Alignment Contig 11467

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF003P18+ GCAGATTCCAGCACGCCAAGAAGGCCAAGACCGCAAGACGGCAATGAAGACCAGGCGAAA
JMSF052A06+ GATTCCAGCACGCCAAGAAGGCCAAGACCGCAAGACGGCAATGAAGACCAGGCGAAA
JMSF015A16+ AGACCAGGCGAAA
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consensus GCAGATTCCAGCACGCCAAGAAGGCCAAGACCGCAAGACGGCAATGAAGACCAGGCGAAA

. : . : . : . : . : . :
JMFF003P18+ TTTCAACGGAGAAACGTAATTTATAAATATTCTTTTCATTTAAAATTGTTTCTTTCTCAT
JMSF052A06+ TTTCAACGGAGAAACGTAATTTATAAATATTCTTTTCATTTAAAATTGTTTCTTTCTCAT
JMSF015A16+ TTTCAACGGAGAAACGTAATTTATAAATATTCTTTTCATTTAAAATTGTTTCTTTCTCAT
____________________________________________________________
consensus TTTCAACGGAGAAACGTAATTTATAAATATTCTTTTCATTTAAAATTGTTTCTTTCTCAT

. : . : . : . : . : . :
JMFF003P18+ GATTACAGACTTTAAAAATTCATACAGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAG
JMSF052A06+ GATTACAGACTTTAAAAATTCATACAGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAG
JMSF015A16+ GATTACAGACTTTAAAAATTCATACAGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAG
JMSF013L20+ GATTACAGACTTTAAAAATTCATACAGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAG
JMSF034M01+ CTTTAAAAATTCATACAGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAG
JMSF040G09+ AG
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consensus GATTACAGACTTTAAAAATTCATACAGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAG

. : . : . : . : . : . :
JMFF003P18+ ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA
JMSF052A06+ ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA
JMSF015A16+ ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA
JMSF013L20+ ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA
JMSF034M01+ ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA
JMSF040G09+ ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA
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consensus ATGTTCAAAGCCCCTTAAAAAAGTTTCAGTCTTTAGATCTTCAATTTCTTCGCCTTCCTA

. : . : . : . : . : . :
JMFF003P18+ CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG
JMSF052A06+ CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG
JMSF015A16+ CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG
JMSF013L20+ CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG
JMSF034M01+ CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG
JMSF040G09+ CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG
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consensus CGGCCAAATCCCATAATTTTCTCCAGAAAACCATGGGATCTTTCAGTGGGAGATTTGGGG

. : . : . : . : . : . :
JMFF003P18+ TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA
JMSF052A06+ TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA
JMSF015A16+ TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA
JMSF013L20+ TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA
JMSF034M01+ TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA
JMSF040G09+ TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA
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consensus TTGTTTGGCTGTGCCTAATTTTGTGTGTACTTAACAATTATTGCGTTGCTGGAGAACCGA

. : . : . : . : . : . :
JMFF003P18+ GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGCGATGAGTTCCTCCTCG
JMSF052A06+ GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGCGATGAGTTCCTCCTCG
JMSF015A16+ GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGC
JMSF013L20+ GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGCGATGAGTTCCTCCTCG
JMSF034M01+ GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGCGATGAGTTCCTCCTCG
JMSF040G09+ GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGCGATGAGTTCCTCCTCG
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consensus GATCGCAATCTTCGGAAGAAGCTTACGTCACGCTTCTCTACGGCGATGAGTTCCTCCTCG

. : . : . : . : . : . :
JMFF003P18+ GCGTTCGAGTTCTCGGCAAGTCTATCCGGGATACTGGAACCACTAAAGATATGGTTGTTT
JMSF052A06+ GCGTTCGAGTTCTCGGCAAGTCTATCCGGGATACTGGAACCACTAAAGATATGGTTGTTT
JMSF013L20+ GCGTTCGAGTTCTCGGCAAGTCTATCCGGGATACTGGAACCACTAAAGATATGGTTGTTT
JMSF034M01+ GCGTTCGAGTTCTCGGCAAGTCTATCCGGGATACTGGAACCACTAAAGATATGGTTGTTT
JMSF040G09+ GCGTTCGAGTTCTCGGCAAGTCTATCCGGGATACTGGAACCACTAAAGATATGGTTGTTT
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consensus GCGTTCGAGTTCTCGGCAAGTCTATCCGGGATACTGGAACCACTAAAGATATGGTTGTTT

