Alignment Contig 11211

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049D09+ CCTTATGGCGGATCACCCGGAGAGTTTTTTTTTTTTTTTTAGCAATTAAACACACAACTC
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consensus CCTTATGGCGGATCACCCGGAGAGTTTTTTTTTTTTTTTTAGCAATTAAACACACAACTC

. : . : . : . : . : . :
rJMFF049D09+ ATACAAGATGATAAAAATACACAATTGAACATAGGAAAAATATGGTTTGTCACTACAAAT
rJMFF029H04+ AAAATATGGTTTGTCACTACAAAT
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consensus ATACAAGATGATAAAAATACACAATTGAACATAGGAAAAATATGGTTTGTCACTACAAAT

. : . : . : . : . : . :
rJMFF049D09+ CCAAATGTGATGAAAAAATATAATCCAAGAAATAATGGTCCTGACAAACATCAAATCTTC
rJMFF029H04+ CCAAATGTGATGAAAAAATATAATCCAAGAAATAATGGTCCTGACAAACATCAAATCTTC
rJMFF009P16+ AATGTGATGAAAAAATATAATCCAAGAAATAATGGTCCTGACAAACATCAAATCTTC
rJMFF037F16+ AATGTGATGAAAAAATATAATCCAAGAAATAATGGTCCTGACAAACATCAAATCTTC
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consensus CCAAATGTGATGAAAAAATATAATCCAAGAAATAATGGTCCTGACAAACATCAAATCTTC

. : . : . : . : . : . :
rJMFF049D09+ AATATTATGTTCTTTTACCAGGCTGGGAGGATGTAAT-TGGTCCTCCCTATTGGCAATTT
rJMFF029H04+ AATATTATGTTCTTTTACCAGGCTGGGAGGATGTAAT-TGGTCCTCCCTATTGGCAATTT
rJMFF009P16+ AATATTATGTTCTTTTACCAGGCTGGGAGGATGTAAT-TGGTCCTCCCTATTGGCAATTT
rJMFF037F16+ AATATTATGTTCTTTTACCAGGCTGGGAGGATGTAAT-TGGTCCTCCCTATTGGCAATTT
rJMFF020I14+ ATATTATGTTCTTTTNCCAGGCTGGGAGGATGTAATGTGGTCCTCCCTATTGGCAGTTT
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consensus AATATTATGTTCTTTTACCAGGCTGGGAGGATGTAAT-TGGTCCTCCCTATTGGCAATTT

. : . : . : . : . : . :
rJMFF049D09+ TACAGTCTCCAGAATAACAATCCCTTAACACAAGTTATATGGATAGAATTAAATTCCAAA
rJMFF029H04+ TACAGTCTCCAGAATAACAATCCCTTAACACAAGTTATATGGATAGAATTAAATTCCAAA
rJMFF009P16+ TACAGTCTCCAGAATAACAATCCCTTAACACAAGTTATATGGATAGAATTAAATTCCAAA
rJMFF037F16+ TACAGTCTCCAGAATAACAATCCCTTAACACAAGTTATATGGATAGAATTAAATTCCAAA
rJMFF020I14+ TACAGTCTCCAGAATAACGATCCCTTAACACAAGTTATATGGATAGAATTAAATTCCAAA
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consensus TACAGTCTCCAGAATAACAATCCCTTAACACAAGTTATATGGATAGAATTAAATTCCAAA

. : . : . : . : . : . :
rJMFF049D09+ GGGGAAAGTTTTACTGAAAGATGATTGGGAAGTTTTACTGAAACTTTTACCAGCTTTAGA
rJMFF029H04+ GGGGAAAGTTTTACTGAAAGATGATTGGGAAGTTTTACTGAAACTTTTACCAGCTTTAGA
rJMFF009P16+ GGGGAAAGTTTTACTGAAAGATGATTGGGAAGTTTTACTGAAACTTTTACCAGCTTTAGA
rJMFF037F16+ GGGGAAAGTTTTACTGAAAGATGATTGGGAAGTTTTACTGAAACTTTTACCAGCTTTAGA
rJMFF020I14+ GGGGAAAGTTTTACTGAAAGATGATTGGGAAGTTTTACTGAAACTTTTACCAGCTTTAGA
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consensus GGGGAAAGTTTTACTGAAAGATGATTGGGAAGTTTTACTGAAACTTTTACCAGCTTTAGA

. : . : . : . : . : . :
rJMFF049D09+ GGAACCCTCCATCACTCCACTTAGTGTCTGATTTTCCATTGTGTCCAACATGTTTATTAT
rJMFF029H04+ GGAACCCTCCATCACTCCACTTAGTGTCTGATTTTCCATTGTGTCCAACATGTTTATTAT
rJMFF009P16+ GGAACCCTCCATCACTCCACTTAGTGTCTGATTTTCCATTGTGTCCAACATGTTTATTAT
rJMFF037F16+ GGAACCCTCCATCACTCCACTTAGTGTCTGATTTTCCATTGTGTCCAACATGTTTATTAT
rJMFF020I14+ GGAACCCTCCATCACTCCACTTAGTGTCTGATTTTCCATTGTGTCCAACATGTTTATTAT
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consensus GGAACCCTCCATCACTCCACTTAGTGTCTGATTTTCCATTGTGTCCAACATGTTTATTAT

