Alignment Contig 1151

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF035L04+ TTAAGCTGAAAATACAAAATAACACACATATGTAGTTTATCAAAATTA-GTTGATACATA
rJMSF023N16+ ACATATGTAGTTTATCAAAATTATGTTGATACATA
rJMFF034F10+ TTAAGCTGAAAATACAAAATAACACACATATGTAGTTTATCAAAATTA-GTTGATACATA
rJMSF022E18+ ACATATGTAGTTTATCAAAATTA-GTTGATACATA
____________________________________________________________
consensus TTAAGCTGAAAATACAAAATAACACACATATGTAGTTTATCAAAATTA-GTTGATACATA

. : . : . : . : . : . :
rJMFF035L04+ TAGCTGCTAAATGTTGTTCCAAGTATAGTAGAACAATGTATTCTGTATGTATTAACGACC
JMFS131C11+ AACGACC
rJMSF023N16+ TNGCTGCTAAATGTTGTTCCAAGTATAGTAGAACAANGTATTCTGTATGTATTAACGACC
rJMFF034F10+ TAGCTGCTAAATGTTGTTCCAAGTATAGTAGAACAATGTATTCTGTATGTATTAACGACC
JMFS071H02+ AACGACC
rJMSF022E18+ TAGCTGCTAAATGTTGTTCCAAGTATAGTAGAACAATGTATTCTGTATGTATTAACGACC
____________________________________________________________
consensus TAGCTGCTAAATGTTGTTCCAAGTATAGTAGAACAATGTATTCTGTATGTATTAACGACC

. : . : . : . : . : . :
rJMFF035L04+ CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGTCCCCTCAAACTATCATCACT
JMFS131C11+ CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGTCCCCTCAAACTATCATCACT
rJMSF023N16+ CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGNCCCCTCAAACTATCATCACT
rJMFF034F10+ CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGTCCCCTCAAACTATCATCACT
JMFS071H02+ CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGTCCCCTCAAACTATCATCACT
rJMSF022E18+ CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGTCCCCTCAAACTATCATCACT
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consensus CAATTGATTACTGAGCTCTGAAAAAATAGTGTGAGATTGTCCCCTCAAACTATCATCACT

. : . : . : . : . : . :
rJMFF035L04+ TGTAGAAGTAGCAGTGGCACTGCTTTTAGTCCTGAACAATTTTTCAGCGTTTTCGGATGT
JMFS131C11+ TGTAGAAGTAGCAGGGGCACTGCTTTCACTCCCGAACAATTTTTCAGCGTTTCCCGATGT
rJMSF023N16+ TGTAGAAGTAGCAGTGGCACTGCTTTTAGTCCTGAANAATTTTTCAGCGTTTTCGGATGT
rJMFF034F10+ TGTAGAAGTAGCAGTGGCACTGCTTTTAGTCCTGAACAATTTTTCAGCGTTTTCGGATGT
JMFS071H02+ TGTAGAAGTAGCAGTGGCACTGCTTTTAGTCCTGAACAATTTTTCAGCGTTTTCGGATGT
rJMSF022E18+ TGTAGAAGTAGCAGTGGCACTGCTTTTAGTCCTGAACAATTTTTCAGCGTTTTCGGATGT
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consensus TGTAGAAGTAGCAGTGGCACTGCTTTTAGTCCTGAACAATTTTTCAGCGTTTTCGGATGT

