Alignment Contig 1148

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF034F01+ AAAAGTTCTGTCCACATTAACACAACCCTGTATACACTGTCACTGATGTTCTCCTTTCAC
rJMFF036K13+ TTCTCCTTTCAC
rJMFF021O08+ CTGTCACTGATGTTCTCCTTTCAC
JMFS050A03- CCCTGTATACACTGTCACTGATGTTCTCCTTTCAC
JMFS035E03- GATGTTCTCCTTTCAC
rJMFF027O14+ TCTGTCCACATTAACACAACCCTGTATACACTGTCACTGATGTTCTCCTTTCAC
rJMFF023N14+ TCTGTCCACATTAACACAACCCTGTATACACTGTCACTGATGTTCTCCTTTCAC
rJMFF018K08+ TCTGTCCACATTAACACAACCCTGTATACACTGTCACTGATGTTCTCCTTTCAC
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consensus AAAAGTTCTGTCCACATTAACACAACCCTGTATACACTGTCACTGATGTTCTCCTTTCAC

. : . : . : . : . : . :
rJMFF034F01+ CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
rJMFF036K13+ CCNGCCATTCTCCTTGCTTTTTCCCATTATATCNNAAGACCACACNAACAGTCCAAACAC
rJMFF021O08+ CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
JMFS050A03- CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
JMFS035E03- CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
rJMFF027O14+ CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
rJMFF023N14+ CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
rJMFF018K08+ CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC
____________________________________________________________
consensus CCAGCCATTCTCCTTGCTTTTTCCCATTATATCAAAAGACCACACAAACAGTCAAAACAC

. : . : . : . : . : . :
rJMFF034F01+ CAACAATTGTTCACAAAAAAAA-TCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
rJMFF036K13+ CGACAATTGTTCACAAAAAAAA-TCCCANNAAATATTAAATAGAATATCCCAAACTCTTA
rJMFF021O08+ CAACAATTGTTCACAAAAAAAA-TCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
JMFS050A03- CAACAATTGTTCACAAAAAAAAATCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
JMFS035E03- CAACAATTGTTCACAAAAAAAAATCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
rJMFF027O14+ CAACAATTGTTCACAAAAAAAA-TCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
rJMFF023N14+ CAACAATTGTTCACAAAAAAAA-TCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
rJMFF018K08+ CAACAATTGTTCACAAAAAAAA-TCCCAACAAATATTAAATA-AATATCCCAAACTCTTA
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consensus CAACAATTGTTCACAAAAAAAA-TCCCAACAAATATTAAATA-AATATCCCAAACTCTTA

. : . : . : . : . : . :
rJMFF034F01+ ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
rJMFF036K13+ ACCACTAAATTTAATATGAAACAGGGGGGGAAAAATCTATAAATGAACAAATTATTGTGC
rJMFF021O08+ ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
JMFS050A03- ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
JMFS035E03- ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
rJMFF027O14+ ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
rJMFF023N14+ ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
rJMFF018K08+ ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC
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consensus ACCACTAAATTTAATATGAAACAGGGGGGTAAAAATCTATAAATGAACAAATTATTGTGC

. : . : . : . : . : . :
rJMFF034F01+ AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
rJMFF036K13+ ANTCCAGTTGTACTGTGATTGANCTTGAAGAGCCACAANAAATTGTCCCTTTCTTCANTC
rJMFF021O08+ AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
JMFS050A03- AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
JMFS035E03- AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
rJMFF027O14+ AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
rJMFF023N14+ AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
rJMFF018K08+ AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC
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consensus AGTCCAGTTGTACTGTGATTGAGCTTGAAGAGCCACAAGAAATTGTCCCTTTCTTCAATC

. : . : . : . : . : . :
rJMFF034F01+ AGAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
rJMFF036K13+ AAANCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGNTGNCAAA
rJMFF021O08+ ANAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
JMFS050A03- AGAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
JMFS035E03- AGAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
rJMFF027O14+ AGAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
rJMFF023N14+ ANAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
rJMFF018K08+ AGAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA
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consensus AGAGCCCTTGGTCTTGGACCTATAGAGAAGCTTCTTCCTCTTGGAAGTTTGGTTGTCAAA

