Alignment Contig 11325

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF023P17+ GTATTGTCCAAAACCTGAGAATCATATGAGCTTTGTCAACAGCTCTGGGTCTTTCCTTAG
rJMSF051D11+ TATTGTCCAAAACCTGAGAATCATATGAGCTTTGTCAACAGCTCTGGGTCTTTCCTTAG
rJMSF007G12+ TATTGTCCAAAACCTGAGAATCATATGAGCTTTGTCAACAGCTCTGGGTCTTTCCTTAG
rJMFF011F21+ GCTCTGGGTCTTTCCTTAG
rJMFF012D18+ GGGTCTTTCCTTAG
rJMFF043D10+ G
rJMFF042B15+ G
____________________________________________________________
consensus GTATTGTCCAAAACCTGAGAATCATATGAGCTTTGTCAACAGCTCTGGGTCTTTCCTTAG

. : . : . : . : . : . :
rJMSF023P17+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMSF051D11+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMSF007G12+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMFF011F21+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMFF012D18+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMFF043D10+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCCCAACGAAACAAGAATGAACAGTTGA
rJMFF042B15+ GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMFF002K08+ ATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA
rJMFF017O07+ TAAGTTTCACAACGAAACAAGAATGAACAGTTGA
____________________________________________________________
consensus GGGCCTGAATCCCAAAATATTCCAATTAAGTTTCACAACGAAACAAGAATGAACAGTTGA

. : . : . : . : . : . :
rJMSF023P17+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMSF051D11+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMSF007G12+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMFF011F21+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMFF012D18+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMFF043D10+ GGAAACAATTACAAGAATCCTACCTGATACAGTGAAAAATCTGTGCATACCAAATTGCCT
rJMFF042B15+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMFF002K08+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
rJMFF017O07+ GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT
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consensus GGAAACAATTACAAGAATCATACATGATACAGTGAAGAATCTGTGCATACCAAATTGCCT

. : . : . : . : . : . :
rJMSF023P17+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMSF051D11+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMSF007G12+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMFF011F21+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMFF012D18+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMFF043D10+ CCACTGTATCTCGCAATCTAAGATTCCCCTATAGTTTAAGAGTGGACTTATTTTTTCCAT
rJMFF042B15+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMFF002K08+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMFF017O07+ CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT
rJMFF005J22+ T
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consensus CGACTGTATCTCGCAATCTAAGATTCACCTATAGTTTAAGAGTGTACTTATTTTTTCCAT

. : . : . : . : . : . :
rJMSF023P17+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMSF051D11+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMSF007G12+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMFF011F21+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMFF012D18+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMFF043D10+ AAATATGGCCAAAAGGGAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGGTGGCAACTT
rJMFF042B15+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMFF002K08+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMFF017O07+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
rJMFF005J22+ AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT
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consensus AAATATGGCCAAAAGGTAGCTCAAAAACTTTCAAATGTCCAAAAAAAAGGTTGTCAACTT

. : . : . : . : . : . :
rJMSF023P17+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMSF051D11+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMSF007G12+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMFF011F21+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMFF012D18+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMFF043D10+ GGGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAAAAAAT
rJMFF042B15+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMFF002K08+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMFF017O07+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
rJMFF005J22+ GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT
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consensus GTGACTTTCCCACTGAAAAAATTATTCGGACTGGAACTGGCTGCAGCTGAAAAAGAAAAT

. : . : . : . : . : . :
rJMSF023P17+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMSF051D11+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMSF007G12+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMFF011F21+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMFF012D18+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMFF043D10+ TATTTGGACTGGAACCAGCTGCTTACGGGGGCATAACTTGGAAAAAAAAGAACGTCTCCA
rJMFF042B15+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMFF002K08+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMFF017O07+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
rJMFF005J22+ TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA
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consensus TATTTGGACTGGAACCAGCTGCTTACGGTGTCATAACTTGGAAGATAAAGAACGTCTCCA