. : . : . : . : . : . :
rJMFF035L04+ AGTAAACGCGCCACCATAATCCTCGTCTGACTTATTTGCCGCCTCGCCGTCGCCGCCCTT
JMFS131C11+ AGCAAACGCGCCACCACAATCCCGCGCGGACTCACTCGCCGGCTCGCGGGCGCGGGCCTG
rJMSF023N16+ ANTAAACGCGCCACCATAATCCTCGTCTGACTTATTTGCCGCCTCGCCGTCNCCGCCCTT
rJMFF034F10+ AGTAAACGCGCCACCATAATCCTCGTCTGACTTATTTGCCGCCTCGCCGTCGCCGCCCTT
JMFS071H02+ AGTAAACGCGCCACCATAATCCTCGTCTGACTTATTTGCCGCCTCGCCGTCGCCGCCCTT
rJMSF022E18+ AGTAAACGCGCCACCATAATCCTCGTCTGACTTATTTGCCGCCTCGCCGTCGCCGCCCTT
____________________________________________________________
consensus AGTAAACGCGCCACCATAATCCTCGTCTGACTTATTTGCCGCCTCGCCGTCGCCGCCCTT

. : . : . : . : . : . :
rJMFF035L04+ TGCAAGCAAAGGAAAGCCCGGCCTCTCCGGCGTGCGCGGCGGAGAGAGGCCGCCTCTCTT
JMFS131C11+ TGCGAGCAAAGGAAAGCCCGGCCTCTCCGGCGCGCGCGGAGGAGAGAGGCCGCCTCTCTT
rJMSF023N16+ TGCAAGCAAAGGAAAGCCCGGCCTCTCCGGCGTGCGCGGCGGAGAGAGGCCGCCTCTCTT
rJMFF034F10+ TGCAAGCAAAGGAAAGCCCGGCCTCTCCGGCGTGCGCGGCGGAGAGAGGCCGCCTCTCTT
JMFS071H02+ TGCAAGCAAAGGAAAGCCCGGCCTCTCCGGCGTGCGCGGCGGAGAGAGGCCGCCTCTCTT
rJMSF022E18+ TGCAAGCAAAGGAAAGCCCGGCCTCTCCGGCGTGCGCGGCGGAGAGAGGCCGCCTCTCTT
____________________________________________________________
consensus TGCAAGCAAAGGAAAGCCCGGCCTCTCCGGCGTGCGCGGCGGAGAGAGGCCGCCTCTCTT

. : . : . : . : . : . :
rJMFF035L04+ ATCGGCCGCATCTTGGAGCTGCAACGCAAACTCAAGGCCCCACACCACATCGTTCATCGC
JMFS131C11+ ATCGGCCGCATCT-GGAGCGCGCGCGCGAACTCAAGGCCCCACACCACATCGAGCATCGC
rJMSF023N16+ ATCGGCCGCATCTTGGAGCTGCAACGCAAACTCAAGGCCCCACACCACATCGTTCATCGC
rJMFF034F10+ ATCGGCCGCATCTTGGAGCTGCAACGCAAACTCAAGGCCCCACACCACATCGTTCATCGC
JMFS071H02+ ATCGGCCGCATCTTGGAGCTGCAACGCAAACTCAAGGCCCCACACCACATCGTTCATCGC
rJMSF022E18+ ATCGGCCGCATCTTGGAGCTGCAACGCAAACTCAAGGCCCCACACCACATCGTTCATCGC
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consensus ATCGGCCGCATCTTGGAGCTGCAACGCAAACTCAAGGCCCCACACCACATCGTTCATCGC

. : . : . : . : . : . :
rJMFF035L04+ CGGCCGATCGATCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG
JMFS131C11+ CGGCCGACCGACCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG
rJMSF023N16+ CGGCCGATCGATCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG
rJMFF034F10+ CGGCCGATCGATCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG
JMFS071H02+ CGGCCGATCGATCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG
rJMSF022E18+ CGGCCGATCGATCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG
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consensus CGGCCGATCGATCCCTTGATCCTTCAGGCAATTGCAGGCGATCTCCACGTACTGGATCAG

