Alignment Contig 11488

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF009L08+ GGCGACTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMFF013B04+ GACTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMFF009D18+ GACTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMFF007K12+ GACTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMFF051L20+ ACTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMFN006M17+ GACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMFF022P17+ CTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMSF044G15+ CTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
JMSF050H20+ GAAATCCGCAATTTTCTGATTCTTCCCTGTGTT
____________________________________________________________
consensus GGCGACTGACGAGTGACGACGCCAATTGAAATCCGCAATTTTCTGATTCTTCCCTGTGTT

. : . : . : . : . : . :
JMFF009L08+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMFF013B04+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMFF009D18+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMFF007K12+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMFF051L20+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMFN006M17+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMFF022P17+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMSF044G15+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
JMSF050H20+ TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG
____________________________________________________________
consensus TCTGGATTATGGAGGATTTTGATATGCCGCCCGCCGAGATGGATGACTTGGATCTGCCCG

. : . : . : . : . : . :
JMFF009L08+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMFF013B04+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMFF009D18+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMFF007K12+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMFF051L20+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMFN006M17+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMFF022P17+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMSF044G15+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
JMSF050H20+ ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA
____________________________________________________________
consensus ATGACAATCCGGTAATGAAGGTCGGAGAGGAAAAGGAGATCGGAGACCAAGGCTTGAAGA

. : . : . : . : . : . :
JMFF009L08+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMFF013B04+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMFF009D18+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMFF007K12+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMFF051L20+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMFN006M17+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMFF022P17+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMSF044G15+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
JMSF050H20+ AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG
____________________________________________________________
consensus AGAAGCTTGTTAAAGAAGGCGCAGGCTGGGAGACTCCTGAGCCTGGCGACGAAGTGGAAG

. : . : . : . : . : . :
JMFF009L08+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMFF013B04+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMFF009D18+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMFF007K12+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMFF051L20+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMFN006M17+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGA
JMFF022P17+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMSF044G15+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
JMSF050H20+ TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA
____________________________________________________________
consensus TTCATTACACTGGGACGCTGCTCGACGGAACTAAGTTTGATTCGAGTAGAGATAGGGGGA

. : . : . : . : . : . :
JMFF009L08+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMFF013B04+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMFF009D18+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMFF007K12+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMFF051L20+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMFF022P17+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMSF044G15+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
JMSF050H20+ CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA
____________________________________________________________
consensus CTCCGTTTAAGTTCACTCTTGGTCAAGGTCAAGTAATAAAGGGATGGGATCAAGGTATCA

. : . : . : . : . : . :
JMFF009L08+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMFF013B04+ AAACAATGAAGAAGGGTGAATGTTGGATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMFF009D18+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMFF007K12+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMFF051L20+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMFF022P17+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMSF044G15+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
JMSF050H20+ AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG
____________________________________________________________
consensus AAACAATGAAGAAGGGTGAATGTTGTATCTTCACTATTCCTCCAGATCTTGCCTATGGTG

. : . : . : . : . : . :
JMFF009L08+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMFF013B04+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMFF009D18+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMFF007K12+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMFF051L20+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMFF022P17+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMSF044G15+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
JMSF050H20+ AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC
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consensus AGTCTGGTTCCCCCCCTACCATTCCTCCAAATGCAACTCTCCAGTTTGATGTGGAATTGC

. : . : . : . : . : . :
JMFF009L08+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATTTTTAAGAAGGTTCTTG
JMFF013B04+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATCTTTAAGAAGGTTCTTG
JMFF009D18+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATTTTTAAGAANGTTCTTG
JMFF007K12+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATTTTTAAGAAGGTTCTTG
JMFF051L20+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAAATTTTTAGAAGGTTCTTG
JMFF022P17+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAG
JMSF044G15+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATTTTTAAGAAGGTTCTTG
JMSF050H20+ TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATTTTTAAGAAGGTTCTTG
____________________________________________________________
consensus TGTCCTGGGTAAGTGTTAAGGACATCTGCAAGGATGGTGGAATTTTTAAGAAGGTTCTTG

. : . : . : . : . : . :
JMFF009L08+ CTG
JMFF013B04+ CTGA
JMFF009D18+ CTGANGGAGAGAAATGGGAAAATCCTAAGGACCCTGATGAGGNTTCAGTCAAGT
JMFF007K12+ CTGAGGGAGAGAAATGGGAAAATCCTAAGGACCCTGATGAGGTTTCAGTCAAGTATGAGG
JMFF051L20+ CTGAGGGAGAGAAATGGGAAAA
JMSF044G15+ CTGAGGGAGAGAAATGGGAAAATCCTAAGGACCCTGATGAGGTTTCAGTCAAGTATGAGG
JMSF050H20+ CTGAGGGAGAGAAATGGGAAAATCCTAAGGACCCTGATGAGGTTTCAGTCAAGTATGAGG
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consensus CTGAGGGAGAGAAATGGGAAAATCCTAAGGACCCTGATGAGGTTTCAGTCAAGTATGAGG

. : . : . : . : . : . :
JMFF007K12+ CC
JMSF044G15+ CCCGACTTGAAGATGGAACATTAGTTGCCAAATCAGATATAGTGGAGTTCACTGTTGAAG
JMSF050H20+ CCCGACTTGAAGATGGAACATTAGTTGCCAAATCAGATATAGTGGAGTTCACTGTTGAAG
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consensus CCCGACTTGAAGATGGAACATTAGTTGCCAAATCAGATATAGTGGAGTTCACTGTTGAAG

. : . : . : . : . : . :
JMSF044G15+ AAGGTCATTTTTGCCCTGCACTTACCAAGGCTGTTAAAACCATGAAGAAAGGAGAGAAAG
JMSF050H20+ AAGGTCATTTTTGCCCTGCACTTACCAAGGCTGTTAAA
____________________________________________________________
consensus AAGGTCATTTTTGCCCTGCACTTACCAAGGCTGTTAAAACCATGAAGAAAGGAGAGAAAG

. : . : . : . : . : . :
JMSF044G15+ TGCAGTTAACCGTGAAGCCTCAATATGGGTTTGGTGAG
____________________________________________________________
consensus TGCAGTTAACCGTGAAGCCTCAATATGGGTTTGGTGAG