Alignment Contig 11586

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF035G23+ GTACACTATATAGGGGAGTCCCTGTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF012O03+ ATATAGGGGAGTCCCTGTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF028B11+ ATATAGGGGAGTCCCTGTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF021K03+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF007J14+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF031K16+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF034O10+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF048J01+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF049I22+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMFF025L18+ GTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
JMSF046C18+ TTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT
____________________________________________________________
consensus GTACACTATATAGGGGAGTCCCTGTTTTCATCGATTTTCGAATTTTACCCAGTGTTTCTT

. : . : . : . : . : . :
JMFF035G23+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF012O03+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF028B11+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF021K03+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF007J14+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF031K16+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF034O10+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF048J01+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF049I22+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFF025L18+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMSF046C18+ CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFS105G01+ TCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
JMFS093G12+ TCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT
____________________________________________________________
consensus CTTCATCTCCTTCATTATAGCCTTCGCCTTATCACCAAACAAACAACACAGGATAAAGGT

. : . : . : . : . : . :
JMFF035G23+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF012O03+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF028B11+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF021K03+ GACCAGACAAAGAAGGTTTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF007J14+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFS050B01+ AGGTTTTTTGAGCCGGAAAATGGTNGGCTGAAGATCTGGGTTTGATC
JMFF031K16+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF034O10+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF048J01+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF049I22+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFF025L18+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMSF046C18+ -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFS105G01+ GACCAGACAAAGAAGGTTTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFS152E07+ AAGGTTTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
JMFS093G12+ GACCAGACAAAGAAGGTTTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC
____________________________________________________________
consensus -----------------TTTTTGAGCCGGAAAATGGTAGGCTGAAGATCTGGGTTTGATC

. : . : . : . : . : . :
JMFF035G23+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF012O03+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF028B11+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF021K03+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF007J14+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFS050B01+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF031K16+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF034O10+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF048J01+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF049I22+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFF025L18+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMSF046C18+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFS105G01+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFS152E07+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
JMFS093G12+ GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT
____________________________________________________________
consensus GGCGAAATCGATTTGTTCTTCCGATGTTTTGATTTTCATTGGATTGCTCTCCGATCTTCT

. : . : . : . : . : . :
JMFF035G23+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF012O03+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF028B11+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF021K03+ GGCTTTTGCGGTTTCTGAGTAGGTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF007J14+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFS050B01+ GGCTTTTGCGGTTTCTGNG---GTTTGTTAGAGAAGATTCTGACGGCANGGCTAGTGACC
JMFF031K16+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF034O10+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF048J01+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF049I22+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFF025L18+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMSF046C18+ GGCTTTTGCGGTTTCTGAGTAGGTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFS105G01+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFS152E07+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
JMFS093G12+ GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC
____________________________________________________________
consensus GGCTTTTGCGGTTTCTGAG---GTTTGTTAGAGAAGATTCTGACGGCAAGGCTAGTGACC

. : . : . : . : . : . :
JMFF035G23+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF012O03+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF028B11+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF021K03+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF007J14+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFS050B01+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTANTGGAGCACGGAAAT
JMFF031K16+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF034O10+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF048J01+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF049I22+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFF025L18+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMSF046C18+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFS105G01+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFS152E07+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
JMFS093G12+ AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT
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consensus AGAGTGGAATGTGATTTGCATGGGTGACGATGCCAGAGTTGCGTAGTGGAGCACGGAGAT

. : . : . : . : . : . :
JMFF035G23+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF012O03+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF028B11+ CAAAACGGCTTGGNGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF021K03+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF007J14+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFS050B01+ CAAAACGGCTTGGTGATATCCAGCCTGCCCCTCAACCCACAAGACAAGAAGAGAACTTGG
JMFF031K16+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAANCCACAGGACAAGAAGAGAACTTGG
JMFF034O10+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF048J01+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF049I22+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFF025L18+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMSF046C18+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFS105G01+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFS152E07+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
JMFS093G12+ CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG
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consensus CAAAACGGCTTGGTGATCTCCAGCCTGCCCCTCAACCCACAGGACAAGAAGAGAACTTGG

