC
rJMFF024D24+ GATTTTGATGAAGGGCAGTAGAGGGTATTGCCTCTGACAATCTTCAACAATCTCATCCAC
rJMFF036G22+ GATTTTGATGAAGGGCAGTAGAGGGTATTGCCTCTGAC
rJMFF015D11+ GATTTTGATGAAGGGCAGTANAGGGTATTGCCTCTGACAATCTTCAACAATCTCATCCAC
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consensus GATTTTGATGAAGGGCAGTAGAGGGTATTGCCTCTGACAATCTTCAACAATCTCATCCAC

. : . : . : . : . : . :
rJMFF037F18+ AATTTTCAGTCTTGCAATGCCATCCTGGAT
rJMSF032I05+ AATTTTCAGTCTNGCAATGCCA
rJMFF024D24+ AATTTTCAGTCTTGCAATGCCA
rJMFF015D11+ AATTTTCAGTCTTGCAATGCCA
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consensus AATTTTCAGTCTTGCAATGCCATCCTGGAT