Alignment Contig 11328

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF024I18+ AATTGTTCTGATAGCAATGAAACTTAACATTATCTTCTTCTATACCATCCCAAATTATGT
rJMFF006M16+ TTATCTTCTTCTATACCATCCCAAATTATGT
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consensus AATTGTTCTGATAGCAATGAAACTTAACATTATCTTCTTCTATACCATCCCAAATTATGT

. : . : . : . : . : . :
rJMSF024I18+ GTTTTTCCACATCCAATATAACAATCCAATTATCTTATCTGCAACAACAAAATTAATATA
rJMFF046H19+ TATAACAATCCAATTATCTTATCTGCAACAACAAAATTAATATA
rJMFF006M16+ GTTTTTCCACATCCAATATAACAATCCAATTATCTTATCTGCAACAACAAAATTAATATA
JMFS037E01+ TCCAATATAACAATCCAATTATCTTATCTGCAACAACAAAATTAATATA
rJMSF045I20+ TCCAATATAACAATCCAATTATCTTATCTGCAACAACAAAATTAATATA
rJMFF029N01+ AATTATCTTATCTGCAACAACAAAATTAATATA
rJMFF023B23+ ATTATCTTATCTGCAACAACAAAATTAATATA
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consensus GTTTTTCCACATCCAATATAACAATCCAATTATCTTATCTGCAACAACAAAATTAATATA

. : . : . : . : . : . :
rJMSF024I18+ CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC
rJMFF046H19+ CAATCCTCAACCACTTCTTCTAAAAGCCTAAACTATCCATAAAAACTCTAGGGGTTCTTC
rJMFF006M16+ CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC
JMFS037E01+ CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC
rJMSF045I20+ CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC
rJMFF029N01+ CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC
rJMFF023B23+ CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC
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consensus CAATCCTCAACCACATCTTCTAAAAGCCTAAACTATCCATAAGAACTCTAGTGGTTCTTC

. : . : . : . : . : . :
rJMSF024I18+ TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTT-GTTTTTCAAGGTT
rJMFF046H19+ TGCAAAGGGAAAACCTGAACTATGAAAAAGCTTTTAATTTTTTTTTTGTTTTTCAAGGTT
rJMFF006M16+ TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTT-GTTTTTCAAGGTT
JMFS037E01+ TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTT-GTTTTTCAAGGTT
rJMSF045I20+ TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTT-GTTTTTCAAGGTT
rJMFF029N01+ TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTTTGTTTTTCAAGGTT
rJMFF023B23+ TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTTTGTTTTTCAAGGTT
JMFN006K10- CTTTTAATTTTTTTTTGTTTTTCAAGGTT
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consensus TGCAAAGTGTAGACCTGTACTATGTAAAAGCTTTTAATTTTTTTTTTGTTTTTCAAGGTT

. : . : . : . : . : . :
rJMSF024I18+ GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAAGAAAA
rJMFF046H19+ GTTTGCACTAACCATAATGAAATGCCGTTCTTCCAAAAAGTTTTGGGAAATGGAAAAAAA
rJMFF006M16+ GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAAGAAAA
JMFS037E01+ GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAAGAAAA
rJMSF045I20+ GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAAGAAAA
rJMFF029N01+ GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAANAAAA
rJMFF023B23+ GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAANAAAA
JMFN006K10- GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAAGAAAA
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consensus GTTTGCACTAACCATAATGAAATGTCGTTCTTCCTAATAGTTTTGGGAAATGGAAGAAAA

. : . : . : . : . : . :
rJMSF024I18+ TAGTGATGAAGATCAGACAAAGAGGAGGACCCTGCAGACAACCTTAAACTCGATCAGGTG
rJMFF046H19+ TAGTGATGAAAATCAAACAAAGAGGAGGACCCTGCAAACAACCTTAAACTCAATCAGGGG
rJMFF006M16+ TAGTGATGAAGATCAGACAAAGAGGAGGACCCTGCAGACAACCTTAAACTCGATCAGGTG
JMFS037E01+ TAGTGATGAAGATCAGACAAAGAGGAGGACCCTGCAGACAACCTTAAACTCGATCAGGTG
rJMSF045I20+ TAGTGATGAAGATCAGACAAAGAGGAGGACCCTGCAGACAACCTTAAACTCGATCAGGTG
rJMFF029N01+ TAGTGATGAAGATCANACAAAGAGGAGGACCCTGCANACAACCTTAAACTCGATCAGGTG
rJMFF023B23+ TAGTGATGAANATCANACAAANAGGAGGACCCTGCANACAACCTTAAACTCNATCAGGTG
JMFN006K10- TAGTGATGAAGATCAGACAAAGAGGAGGACCCTGCAGACAACCTTAAACTCGATCAGGTG
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consensus TAGTGATGAAGATCAGACAAAGAGGAGGACCCTGCAGACAACCTTAAACTCGATCAGGTG

. : . : . : . : . : . :
rJMSF024I18+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG
rJMFF046H19+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTT
rJMFF006M16+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG
JMFS037E01+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG
rJMSF045I20+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG
rJMFF029N01+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG
rJMFF023B23+ ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCN
JMFN006K10- ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG
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consensus ACAAAGTCTGGCAACAATTGTGCAGGGAACCTCTTGCGGTTTTGGATGTTGAAGTTGTCG

