Alignment Contig 11230

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF001G17+ ATTATCCAACATTAGCCTGCCTATCCNAGGATTCNTAGGCATCAATTTCTCATACNAGTG
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consensus ATTATCCAACATTAGCCTGCCTATCCNAGGATTCNTAGGCATCAATTTCTCATACNAGTG

. : . : . : . : . : . :
rJMSF001G17+ ATTAAATAAAGANNAGGAANAAGAAAGAAAATCATCTACNGNTCANCATGAGAGTCGNCG
rJMFF031B05+ TCGTCG
rJMSF045G24+ TCGTCG
rJMSF049O02+ TCGTCG
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consensus ATTAAATAAAGANNAGGAANAAGAAAGAAAATCATCTACNGNTCANCATGAGAGTCGTCG

. : . : . : . : . : . :
rJMSF001G17+ TCGTNACTGCTTCCACTACNTCNNGGGGCTCCGNCNGATCTCTGGTATACAGCGGNGATA
rJMFF031B05+ TCGTCACTGCTTCCACTACCTCCAGGGGCTCCGCCAGATCTCTGGTATACAGCGGTGATA
rJMSF045G24+ TCGTCACTGCTTCCACTACCTCCAGGGGCTCCGCCAGATCTCTGGTATACAGCGGTGATA
rJMSF049O02+ TCGTCACTGCTTCCACTACCTCCAGGGGCTCCGCCAGATCTCTGGTATACAGCGGTGATA
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consensus TCGTCACTGCTTCCACTACCTCCAGGGGCTCCGCCAGATCTCTGGTATACAGCGGTGATA

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rJMSF001G17+ ATTGGGTTGCATACAGCCTCTACTTCNTTGAGCTTTTCNTCATAATCCT
rJMFF031B05+ ATTGGGTTGCATACAGCCTCTACTTCCTTGAGCTTTTCATCATAATCCTCCTTCTCAGCG
rJMSF045G24+ ATTGGGTTGCATACAGCCTCTACTTCCTTGAGCTTTTCATCATAATCCTCCTTCTCAGCG
rJMSF049O02+ ATTGGGTTGCATACAGCCTCTACTTCCTTGAGCTTTTCATCATAATCCTACTTCTCAGCG
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consensus ATTGGGTTGCATACAGCCTCTACTTCCTTGAGCTTTTCATCATAATCCTCCTTCTCAGCG

. : . : . : . : . : . :
rJMFF031B05+ TTCTGATTGTCATCCAACCATTCAAGGGCCTCTTTTGTTGCTGTCTCAATCTTCTCCTTC
rJMSF045G24+ TTCTGATTGTCATCCAACCATTCAAGGGCCTCTTTTGTTGCTGTCTCAATCTTCTCCTTC
rJMSF049O02+ TTCTGATTGTCATCCAACCATTCAAGGGCCTCTTTTGTTGCTGTCTCAATCTTCTCCTTC
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consensus TTCTGATTGTCATCCAACCATTCAAGGGCCTCTTTTGTTGCTGTCTCAATCTTCTCCTTC

. : . : . : . : . : . :
rJMFF031B05+ TCCTCGGATTCTAGTTTATCTGCTAGCTTGTCCTTGTCGTTGATCTGGTTCTTCATGTTG
rJMSF045G24+ TCCTCGGATTCTAGTTTATCTGCTAGCTTGTCCTTGTCGTTGATCTGGTTCTTCATGTTG
rJMSF049O02+ TCCTCGGATTCTAGTTTATCTGCTAGCTTGTCCTTGTCGTTGATCTGGTTCTTCATGTTG
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consensus TCCTCGGATTCTAGTTTATCTGCTAGCTTGTCCTTGTCGTTGATCTGGTTCTTCATGTTG

. : . : . : . : . : . :
rJMFF031B05+ TAAACATACGTCTCCAAGCTGTTACGGGCATCAATCCTTTCTTTTACCTTCTTGTCCTCC
rJMSF045G24+ TAAACATACGTCTCCAAGCTGTTACGGGCATCAATCCTTTCTTTTACCTTCTTGTCCTCC
rJMSF049O02+ TAAACATACGTCTCCAAGCTGTTACGGGCATCAATCCTTTCTTTTACCTTCTTGTCCTCC
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consensus TAAACATACGTCTCCAAGCTGTTACGGGCATCAATCCTTTCTTTTACCTTCTTGTCCTCC

. : . : . : . : . : . :
rJMFF031B05+ TCGGCAAACTCTTCAGCCTCCCTCACCATCCGCTCAATTTCCTCTTGGCTCAGGCGCCCT
rJMSF045G24+ TCGGCAAACTCTTCAGCCTCCCTCACCATCCGCTCAATTTCCTCTTGGCTCAGGCGTCCT
rJMSF049O02+ TCGGCAAACTCTTCAGCCTCCCTCACCATCCGCTCAATTTCCTCTTGGCTCAGGCGTCCT
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consensus TCGGCAAACTCTTCAGCCTCCCTCACCATCCGCTCAATTTCCTCTTGGCTCAGGCGTCCT

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rJMFF031B05+ TTATCGTTGGTGATGGTAATCTTCTCAGATCGCCCAGAGGCCTTGTCTTCGGCTTTAACA
rJMSF045G24+ TTATCGTTGGTGATGGTAATCTTCTCAGATCGCCCAGAGGCCTTGTCTTCGGCTTTAACA
rJMSF049O02+ TTATCGTTGGTGATGGTAATCTTCTCAGATCGCCCAGAGGCCTTGTCTTCGGCTTTAACA
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consensus TTATCGTTGGTGATGGTAATCTTCTCAGATCGCCCAGAGGCCTTGTCTTCGGCTTTAACA

. : . : . : . : . : . :
rJMFF031B05+ TTCAAAATGCCGTTGGCATCAACCTCAAATGTAACTTCAATTTGAGGTGTTCCTCTAGGA
rJMSF045G24+ TTCAAAATGCCGTTGGCATCAACCTCAAATGTAACTTCAATTTGAGGTGTTCCTCTAGGA
rJMSF049O02+ TTCAAAATGCCGTTGGCATCAACCTCAAATGTAACTTCAATTTGAGGTGTTCCTCTAGGA
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consensus TTCAAAATGCCGTTGGCATCAACCTCAAATGTAACTTCAATTTGAGGTGTTCCTCTAGGA

. : . : . : . : . : . :
rJMFF031B05+ GCTGGGG-CTATTCCGGGTAGATCAAATTTTCCAAGCAACCTGTTGTCCTTTG
rJMSF045G24+ GCTGGGGGCTATTCCGGTTAGATCAAATTTTCCAAGCAA
rJMSF049O02+ GCTGGGG-CTATTCCGGTTAGATCAAATTTTCCAAGCAACCTGTTGTCCTTTGTGAGACC
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consensus GCTGGGG-CTATTCCGGTTAGATCAAATTTTCCAAGCAACCTGTTGTCCTTTGTGAGACC

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rJMSF049O02+ CCTTTCACCTTCAAAGACCTGAATTGTGACAGTTGTCTGTTGATCTTGGTAG
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consensus CCTTTCACCTTCAAAGACCTGAATTGTGACAGTTGTCTGTTGATCTTGGTAG