Alignment Contig 11535

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF020M19+ ATTGTGCAGCATTATTTGTGAAGGAAGGCTACAGACTACAGGCAGACACAGCACAGAGGT
JMSF006F08+ GAAGGAAGGCTACAGACTACAGGCAGACACAGCACAGAGGT
JMSF043O04+ GAAGGAAGGCTACAGACTACAGGCAGACACAGCACAGAGGT
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consensus ATTGTGCAGCATTATTTGTGAAGGAAGGCTACAGACTACAGGCAGACACAGCACAGAGGT

. : . : . : . : . : . :
JMFF020M19+ CGTCTCCTTCCTCTTCAGGTCTTCATTGACTTGGCTTGGCCTTCCTGCCAAGAAAGAATC
JMSF006F08+ CGTCTCCTTCCTCTTCAGGTCTTCATTGACTTGGCTTGGCCTTCCTGCCAAGAAAGAATC
JMSF043O04+ CGTCTCCTTCCTCTTCAGGTCTTCATTGACTTGGCTTGGCCTTCCTGCCAAGAAAGAATC
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consensus CGTCTCCTTCCTCTTCAGGTCTTCATTGACTTGGCTTGGCCTTCCTGCCAAGAAAGAATC

. : . : . : . : . : . :
JMFF020M19+ CAATTCCTGACGAAGAACAACACTGAAGAAAAGAAATCAATCGCAGAAATGGTGGCCCGG
JMSF006F08+ CAATTCCTGACGAAGAACAACACTGAAGAAAAGAAATCAATCGCAGAAATGGTGGCCCGG
JMSF043O04+ CAATTCCTGACGAAGAACAACACTGAAGAAAAGAAATCAATCGCAGAAATGGTGGCCCGG
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consensus CAATTCCTGACGAAGAACAACACTGAAGAAAAGAAATCAATCGCAGAAATGGTGGCCCGG

. : . : . : . : . : . :
JMFF020M19+ AAGTTCTCTGTCCGCCACAATGACTCCACCTTCGACGTCGATTACGACACCGACGATGGC
JMSF006F08+ AAGTTCTCTGTCCGCCACAATGACTCCACCTTCGACGTCGATTACGACACCGACGATGGC
JMSF043O04+ AAGTTCTCTGTCCGCCACAATGACTCCACCTTCGACGTCGATTACGACACCGACGATGGC
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consensus AAGTTCTCTGTCCGCCACAATGACTCCACCTTCGACGTCGATTACGACACCGACGATGGC

. : . : . : . : . : . :
JMFF020M19+ TTCGAAGTCCTCCTCTCCATCTCCTTCCCTCTTTTTCTCTTTCTTCAATTCCCTCGTTAA
JMSF006F08+ TTCGAAGTCCTCCTCTCCATCTCCTTCCCTCTTTTTCTCTTTCTTCAATTCCCTCGTTAA
JMSF043O04+ TTCGAAGTCCTCCTCTCCATCTCCTTCCCTCTTTTTCTCTTTCTTCAATTCCCTCGTTAA
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consensus TTCGAAGTCCTCCTCTCCATCTCCTTCCCTCTTTTTCTCTTTCTTCAATTCCCTCGTTAA

. : . : . : . : . : . :
JMFF020M19+ CACCTCCTTCTTTTACCTTTTCTCTCCCTATTTCCAGGTCCTCAAATTCCAGCTCTTCTC
JMSF006F08+ CACCTCCTTCTTTTACCTTTTCTCTCCCTATTTCCAGG
JMSF043O04+ CACCTCCTTCTTTTACCTTTTCTCTCCCTATTTCCAGGTCCTCAAATTCCAGCTCTTCTC
JMFF042H16+ GTCCTCAAATTCCAGCTCTTCTC
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consensus CACCTCCTTCTTTTACCTTTTCTCTCCCTATTTCCAGGTCCTCAAATTCCAGCTCTTCTC

. : . : . : . : . : . :
JMFF020M19+ TCTCACTTCAGTCCCTCCCGATCAACAAAAGATATTGGGAGGTGATGATGATCAGGTTGT
JMSF043O04+ TCTCACTTCAGTCCCTCCCGATCAACAAAAGATATTGGGAGGTGATGATGATCAGGTTGT
JMFF042H16+ TCTCACTTCAGTCCCTCCCGATCAACAAAAGATATTGGGAGGTGATGATGATCAGGTTGT
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consensus TCTCACTTCAGTCCCTCCCGATCAACAAAAGATATTGGGAGGTGATGATGATCAGGTTGT

. : . : . : . : . : . :
JMFF020M19+ ATCAGAAGACGCTGATCTGGCATCGGTTGCAGAAAAGCTCCGATTGGTGTCGATTGACGA
JMSF043O04+ ATCAGAAGACGCTGATCTGGCATCGGTTGCAGAAAAGCTCCGATTGGTGTCGATTGACGA
JMFF042H16+ ATCAGAAGACGCTGATCTGGCATCGGTTGCAGAAAAGCTCCGATTGGTGTCGATTGACGA
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consensus ATCAGAAGACGCTGATCTGGCATCGGTTGCAGAAAAGCTCCGATTGGTGTCGATTGACGA

. : . : . : . : . : . :
JMFF020M19+ AGAGGAAGAAACGAAGAAGAAAGAGAATTCGGAGCCTGAAGTCGCGATGTCGGA
JMSF043O04+ AGAGGAAGAAACGAAGAAGAAAGAGAATTCGGAGCCTGAAGTCGCGATGTCGGATGAAGA
JMFF042H16+ AGAGGAAAAAACGAAGAAGAAAGAGAATTCGGAGCCTGAAGTCGCGATGTCGGATGAAGA
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consensus AGAGGAAGAAACGAAGAAGAAAGAGAATTCGGAGCCTGAAGTCGCGATGTCGGATGAAGA

. : . : . : . : . : . :
JMSF043O04+ ATTAGCTCGGCTTTTGCAGGCAGAAGAAGACGCACTTATGATGCAGCAGTTTGTAGCAAG
JMFF042H16+ ATTAGCTCGGCTTTTGCAGGCAGAAGAAGACGCACTTATGATGCAGCAGTTTGTAGCAAG
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consensus ATTAGCTCGGCTTTTGCAGGCAGAAGAAGACGCACTTATGATGCAGCAGTTTGTAGCAAG

. : . : . : . : . : . :
JMSF043O04+ TCAAAATAATGCAGGCTTTGAGCAGAGGATAAGGCCTTACATTGATCAAGTTCTACAGTA
JMFF042H16+ TCAAAATAATGCAGGCTTTGAGCAGAGGATAAGGCCTTACATTGATCAAGTTCTACAGTA
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consensus TCAAAATAATGCAGGCTTTGAGCAGAGGATAAGGCCTTACATTGATCAAGTTCTACAGTA

. : . : . : . : . : . :
JMSF043O04+ TGAAGACCCACAGAGGCAGGAGGCTGCTCGAAAGACAGTACCTACTGATAAGCTTGAGGA
JMFF042H16+ TGAAGACCCACAGAGGCAGGAGGCTGCTCGANAGACAGTACCTACTGATAAGCTTGANGA
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consensus TGAAGACCCACAGAGGCAGGAGGCTGCTCGAAAGACAGTACCTACTGATAAGCTTGAGGA

. : . : . : . : . : . :
JMSF043O04+ GAAAGCATTGATTTCATTGGC
JMFF042H16+ GAAAGCATTGATTTCATTGGCCA
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consensus GAAAGCATTGATTTCATTGGCCA