. : . : . : . : . : . :
rJMSF024I18+ AACACGCTGGTGGGGTGAGCAGATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT
rJMFF006M16+ AACACGCTGGTGGGGTGAGCAGATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT
JMFS037E01+ AACACGCTGGTGGGGTGAGCACATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT
rJMSF045I20+ AACACGCTGGTGGGGTGAGCAGATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT
rJMFF029N01+ AACACGCTGGTGGGGTGAGCANATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT
rJMFF023B23+ AACACGCTGGTGGGGTGAGCANATGTCGGAGTGGTCATTCCAGCGACNAAATCATTTGCT
JMFN006K10- AACACGCTGGTGGGGTGAGCAGATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT
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consensus AACACGCTGGTGGGGTGAGCAGATGTCGGAGTGGTCATTCCAGCGACGAAATCATTTGCT

. : . : . : . : . : . :
rJMSF024I18+ TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
rJMFF006M16+ TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
JMFS037E01+ TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
rJMSF045I20+ TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
rJMFF029N01+ TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
rJMFF023B23+ TCGGCTTCACCAATCACNACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
JMFN006K10- TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG
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consensus TCGGCTTCACCAATCACGACTCCCCTTCCCATTTGATTGGGGAGGAAATTGTGGTGTGTG

. : . : . : . : . : . :
rJMSF024I18+ GCAGACATGGCGGCGGAGAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG
rJMFF006M16+ GCAGACATGGCGGCGGAGAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG
JMFS037E01+ GCATACATGGCGGCGGAGAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG
rJMSF045I20+ GCAGACATGGCGGCGGAGAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG
rJMFF029N01+ GCAAACATGGCGGCGGANAGGTTTTCNCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG
rJMFF023B23+ GCAAACATGGCGGCGGANAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGANACAGCG
JMFN006K10- GCAGACATGGCGGCGGAGAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG
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consensus GCAGACATGGCGGCGGAGAGGTTTTCGCTGTGCTGCAGGCCGAGGGTTAGGGAGACAGCG

. : . : . : . : . : . :
rJMSF024I18+ TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG
rJMFF006M16+ TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG
JMFS037E01+ TTGGTGGAA-AAGGCGGCGGGAATTGCTCGGTGGTGAACCG
rJMSF045I20+ TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG
rJMFF029N01+ TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG
rJMFF023B23+ TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG
JMFN006K10- TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG
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consensus TTGGTGGAATAAGGCGGGGGGAATTGCTCGGTGGTGAACCGCCCCATTTGCTCCATTGGG

. : . : . : . : . : . :
rJMSF024I18+ TAGGAGCCGAAGGCGGCCATGAAGTTTGTTGATCCCTCCACCAAGGGGAATCCTTCTCGG
rJMFF006M16+ TAGGAGCCGAAGGCGGCCATGAAGTTTGTTGATCCCTCCACCAAGGGGAATCCTTCTCGG
rJMSF045I20+ TAGGAGCCGAAGGCGGCCATGAAGTTTGTTGATCCCTCCACCAAGGGGAATCCTTCTCGG
rJMFF029N01+ TAGGAGCCGAAGGCGGCCATGAAGTTTGTTGATCCCTCCACCAAGGGGAATCCTTCTCGG
rJMFF023B23+ TAGGA
JMFN006K10- TAGGAGCCGAAGGCGGCCATGAAGTTTGTTGATCCCTCCACCAAGGGGAATCCTTCTCGG
____________________________________________________________
consensus TAGGAGCCGAAGGCGGCCATGAAGTTTGTTGATCCCTCCACCAAGGGGAATCCTTCTCGG

. : . : . : . : . : . :
rJMSF024I18+ TTTGGCCTGTCGTTGCCAAATTTCATGAGAGCGGGCATGTCTGANCCCCCCCGCGGCTTC
rJMFF006M16+ TTTTGCCTGTCGTTGCCAAATTTCATGAAAGCGGGCATGTCTGAGCCCCCCCGCGGCTTC
rJMSF045I20+ TTTTGCCTGTCGTTGCCAAATTTCATGAGAGCGGGCATGTCTGAGCCCCCCCGCGGCTTC
rJMFF029N01+ TTTTGCCTGTCGTTGCCAAATTTCATGANANCGGGCATGTCTGANCCCCCCCGCGGCTTC
JMFN006K10- TTTTGCCTGTCGTTGCCAAATTTCATGAGAGCGGGCATGTCTGAGCCCCCCCGCGGCTTC
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consensus TTTTGCCTGTCGTTGCCAAATTTCATGAGAGCGGGCATGTCTGAGCCCCCCCGCGGCTTC

. : . : . : . : . : . :
rJMSF024I18+ NTTGGA
rJMFF006M16+ TTTGG
rJMSF045I20+ TTTGG
rJMFF029N01+ TTTGGACTTCCCTGANTAATGCTTTCCATTTCTGA
JMFN006K10- TTTGGACTTCCCTGAGTAATGCTTTCCATTTATGAGGGTCCAATGAGGTTGAAACCTG
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consensus TTTGGACTTCCCTGAGTAATGCTTTCCATTTATGAGGGTCCAATGAGGTTGAAACCTG