. : . : . : . : . : . :
rJMFF034F01+ TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
rJMFF036K13+ TGNGAGCACCACCTTTCNTGNACAATCTGTTTTGNATCTGTNGCTGATTATCGNCTCATC
rJMFF021O08+ TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
JMFS050A03- TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
JMFS035E03- TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
rJMFF027O14+ TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
rJMFF023N14+ TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
rJMFF018K08+ TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC
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consensus TGTGAGCACCACCTTTCCTGCACAATCTGTTTTGTAGCTGTTGCTGATTATCGTCTCATC

. : . : . : . : . : . :
rJMFF034F01+ AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG
rJMFF036K13+ AGCCGGTCCAATTTTCCGCGATTTCTCTACG
rJMFF021O08+ AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG
JMFS050A03- AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG
JMFS035E03- AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG
rJMFF027O14+ AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG
rJMFF023N14+ AGCCGGTCCAATTTTCCGCGATTTCTCTACNATGATCGTGTACGCGCCTTCAGCAGCAGG
rJMFF018K08+ AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG
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consensus AGCCGGTCCAATTTTCCGCGATTTCTCTACGATGATCGTGTACGCGCCTTCAGCAGCAGG

. : . : . : . : . : . :
rJMFF034F01+ CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
rJMFF021O08+ CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
JMFS050A03- CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
JMFS035E03- CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
rJMFF027O14+ CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
rJMFF023N14+ CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
rJMFF018K08+ CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT
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consensus CACGAACTCGGACCCATAGGCCACGTCCCAACCTATCACCCTCGCCTCCCAAACCAATGT

. : . : . : . : . : . :
rJMFF034F01+ GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC
rJMFF021O08+ GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGG
JMFS050A03- GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC
JMFS035E03- GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC
rJMFF027O14+ GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC
rJMFF023N14+ GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC
rJMFF018K08+ GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC
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consensus GCACTTCTCAGTAACCGGGAACTCAATAGTGTGCTTGGAAGTTGGCTTGATAGTGTCCTC

. : . : . : . : . : . :
rJMFF034F01+ GGTTGCAGGGTCACCAGTGGTGAACTCATAATCGCCCTCTCTGCTAAGCCCGCCATACTG
JMFS050A03- GGTTGCAGGGTCACCAGTGGTGAACTCATAA
JMFS035E03- GGTTGCAGGGTCACCAGTGGTGAACTCATA
rJMFF027O14+ GGTTGCAGGGTCACCAGTGGTGAACTCATAATCGCCCTCTCTGCTAAGCCCGCCATACTG
rJMFF023N14+ GGTTGCAGGGTCACCAGTGGTGAACTCATAATCGCCCTCTCTGCTAAGCCCGCCATACTG
rJMFF018K08+ GGTTGCAGGGTCACCAGTGGTGAACTCATAATCGCCCTCTCTGCTAAGCCCGCCATACTG
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consensus GGTTGCAGGGTCACCAGTGGTGAACTCATAATCGCCCTCTCTGCTAAGCCCGCCATACTG

. : . : . : . : . : . :
rJMFF034F01+ AACAGGTACTTGCTCCGGGGCG
rJMFF027O14+ AACAGGTACTTGCTCCGGGGCG
rJMFF023N14+ AACAGGTACTTGCTCCGGGGCGATATACTTGAAGAGTGTCTCGGC
rJMFF018K08+ AACAGGTACTTGCTCCGGGGCGATATACTTGAANAGTGTCTCGGCGCATTTGGAANGGCC
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consensus AACAGGTACTTGCTCCGGGGCGATATACTTGAAGAGTGTCTCGGCGCATTTGGAANGGCC

. : . : . : . : . : . :
rJMFF018K08+ TGCAAAGACAAACTTGCTCTTTG
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consensus TGCAAAGACAAACTTGCTCTTTG