. : . : . : . : . : . :
rJMSF023P17+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMSF051D11+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMSF007G12+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMFF011F21+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMFF012D18+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMFF043D10+ TAGGACGCCATGGTAAGAGGAGATGATATAA
rJMFF042B15+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMFF002K08+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMFF017O07+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
rJMFF005J22+ TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT
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consensus TAGGACGCCATGGTAAGAGGAGATGATATAAGTTTTTGTGCAATTGAAGCAATATCCTTT

. : . : . : . : . : . :
rJMSF023P17+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMSF051D11+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMSF007G12+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMFF011F21+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMFF012D18+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMFF042B15+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMFF002K08+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
rJMFF017O07+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGNATGTC
rJMFF005J22+ GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC
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consensus GCTGAAACTTCTTCTATGGCTTTCAAGAAATGCTCCACAGGTTTCCTCTCTCCGTATGTC

. : . : . : . : . : . :
rJMSF023P17+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMSF051D11+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMSF007G12+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMFF011F21+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMFF012D18+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMFF042B15+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMFF002K08+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMFF017O07+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
rJMFF005J22+ AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG
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consensus AAAATTTGTCTGCCTATGTCTTCTGATGCAACCATCCTGGACTCTAAGTTCATTAAAATG

. : . : . : . : . : . :
rJMSF023P17+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMSF051D11+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMSF007G12+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMFF011F21+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMFF012D18+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMFF042B15+ GCAGATTTTGTTGCTTGTTT
rJMFF002K08+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMFF017O07+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
rJMFF005J22+ GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT
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consensus GCAGATTTTGTTGCTTGTTTAGCACGATCAAGCTGCTGTTGGTCAACTTCACCCGGACTT

. : . : . : . : . : . :
rJMSF023P17+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA
rJMSF051D11+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGA
rJMSF007G12+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA
rJMFF011F21+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCA
rJMFF012D18+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA
rJMFF002K08+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA
rJMFF017O07+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA
rJMFF005J22+ GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA
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consensus GCAATGGCAGTGAGCTCTTTAACAGCGATATCAACAGCTTTTGATGAAAAATCAGAAGAA

. : . : . : . : . : . :
rJMSF023P17+ GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAA
rJMSF007G12+ GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAAATGCTGCTGAATGCANAGANC
rJMFF012D18+ GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAAATGCTGCTGAATGCANAGAAC
rJMFF002K08+ GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAAATGCTGCTGAATGCAGAGAAC
rJMFF017O07+ GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAAATGCTGCTGAATGCAGAGAAC
rJMFF005J22+ GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAAATGCTGCTGAATGCAGAGAAC
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consensus GTAGTTGCTTGAATTCCAAATAACCCAGTGCTATTGAAAATGCTGCTGAATGCAGAGAAC

. : . : . : . : . : . :
rJMSF007G12+ GCATGGACTTGCGGATA
rJMFF012D18+ GCATGGACTTGCGGATACTCATTCA
rJMFF002K08+ GCATGGACTTGCGGATACTCATTCAATACACGAAGATATAGCCTTGAATACATTCCCT
rJMFF017O07+ GCATGGACTTGCGGATACTCATTCA
rJMFF005J22+ GCATGGACTTGCGGATACTCATTCAATACACGAAGATATAGCCTTGAATACATTCCCTTT
____________________________________________________________
consensus GCATGGACTTGCGGATACTCATTCAATACACGAAGATATAGCCTTGAATACATTCCCTTT

. : . : . : . : . : . :
rJMFF005J22+ CCAGGACCACCAGCAGAGAAAGAACCACCCCCTCCCATAAGCATCTGAAGCACAGTCAAA
____________________________________________________________
consensus CCAGGACCACCAGCAGAGAAAGAACCACCCCCTCCCATAAGCATCTGAAGCACAGTCAAA

. : . : . : . : . : . :
rJMFF005J22+ GTCATTGCATCCTTTTCCTTATGCCAGCCACCAGGAAGTTCAAAAGCAAGGGCAAAATGA
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consensus GTCATTGCATCCTTTTCCTTATGCCAGCCACCAGGAAGTTCAAAAGCAAGGGCAAAATGA

. : . : . : . : . : . :
rJMFF005J22+ GTTACC
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consensus GTTACC