Alignment Contig 11178

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF045E17+ ACCCTGGAGAGXXXXXXXXXXXXXXXXXXXGCTGATCCAAAAAACTTTCTAATTGCATGG
rJMFF039H02+ ATTGCATGG
rJMFF022L12+ CATGG
____________________________________________________________
consensus ACCCTGGAGAGNNNNNNNNNNNNNNNNNNNGCTGATCCAAAAAACTTTCTAATTGCATGG

. : . : . : . : . : . :
rJMFF045E17+ GAATCGGTATAGAAAACAAAAAGGAGGTAGCAATTCTGTTAGAGTACAACATTGTGTAGA
rJMFF039H02+ GAATCGGTATAGAAAACAAAAAGGAGGTAGCAATTCTGTTAGAGTACAACATTGTGTAGA
rJMSF002O12+ AAAAGGAAGTAGCAATTCTGTTAGAGTACAACATTGTGTAGA
rJMSF049A20+ AAAAGGAAGTAGCAATTCTGTTAGAGTACAACATTGTGTAGA
rJMFF022L12+ GAATCGGTATAGAAAACAAAAAGGAGGTAGCAATTCTGTTAGAGTACAACATTGTGTAGA
rJMSF017J01+ ACATTGTGTAGA
____________________________________________________________
consensus GAATCGGTATAGAAAACAAAAAGGAGGTAGCAATTCTGTTAGAGTACAACATTGTGTAGA

. : . : . : . : . : . :
rJMFF045E17+ GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA
rJMFF039H02+ GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA
rJMSF002O12+ GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA
rJMSF049A20+ GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA
rJMFF022L12+ GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA
rJMSF017J01+ GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA
rJMSF046E03+ AGCCTCAGA
rJMSF032K14+ TCAGA
____________________________________________________________
consensus GCAGGCGAGGCTATTGATATACTACATGCCAAGTGAAGCTGGTATTGTGCTAGCCTCAGA

. : . : . : . : . : . :
rJMFF045E17+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMFF039H02+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMSF002O12+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMSF049A20+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMFF022L12+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMSF017J01+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMSF046E03+ TGATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
rJMSF032K14+ TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG
____________________________________________________________
consensus TAATAACAGTAATCTCTGCATTCTAAACTACGAAAATTATGTTTTTACATCCTGGGGAAG

. : . : . : . : . : . :
rJMFF045E17+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMFF039H02+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMSF002O12+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMSF049A20+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMFF022L12+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMSF017J01+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMSF046E03+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
rJMSF032K14+ AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG
____________________________________________________________
consensus AGGGAAAATTCTCGGGCCTTCCCCACAATCAAAAGAGGTACATACCACTGACAAAATCTG

. : . : . : . : . : . :
rJMFF045E17+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMFF039H02+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMSF002O12+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMSF049A20+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMFF022L12+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMSF017J01+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMSF046E03+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
rJMSF032K14+ AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA
____________________________________________________________
consensus AACATCCAGCTGAAACATTACCAGTGCCCAATACTTGAATAGATTCTCGAATTTTTCTGA

. : . : . : . : . : . :
rJMFF045E17+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMFF039H02+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMSF002O12+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMSF049A20+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMFF022L12+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMSF017J01+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMSF046E03+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
rJMSF032K14+ CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT
____________________________________________________________
consensus CTTGTTGCCAGAATAAGAGCACTGAATCAGACCTCGTAACAAATATTAGTCACATTTGAT

. : . : . : . : . : . :
rJMFF045E17+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMFF039H02+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMSF002O12+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMSF049A20+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMFF022L12+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMSF017J01+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMSF046E03+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
rJMSF032K14+ GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG
____________________________________________________________
consensus GTTTCGGTAGATCCTCCTCACGAACAGATTTGAGCCAAGAAAACCAACAGCCCCGCAAAG

. : . : . : . : . : . :
rJMFF045E17+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCCAAGTAGAAGCTGACTTGGAAGAA
rJMFF039H02+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA
rJMSF002O12+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCNAAGTAGAAGCTGACTTGGAAGAA
rJMSF049A20+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA
rJMFF022L12+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA
rJMSF017J01+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA
rJMSF046E03+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA
rJMSF032K14+ GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA
____________________________________________________________
consensus GATTCCTAAGCCCAGACAAAACATCAGTGTGTATCCAAAGTAGAAGCTGACTTGGAAGAA

. : . : . : . : . : . :
rJMFF045E17+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTA
rJMFF039H02+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
rJMSF002O12+ CCCTGACACCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
rJMSF049A20+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
rJMFF022L12+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
rJMSF017J01+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
rJMSF046E03+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
rJMSF032K14+ CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC
____________________________________________________________
consensus CCCTGACATCTTAGTCTTCACATAGTAGTAATATATAGAGTACAAGTATACATAGACAGC

. : . : . : . : . : . :
rJMFF039H02+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
rJMSF002O12+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
rJMSF049A20+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
rJMFF022L12+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
rJMSF017J01+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
rJMSF046E03+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
rJMSF032K14+ TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA
____________________________________________________________
consensus TGTAGAAGCAGCTGAGAAGAATGAAGTCCACTGCCAATGATAATTCTCAGCATTTAGCAA

. : . : . : . : . : . :
rJMFF039H02+ GAAATATGTTCCCACGATCGTCACACCAACAGTAACAATGATGAGAATCAGGAAAACCAG
rJMSF002O12+ GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG
rJMSF049A20+ GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG
rJMFF022L12+ GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG
rJMSF017J01+ GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG
rJMSF046E03+ GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG
rJMSF032K14+ GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG
____________________________________________________________
consensus GAAATATGTTCCCACGATCGTCACACAAACAGTAACAATGATGAGAATCAGGAAAACCAG

. : . : . : . : . : . :
rJMFF039H02+ AAGCATAAATCCATAGACATAGTACACCTTGT--AATTCCAAAAGGATGTGAAGACAAAG
rJMSF002O12+ AAGCATAAATCCATAGACATAGTACACCT
rJMSF049A20+ AAGCATAAATCCATAGACATAGTACACCT
rJMFF022L12+ AAGCATAAATCCATAGACATAGTACACCT
rJMSF017J01+ AAGCATAAATCCATAGACATAGTACACCTTGT--AATTCCAAAAGGATGTGAAGACAAAG
rJMSF046E03+ AAGCATAAATCCATAGACATAGTACACCTTTGTAATTCCCAAAAGGATGTGAAGACAAAG
rJMSF032K14+ AAGCATAAATCCATAGACATAGTACACCNTTGT-AATTCCAAAAGGATGTGAAGACAAAG
____________________________________________________________
consensus AAGCATAAATCCATAGACATAGTACACCTTGGT-AATTCCAAAAGGATGTGAAGACAAAG

. : . : . : . : . : . :
rJMFF039H02+ GTACATCTCAATAAATATGCTGCCAA
rJMSF017J01+ -TACATCTCAATAAATATGCTGCCAATGGAAGCAAGCCGCCCATCATGGAGACTACCGAA
rJMSF046E03+ -TACATCTCAATAAATATGCTGCCAA
rJMSF032K14+ -TACATCTCA
____________________________________________________________
consensus -TACATCTCAATAAATATGCTGCCAATGGAAGCAAGCCGCCCATCATGGAGACTACCGAA

. : . : . : . : . : . :
rJMSF017J01+ GGAGTCAGGTACCACTTCTTTACAG
____________________________________________________________
consensus GGAGTCAGGTACCACTTCTTTACAG