. : . : . : . : . : . :
JMFF003P18+ TGGTCTCAGATGGTGTCTCCAGCTATGCCAAACAGCTCCTTCAGGCTGATGGGTGG
JMSF052A06+ TGGTCTCAGATGGTGTCTCCAGCTATGCCAAACAGCTCCTTCAGGCTGATGGGTGGATTG
JMSF013L20+ TGGTCTCAGATGGTGTCTCCAGCTATGCCAAACAGCTCCTTCAGGCTGATGGGTGGATTG
JMSF034M01+ TGGTCTCAGATGGTGTCTCCAGCTATGCCAAACAGCTCCTTCAGGCTGATGGGTGGATTG
JMSF040G09+ TGGTCTCAGATGGTGTCTCCAGCTATGCCAAACAGCTCCTTCAGGCTGATGGGTGGATTG
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consensus TGGTCTCAGATGGTGTCTCCAGCTATGCCAAACAGCTCCTTCAGGCTGATGGGTGGATTG

. : . : . : . : . : . :
JMSF052A06+ TGGAAGAAATTACTTTGTTGGCGAACCCAAATCAAGTGAGGCCGAAGAGGTTCTGGGGTG
JMSF013L20+ TGGAAGAAATTACTTTGTTGGCGAACCCAAATCAAGTGAGGCCGA
JMSF034M01+ TGGAAGAAATTACTTTGTTGGCGAACCCAAATCAAGTGAGGCCGAAGAGGTTCTGGGGTG
JMSF040G09+ TGGAAGAAATTACTTTGTTGGCGAACCCAAATCAAGTGAGGCCGAAGAGGTTCTGGGGTG
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consensus TGGAAGAAATTACTTTGTTGGCGAACCCAAATCAAGTGAGGCCGAAGAGGTTCTGGGGTG

. : . : . : . : . : . :
JMSF052A06+ TCTATACAAAGCTAAAAATCTTCAATATGACTAGATACAAGAAAGTGGTGTATCTTGATG
JMSF034M01+ TCTATACAAAGCTAAAAATCTTCAATATGACTAGATACAAGAAAGTGGTGTATCTTGATG
JMSF040G09+ TCTATACAAAGCTAAAAATCTTCAATATGACTAGATACAAGAAAGTGGTGTATCTTGATG
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consensus TCTATACAAAGCTAAAAATCTTCAATATGACTAGATACAAGAAAGTGGTGTATCTTGATG

. : . : . : . : . : . :
JMSF052A06+ CTGATACGATAGTTGTTAAGAA
JMSF034M01+ CTGATACGATAGTTGTTAAGAACATAGAAGACCTATTTAAATGTGGAAAGTTTTGTGCAA
JMSF040G09+ CTGATACGATAGTTGTTAAGAACATAGAAGACCTATTTAAATGTGGAAAGTTTTGTGCAA
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consensus CTGATACGATAGTTGTTAAGAACATAGAAGACCTATTTAAATGTGGAAAGTTTTGTGCAA

. : . : . : . : . : . :
JMSF034M01+ ACTTGAAACATTCAGAAAGGCTGAATTCTGGAGTCATGGTTGTTGAGCCATCCAAGGAAG
JMSF040G09+ ACTTGAAACATTCAGAAAGGCTGAATTCTGGAGTCATGGTTGTTGAGCCATCCAAGGAAG
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consensus ACTTGAAACATTCAGAAAGGCTGAATTCTGGAGTCATGGTTGTTGAGCCATCCAAGGAAG

. : . : . : . : . : . :
JMSF034M01+ TTTTTAACGATATGATGAGCAAGGTAAACACTTTGCATTCTTACAC
JMSF040G09+ TTTTTAACGATATGATGAGCAAGGTTAACACTTTGCATTCTTACAC
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consensus TTTTTAACGATATGATGAGCAAGGTAAACACTTTGCATTCTTACAC