. : . : . : . : . : . :
rJMFF049D09+ CATGTGCACTCTGGTAAAAGTCATCAAACCCATCATCTTTTGCATCATCCCAGCCTGCCC
rJMFF029H04+ CATGTGCACTCTGGTAAAAGTCATCAAACCCATCATCTTTTGCATCATCCCAGCCTGCCC
rJMFF009P16+ CATGTGCACTCTGGTAAAAGTCATCAAACCCATCATCTTTTGCATCATCCCAGCCTGCCC
rJMFF037F16+ CATGTGCACTCTGGTAAAAGTCATCAAACCCATCATCTTTTGCATCATCCCAGCCTGCCC
rJMFF020I14+ CATGTGCACTCTGGTAAAAGTCATCAAACCCATCATCTTTTGCATCATCCCAGCCTGCCC
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consensus CATGTGCACTCTGGTAAAAGTCATCAAACCCATCATCTTTTGCATCATCCCAGCCTGCCC

. : . : . : . : . : . :
rJMFF049D09+ AGCTATCGTTATTAGCTGGGCTTGTTTCTTTTGTATTGTTGCCTTTAGTATCCCAATTGT
rJMFF029H04+ AGCTATCGTTATTAGCTGGGCTTGTTTCTTTTGTATTGTTGCCTTTAGTATCCCAATTGT
rJMFF009P16+ AGCTATCGTTATTAGCTGGGCTTGTTTCTTTTGTATTGTTGCCTTTAGTATCCCAATTGT
rJMFF037F16+ AGCTATCGTTATTAGCTGGGCTTGTTTCTTTTGTATTGTTGCCTTTAGTATCCCAATTGT
rJMFF020I14+ AGCTATCGTTATTAGCTGGGCTTGTTTCTTTTGTATTGTTGCCTTTAGTATCCCAATTGT
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consensus AGCTATCGTTATTAGCTGGGCTTGTTTCTTTTGTATTGTTGCCTTTAGTATCCCAATTGT

. : . : . : . : . : . :
rJMFF049D09+ CCCACGAACCGGAGTTGACAGAATTGAACTGTCGACCGGATGAGGACTGACCACCTCCTC
rJMFF029H04+ CCCACGAACCGGAGTTGACAGAATTGAACTGTCGACCGGATGAGGACTGACCACCTCCTC
rJMFF009P16+ CCCACGAACCGGAGTTGACAGAATTGAACTGTCGACCGGATGAGGACTGACCACCTCCTC
rJMFF037F16+ CCCACGAACCGGAGTTGACAGAATTGAACTGTCGACCGGATGAGGACTGACCACCTCCTC
rJMFF020I14+ CCCACGAACCGGAGTTGACAGAATTGAACTGTCGACCGGATGAGGACTGACCACCTCCTC
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consensus CCCACGAACCGGAGTTGACAGAATTGAACTGTCGACCGGATGAGGACTGACCACCTCCTC

. : . : . : . : . : . :
rJMFF049D09+ CCCCAGAAGAGTTCAAACCTTTAGAGTTGTGATTAAAGTCCTGATAATAGCCATTCTGTT
rJMFF029H04+ CCCCAGAAGAGTTCAAACCTTTAGAGTTGTGATTAAAGTCCTGATAATAGCCATTCTGTT
rJMFF009P16+ CCCCAGAAGAGTTCAAACCTTTAGAGTTGTGATTAAAGTCCTGATAATAGCCATTCTGTT
rJMFF037F16+ CCCCAGAAGAGTTCAAACCTTTAGAGTTGTGATTAAAGTCCTGATAATAGCCATTCTGTT
rJMFF020I14+ CCCCAGAAGAGTTCAAACCTTTANAGTTGTGATTAAAGTCCNGATAATAGCCATTCTGTT
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consensus CCCCAGAAGAGTTCAAACCTTTAGAGTTGTGATTAAAGTCCTGATAATAGCCATTCTGTT

. : . : . : . : . : . :
rJMFF049D09+ CACTT
rJMFF029H04+ CACTTTCATTCCGTTGCCAGCTATCGTTTTTCCAGTTGCCATTGTCCTCCTTAGTATATT
rJMFF009P16+ CACTTTCATTCCGTTGCCAGCTATCGTTTTTCCAGTTGCCATTGT
rJMFF037F16+ CACTTTCATTCCGTTGCCAGCTATCGTTTTTCCAGTTGCCATTGTCCTCCTTAGTATATT
rJMFF020I14+ CACTTTCATTCCGNTGNCAACTATCGTTTTTCCAGCTGCCATTGTCCTCCTTAGTATATT
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consensus CACTTTCATTCCGTTGCCAGCTATCGTTTTTCCAGTTGCCATTGTCCTCCTTAGTATATT

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rJMFF029H04+ CTTCAACCTTCTGTGAAGCTAATGC
rJMFF037F16+ CTTCAACCTTCTGTGAAGCTAATGCCAGTACCCCTTTCATGATCCCCCAGGTTCTTTGAC
rJMFF020I14+ CTTCAACCTTCTGTGAAGCTAATGCCANGACCCCTTTCATGATCCCCCAGGTTCTTTGAC
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consensus CTTCAACCTTCTGTGAAGCTAATGCCAGGACCCCTTTCATGATCCCCCAGGTTCTTTGAC

. : . : . : . : . : . :
rJMFF037F16+ CAATCTCAGGTGTTTTTGCCGTGACTACGTTCACTGTCTCATTCA
rJMFF020I14+ CAATCTCAG
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consensus CAATCTCAGGTGTTTTTGCCGTGACTACGTTCACTGTCTCATTCA