. : . : . : . : . : . :
rJMFF035L04+ ACACTCCGACGCGATCTGGCCCTTCAAATTCGGGTCCACAATCTCGCTGACGTCCCCCGT
JMFS131C11+ ACACTCCGACGCGATCTGGCCCTCTAAATCCGGGTCCACAATCTTGCTGACGTCCCCCGT
rJMSF023N16+ ACACTCCGACGCGATCTGNCCCTTCAAATTCGGGTCCACAATCTCGCTGACGTCCCCCGT
rJMFF034F10+ ACACTCCGACGCGATCTGGCCCTTCAAATTCGGGTCCACAATCTCGCTGACGTCCCCCGT
JMFS071H02+ ACACTCCGACGCGATCTGGCCCTTCAAATTCGGGTCCACAATCTCGCTGACGTCCCCCGT
rJMSF022E18+ ACACTCCGACGCGATCTGGCCCTTCAAATTCGGGTCCACAATCTCGCTGACGTCCCCCGT
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consensus ACACTCCGACGCGATCTGGCCCTTCAAATTCGGGTCCACAATCTCGCTGACGTCCCCCGT

. : . : . : . : . : . :
rJMFF035L04+ TTCATAACTCCGGCGGCCCCACTCCGCCAGACTGACTTTATTTCTCGGCAGATTTGGAAT
JMFS131C11+ TTCATAACTCCGGCGGCCCCACTCCGCCAGACTGACTTTAT
rJMSF023N16+ TTCATAACTCCGGCGGCCCCACTCCGNCAGACTGACTTTATTTCTCGGCAGATTTGGAAT
rJMFF034F10+ TTCATAACTCCGGCGGCCCCACTCCGCCAGACTGACTTTATTTCTCGGCAGATTTGGAAT
JMFS071H02+ TTCATAACTCCGGCGGCCCCACTCCGCCAGACTGACTTTATTTCTCGGCAGATTTGGAAT
rJMSF022E18+ TTCATAACTCCGGCGGCCCCACTCCGCCAGACTGACTTTATTTCTCGGCAGATTTGGAAT
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consensus TTCATAACTCCGGCGGCCCCACTCCGCCAGACTGACTTTATTTCTCGGCAGATTTGGAAT

. : . : . : . : . : . :
rJMFF035L04+ CACGGCGGCCCTAGCGCACAACACTTCGAACAAGACAACTCCGAAGGAGTAAACATCGGA
rJMSF023N16+ CACGGCGGCCCTAGCGCANAACACTTCGAACAAGACAACTCCG
rJMFF034F10+ CACGGCGGCCCTAGCGCACAACACTTCGAACAAGACAACTCCGAAGGAGTAAACATCGGA
JMFS071H02+ CACGGCGGCCCTAGCGCACAACACTTCGAACAAGACAACTCCGAAGGAGTAAACATCGGA
rJMSF022E18+ CACGGCGGCCCTAGCGCACAACACTTCGAACAAGACAACTCCGAAGGAGTAAACATCGGA
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consensus CACGGCGGCCCTAGCGCACAACACTTCGAACAAGACAACTCCGAAGGAGTAAACATCGGA

. : . : . : . : . : . :
rJMFF035L04+ CTTTTCCGTTACCTGACGCCGTCTGTAGTACTCCGGGTCAACGTACCCGAAGCTGCCCTT
rJMFF034F10+ CTTTTCCGTTACCTGACGCCGTCTGTAGTACTCCGGGTCAACGTACCCGAAGCTGCCCTT
JMFS071H02+ CTTTTCCGTTACCTGACGCCGTCTGTAGTACTCCGGGTCAACGTACCCGAAGCTGCCCTT
rJMSF022E18+ CTTTTCCGTTACCTGACGCCGTCTGTAGTACTCCGGGTCAACGTACCCGAAGCTGCCCTT
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consensus CTTTTCCGTTACCTGACGCCGTCTGTAGTACTCCGGGTCAACGTACCCGAAGCTGCCCTT

. : . : . : . : . : . :
rJMFF034F10+ GACGGCGGTGCTGACGTGGCTTACGGCT
JMFS071H02+ GACGGCGGTGCTGAC
rJMSF022E18+ GACGGCGGTGCTGAC
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consensus GACGGCGGTGCTGACGTGGCTTACGGCT