. : . : . : . : . : . :
JMFF035G23+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFF012O03+ CATTACCTACACAGGATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFF028B11+ CATTACCTACACAG
JMFF021K03+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFF007J14+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFS050B01+ CATTACCTACACAGAATAGAACTAAAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFF031K16+ CATTACCTACACAGA
JMFF034O10+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGA
JMFF048J01+ CATTACCTACACAGAATAGAACTANAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFF049I22+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFF025L18+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMSF046C18+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFS105G01+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFS152E07+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
JMFS093G12+ CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG
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consensus CATTACCTACACAGAATAGAACTAGAAGGAGAGGTGGTGGGGGAAGGGGAAGAGGTAATG

. : . : . : . : . : . :
JMFF035G23+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMFF012O03+ CAGCGGCTGCAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMFF021K03+ CAGCGGCTGTAGCAAAAGGGCC
JMFF007J14+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGT
JMFS050B01+ CAGCGGCTGTANCAAAAGGGCCTTCAAC
JMFF048J01+ CAGCGGCTGT
JMFF049I22+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMFF025L18+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMSF046C18+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMFS105G01+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMFS152E07+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
JMFS093G12+ CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA
____________________________________________________________
consensus CAGCGGCTGTAGCAAAAGGGCCTTCAACAGGAGTTCGTGGGAGGCCAGCTGCTGCTGGTA

. : . : . : . : . : . :
JMFF012O03+ GAGGCAGGGGGGTTAGGT
JMFF049I22+ GAGGCAGGGGGGTTAGGTTGATAGATTTAGACCCAGAGCCACCTTTCGAGGCTCCTCAAG
JMFF025L18+ GAGGCAGGGGGGTTAG
JMSF046C18+ GAGGCAGGGGGGTTAGGTTGATAGATTTAGACCCAGAGCCACCTTTCGAGGCTCCTCAAG
JMFS105G01+ GAGGCAGGGGGGTTAGGTTGATAGATTTAGACCCAGAGCCACCTTTCGAGGCTCCTCAAG
JMFS152E07+ GAGGCAGGGGGGTTAGGTTGATAGATTTAGACCCAGAGCCACCTTTCGAGGCTCCTCAAG
JMFS093G12+ GAGGCAGGGGGGTTAGGTTGATAGATTTAGACCCAGAGCCACCTTTCGAGGCTCCTCAAG
____________________________________________________________
consensus GAGGCAGGGGGGTTAGGTTGATAGATTTAGACCCAGAGCCACCTTTCGAGGCTCCTCAAG

. : . : . : . : . : . :
JMFF049I22+ CTGTTGCAGTTGGGGTCAGGGAACCAGCTTTTAATAGAATTGAAGGTGCTGCTGACAAAG
JMSF046C18+ CTGTTGCAGTTGGGGTCAGGGAACCAGCTTTTAATAGAATTGAAGGTGCTGCTGACAAAG
JMFS105G01+ CTGTTGCAGTTGGGGTCAGGGAACCAGCTTTTAATAGAATTGAAGGTGCTGCTGACAAAG
JMFS152E07+ CTGTTGCAGTTGGGGTCAGGGAACCAGCTTTTAATAGAATTGAAGGTGCTGCTGACAAAG
JMFS093G12+ CTGTTGCAGTTGGGGTCAGGGAACCA
____________________________________________________________
consensus CTGTTGCAGTTGGGGTCAGGGAACCAGCTTTTAATAGAATTGAAGGTGCTGCTGACAAAG

. : . : . : . : . : . :
JMFF049I22+ ATATT
JMSF046C18+ ATATTGCAATGGATGGTGGCAGTGCAGATA
JMFS105G01+ ATATT
JMFS152E07+ ATATT
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consensus ATATTGCAATGGATGGTGGCAGTGCAGATA